Wall clock time and date at job start Sat Apr 11 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99950 * 2 1 4 4 H 1.48496 * 109.47353 * 269.99932 * 3 2 1 5 5 H 1.48499 * 109.47028 * 29.99608 * 3 2 1 6 6 H 1.48497 * 109.47473 * 149.99792 * 3 2 1 7 7 C 1.37874 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00544 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99657 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.46689 * 179.97438 * 9 7 2 11 11 C 1.38242 * 119.99524 * 90.00444 * 10 9 7 12 12 C 1.38234 * 119.99687 * 179.97438 * 11 10 9 13 13 C 1.38237 * 119.99995 * 359.97438 * 12 11 10 14 14 S 1.76195 * 119.99678 * 179.97438 * 13 12 11 15 15 O 1.42102 * 106.40694 * 336.46410 * 14 13 12 16 16 O 1.42099 * 106.40147 * 203.53979 * 14 13 12 17 17 N 1.65600 * 107.21938 * 90.00354 * 14 13 12 18 18 C 1.47290 * 125.79191 * 269.99961 * 17 14 13 19 19 C 1.54325 * 107.30599 * 178.92104 * 18 17 14 20 20 H 1.09000 * 110.87082 * 219.38096 * 19 18 17 21 21 O 1.42898 * 110.72016 * 96.18376 * 19 18 17 22 22 C 1.55154 * 102.94303 * 337.81911 * 19 18 17 23 23 H 1.09008 * 111.03635 * 277.41090 * 22 19 18 24 24 C 1.52999 * 111.00682 * 153.57509 * 22 19 18 25 25 O 1.42893 * 109.47113 * 181.34766 * 24 22 19 26 26 C 1.47425 * 125.65067 * 89.99559 * 17 14 13 27 27 C 1.38233 * 119.99899 * 0.27815 * 13 12 11 28 28 C 1.38229 * 120.00318 * 269.97713 * 10 9 7 29 29 H 0.97000 * 119.99714 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46967 * 60.00112 * 9 7 2 31 31 H 1.08995 * 109.47128 * 300.00174 * 9 7 2 32 32 H 1.07995 * 120.00032 * 359.97438 * 11 10 9 33 33 H 1.08002 * 119.99705 * 179.97438 * 12 11 10 34 34 H 1.09004 * 109.85762 * 59.49720 * 18 17 14 35 35 H 1.08995 * 110.00297 * 298.42667 * 18 17 14 36 36 H 0.96700 * 114.00520 * 66.47388 * 21 19 18 37 37 H 1.08994 * 109.47238 * 301.35169 * 24 22 19 38 38 H 1.09004 * 109.46626 * 61.34724 * 24 22 19 39 39 H 0.96708 * 114.00099 * 180.02562 * 25 24 22 40 40 H 1.09002 * 110.36696 * 85.26398 * 26 17 14 41 41 H 1.08995 * 110.36608 * 323.05234 * 26 17 14 42 42 H 1.08004 * 119.99497 * 179.72990 * 27 13 12 43 43 H 1.08003 * 119.99855 * 0.02562 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.6796 -4.1698 1.1978 12 6 3.5775 -5.2208 1.1978 13 6 4.0260 -5.7468 0.0007 14 16 5.1711 -7.0859 0.0008 15 8 5.8464 -7.0365 1.2502 16 8 5.8449 -7.0378 -1.2493 17 7 4.2875 -8.4865 0.0021 18 6 3.8285 -9.2144 1.1975 19 6 3.0239 -10.4375 0.7094 20 1 2.1513 -10.6053 1.3405 21 8 3.8495 -11.6032 0.6712 22 6 2.5943 -10.0220 -0.7224 23 1 1.7029 -9.3951 -0.6970 24 6 2.3718 -11.2507 -1.6066 25 8 2.0087 -10.8307 -2.9232 26 6 3.8283 -9.2138 -1.1952 27 6 3.5809 -5.2180 -1.1964 28 6 2.6793 -4.1702 -1.1965 29 1 -0.4850 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8902 32 1 2.3288 -3.7592 2.1330 33 1 3.9287 -5.6309 2.1332 34 1 3.1914 -8.5689 1.8021 35 1 4.6853 -9.5446 1.7848 36 1 4.1453 -11.9045 1.5412 37 1 3.2899 -11.8364 -1.6523 38 1 1.5723 -11.8608 -1.1862 39 1 1.8515 -11.5594 -3.5392 40 1 4.6080 -9.8864 -1.5528 41 1 3.5445 -8.5123 -1.9796 42 1 3.9347 -5.6261 -2.1317 43 1 2.3284 -3.7597 -2.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414285174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:25 Heat of formation + Delta-G solvation = -148.753503 kcal Electronic energy + Delta-G solvation = -27640.097341 eV Core-core repulsion = 23584.052666 eV Total energy + Delta-G solvation = -4056.044675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.72589 -38.79785 -37.17509 -36.83555 -35.77676 -35.69791 -33.67966 -31.56598 -31.50863 -30.57823 -28.97778 -27.42863 -25.61738 -23.73114 -22.68944 -22.34025 -20.86526 -20.65268 -19.17829 -18.24430 -17.88229 -17.49474 -17.26688 -16.44990 -15.78524 -15.39303 -15.22672 -14.99690 -14.88704 -14.52802 -14.37122 -14.23112 -13.83138 -13.65371 -13.34758 -13.11771 -12.83921 -12.57156 -12.39002 -12.23056 -12.05550 -11.95146 -11.79868 -11.70617 -11.48964 -11.27242 -11.16826 -10.96641 -10.91355 -10.54329 -10.51012 -10.48393 -10.22274 -9.76105 -9.66764 -9.19738 -8.59176 -8.54068 -8.38032 -6.17447 -4.22467 0.40947 1.33165 1.79539 2.97707 3.24324 3.30798 3.35282 3.58891 3.75855 3.78443 4.02341 4.09952 4.23425 4.37655 4.57082 4.75595 4.84530 4.94111 5.09356 5.15068 5.15742 5.21716 5.23532 5.24584 5.35871 5.50595 5.58662 5.72157 5.75614 5.85971 5.90776 5.91638 6.17228 6.24865 6.33081 6.52442 6.83678 6.90488 7.16411 7.28972 7.33151 7.43019 7.58681 7.77705 8.12956 8.82328 9.42556 10.92602 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.002723 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.511019 B =10278.605688 C =10868.190139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.027 3.973 11 C -0.146 4.146 12 C -0.024 4.024 13 C -0.705 4.705 14 S 2.711 3.289 15 O -0.961 6.961 16 O -0.958 6.958 17 N -1.012 6.012 18 C 0.092 3.908 19 C 0.102 3.898 20 H 0.083 0.917 21 O -0.557 6.557 22 C -0.093 4.093 23 H 0.105 0.895 24 C 0.093 3.907 25 O -0.574 6.574 26 C 0.136 3.864 27 C -0.022 4.022 28 C -0.145 4.145 29 H 0.264 0.736 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.383 0.617 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.381 0.619 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.129 0.871 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.528 -25.436 0.880 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.003 3.997 10 C 0.026 3.974 11 C -0.164 4.164 12 C -0.044 4.044 13 C -0.794 4.794 14 S 2.806 3.194 15 O -0.952 6.952 16 O -0.948 6.948 17 N -0.850 5.850 18 C -0.034 4.034 19 C 0.042 3.958 20 H 0.100 0.900 21 O -0.364 6.364 22 C -0.113 4.113 23 H 0.123 0.877 24 C 0.015 3.985 25 O -0.380 6.380 26 C 0.011 3.989 27 C -0.041 4.041 28 C -0.164 4.164 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.231 0.769 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.228 0.772 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.147 0.853 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.324 -24.540 0.527 24.923 hybrid contribution -0.285 0.874 0.449 1.023 sum 4.039 -23.666 0.976 24.028 Atomic orbital electron populations 1.69946 1.06071 1.27127 1.49846 1.25002 0.94932 0.99397 0.94803 0.86475 0.79825 0.82754 0.78337 1.20430 1.21022 1.19694 1.20974 0.93112 0.89474 1.52013 0.92284 1.18539 0.92636 0.89516 0.99032 1.21121 0.92197 0.92002 0.92048 1.21238 0.99134 0.97193 0.98883 1.20752 0.93290 0.94686 0.95629 1.30398 1.25383 1.23711 0.99949 1.01232 0.73188 0.71695 0.73249 1.93544 1.70895 1.86439 1.44273 1.93559 1.70815 1.86349 1.44091 1.58739 1.73470 1.39868 1.12888 1.22513 0.99148 0.94106 0.87638 1.22759 0.92239 0.84414 0.96426 0.89953 1.86491 1.70382 1.44424 1.35063 1.22475 0.99252 0.96943 0.92602 0.87667 1.21882 0.99320 0.94845 0.82486 1.86484 1.92179 1.37672 1.21667 1.21943 0.95089 0.95268 0.86639 1.20781 0.93131 0.94506 0.95729 1.21250 0.99004 0.97199 0.98918 0.92625 0.94702 0.94716 0.85349 0.85394 0.90439 0.90202 0.76914 0.92139 0.93366 0.77219 0.90761 0.89957 0.85284 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.14 9.09 -34.44 -0.31 -14.45 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.04 0.97 5.10 -29.03 -0.15 0.83 16 10 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 11 C -0.15 -2.73 9.70 -39.58 -0.38 -3.11 16 12 C -0.02 -0.40 9.52 -39.58 -0.38 -0.78 16 13 C -0.70 -11.53 5.97 -39.58 -0.24 -11.77 16 14 S 2.71 40.38 5.94 -107.50 -0.64 39.75 16 15 O -0.96 -16.00 16.88 -57.17 -0.96 -16.97 16 16 O -0.96 -16.50 16.86 -57.17 -0.96 -17.46 16 17 N -1.01 -11.66 3.71 -111.22 -0.41 -12.08 16 18 C 0.09 0.79 6.78 -2.92 -0.02 0.77 16 19 C 0.10 0.68 4.09 -24.90 -0.10 0.58 16 20 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 21 O -0.56 -3.48 12.09 -35.23 -0.43 -3.91 16 22 C -0.09 -0.78 3.25 -88.47 -0.29 -1.07 16 23 H 0.11 0.90 8.14 -51.92 -0.42 0.48 16 24 C 0.09 0.69 6.10 37.16 0.23 0.92 16 25 O -0.57 -4.76 13.51 -35.23 -0.48 -5.23 16 26 C 0.14 1.45 6.30 -2.53 -0.02 1.44 16 27 C -0.02 -0.37 9.52 -39.59 -0.38 -0.75 16 28 C -0.14 -2.75 9.70 -39.59 -0.38 -3.14 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 31 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 32 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 33 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 36 H 0.38 0.85 9.12 45.56 0.42 1.27 16 37 H 0.06 0.46 7.42 -51.93 -0.39 0.08 16 38 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.38 1.45 9.12 45.56 0.42 1.86 16 40 H 0.07 0.80 8.00 -51.93 -0.42 0.38 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.13 1.92 7.61 -52.48 -0.40 1.52 16 43 H 0.13 2.33 8.06 -52.48 -0.42 1.90 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -35.65 374.81 -10.09 -45.74 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.53 Total: 2.11 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: -3.05 Total: -28.93 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.32 Total: -36.96 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -2.83 Total: -43.57 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 40.38 SS G_CDS: -0.64 Total: 39.75 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.65 -10.09 -45.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414285174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.011 kcal (2) G-P(sol) polarization free energy of solvation -35.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds