Wall clock time and date at job start Sat Apr 11 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99950 * 2 1 4 4 H 1.48496 * 109.47353 * 269.99932 * 3 2 1 5 5 H 1.48499 * 109.47028 * 29.99608 * 3 2 1 6 6 H 1.48497 * 109.47473 * 149.99792 * 3 2 1 7 7 C 1.37874 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00544 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99657 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.46689 * 179.97438 * 9 7 2 11 11 C 1.38242 * 119.99524 * 90.00444 * 10 9 7 12 12 C 1.38234 * 119.99687 * 179.97438 * 11 10 9 13 13 C 1.38237 * 119.99995 * 359.97438 * 12 11 10 14 14 S 1.76195 * 119.99678 * 179.97438 * 13 12 11 15 15 O 1.42102 * 106.40694 * 336.46410 * 14 13 12 16 16 O 1.42099 * 106.40147 * 203.53979 * 14 13 12 17 17 N 1.65600 * 107.21938 * 90.00354 * 14 13 12 18 18 C 1.47290 * 125.79191 * 269.99961 * 17 14 13 19 19 C 1.54325 * 107.30599 * 178.92104 * 18 17 14 20 20 H 1.09000 * 110.87082 * 219.38096 * 19 18 17 21 21 O 1.42898 * 110.72016 * 96.18376 * 19 18 17 22 22 C 1.55154 * 102.94303 * 337.81911 * 19 18 17 23 23 H 1.09008 * 111.03635 * 277.41090 * 22 19 18 24 24 C 1.52999 * 111.00682 * 153.57509 * 22 19 18 25 25 O 1.42893 * 109.47113 * 181.34766 * 24 22 19 26 26 C 1.47425 * 125.65067 * 89.99559 * 17 14 13 27 27 C 1.38233 * 119.99899 * 0.27815 * 13 12 11 28 28 C 1.38229 * 120.00318 * 269.97713 * 10 9 7 29 29 H 0.97000 * 119.99714 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46967 * 60.00112 * 9 7 2 31 31 H 1.08995 * 109.47128 * 300.00174 * 9 7 2 32 32 H 1.07995 * 120.00032 * 359.97438 * 11 10 9 33 33 H 1.08002 * 119.99705 * 179.97438 * 12 11 10 34 34 H 1.09004 * 109.85762 * 59.49720 * 18 17 14 35 35 H 1.08995 * 110.00297 * 298.42667 * 18 17 14 36 36 H 0.96700 * 114.00520 * 66.47388 * 21 19 18 37 37 H 1.08994 * 109.47238 * 301.35169 * 24 22 19 38 38 H 1.09004 * 109.46626 * 61.34724 * 24 22 19 39 39 H 0.96708 * 114.00099 * 180.02562 * 25 24 22 40 40 H 1.09002 * 110.36696 * 85.26398 * 26 17 14 41 41 H 1.08995 * 110.36608 * 323.05234 * 26 17 14 42 42 H 1.08004 * 119.99497 * 179.72990 * 27 13 12 43 43 H 1.08003 * 119.99855 * 0.02562 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 6 2.6796 -4.1698 1.1978 12 6 3.5775 -5.2208 1.1978 13 6 4.0260 -5.7468 0.0007 14 16 5.1711 -7.0859 0.0008 15 8 5.8464 -7.0365 1.2502 16 8 5.8449 -7.0378 -1.2493 17 7 4.2875 -8.4865 0.0021 18 6 3.8285 -9.2144 1.1975 19 6 3.0239 -10.4375 0.7094 20 1 2.1513 -10.6053 1.3405 21 8 3.8495 -11.6032 0.6712 22 6 2.5943 -10.0220 -0.7224 23 1 1.7029 -9.3951 -0.6970 24 6 2.3718 -11.2507 -1.6066 25 8 2.0087 -10.8307 -2.9232 26 6 3.8283 -9.2138 -1.1952 27 6 3.5809 -5.2180 -1.1964 28 6 2.6793 -4.1702 -1.1965 29 1 -0.4850 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8902 32 1 2.3288 -3.7592 2.1330 33 1 3.9287 -5.6309 2.1332 34 1 3.1914 -8.5689 1.8021 35 1 4.6853 -9.5446 1.7848 36 1 4.1453 -11.9045 1.5412 37 1 3.2899 -11.8364 -1.6523 38 1 1.5723 -11.8608 -1.1862 39 1 1.8515 -11.5594 -3.5392 40 1 4.6080 -9.8864 -1.5528 41 1 3.5445 -8.5123 -1.9796 42 1 3.9347 -5.6261 -2.1317 43 1 2.3284 -3.7597 -2.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414285174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:24 Heat of formation + Delta-G solvation = -178.170594 kcal Electronic energy + Delta-G solvation = -27641.372962 eV Core-core repulsion = 23584.052666 eV Total energy + Delta-G solvation = -4057.320295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.35514 -40.26400 -38.44403 -37.40261 -37.05641 -36.30043 -35.61571 -33.34482 -32.20690 -31.99982 -29.63873 -29.26556 -26.32071 -25.60752 -23.77020 -23.38831 -22.43952 -21.28930 -20.25068 -19.16602 -18.85170 -18.58581 -18.27316 -18.05770 -16.98270 -16.87963 -16.07997 -16.02980 -15.96386 -15.77472 -15.46872 -15.24355 -14.84714 -14.64884 -14.50645 -14.45861 -14.01661 -13.94650 -13.44655 -13.42603 -13.40082 -13.30136 -13.26005 -13.14220 -12.70198 -12.67552 -12.53280 -12.17904 -12.07422 -11.82941 -11.78452 -11.69190 -11.46931 -10.99978 -10.77613 -10.66634 -10.14018 -10.00100 -9.93746 -8.28397 -6.41238 -0.77752 -0.10315 0.36153 1.37659 1.37850 1.49428 1.88607 2.33700 2.53482 2.74791 2.97945 3.04277 3.18612 3.30879 3.55497 3.74267 3.88775 3.93172 4.11880 4.14114 4.29097 4.38393 4.42135 4.44377 4.50506 4.52983 4.63414 4.77433 4.77978 4.82047 4.87680 4.98223 5.05346 5.06566 5.20616 5.24340 5.25801 5.30066 5.33551 5.65718 5.83223 5.89098 6.08065 6.70400 6.93773 6.97920 7.27926 8.81736 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.002723 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.511019 B =10278.605688 C =10868.190139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.535 4.535 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.002 4.002 11 C -0.153 4.153 12 C -0.018 4.018 13 C -0.702 4.702 14 S 2.735 3.265 15 O -0.975 6.975 16 O -0.982 6.982 17 N -1.008 6.008 18 C 0.077 3.923 19 C 0.115 3.885 20 H 0.113 0.887 21 O -0.569 6.569 22 C -0.096 4.096 23 H 0.103 0.897 24 C 0.096 3.904 25 O -0.597 6.597 26 C 0.128 3.872 27 C -0.021 4.021 28 C -0.154 4.154 29 H 0.268 0.732 30 H 0.013 0.987 31 H 0.015 0.985 32 H 0.133 0.867 33 H 0.158 0.842 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.401 0.599 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.398 0.602 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.150 0.850 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.424 -27.206 1.672 27.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.573 4.573 8 H 0.071 0.929 9 C 0.012 3.988 10 C -0.002 4.002 11 C -0.171 4.171 12 C -0.037 4.037 13 C -0.789 4.789 14 S 2.828 3.172 15 O -0.966 6.966 16 O -0.972 6.972 17 N -0.848 5.848 18 C -0.048 4.048 19 C 0.054 3.946 20 H 0.130 0.870 21 O -0.378 6.378 22 C -0.117 4.117 23 H 0.121 0.879 24 C 0.018 3.982 25 O -0.406 6.406 26 C 0.003 3.997 27 C -0.040 4.040 28 C -0.173 4.173 29 H 0.077 0.923 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.151 0.849 33 H 0.175 0.825 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.252 0.748 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.248 0.752 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.167 0.833 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.215 -26.314 1.327 26.858 hybrid contribution -0.536 1.240 0.189 1.365 sum 4.679 -25.073 1.517 25.551 Atomic orbital electron populations 1.70051 1.07513 1.28178 1.50662 1.25857 0.95773 1.02941 0.94308 0.85458 0.78586 0.78501 0.78611 1.19717 1.20199 1.19248 1.21288 0.93051 0.91047 1.51893 0.92860 1.18264 0.92942 0.90647 0.96950 1.20836 0.93233 0.92290 0.93870 1.21322 0.99694 0.97877 0.98247 1.21027 0.92107 0.93542 0.97005 1.30835 1.24474 1.23984 0.99626 1.00471 0.72795 0.71693 0.72268 1.93521 1.71443 1.86852 1.44777 1.93526 1.71680 1.86864 1.45170 1.58459 1.73235 1.38489 1.14581 1.22929 1.00162 0.94982 0.86720 1.22700 0.92806 0.83718 0.95349 0.86962 1.86456 1.70464 1.43964 1.36913 1.22533 0.97918 0.97104 0.94099 0.87889 1.21875 0.99800 0.94359 0.82142 1.86442 1.92252 1.39366 1.22508 1.22083 0.96235 0.95183 0.86190 1.20987 0.92329 0.93645 0.97075 1.21293 0.99699 0.97961 0.98343 0.92333 0.96887 0.96626 0.84889 0.82466 0.89149 0.89297 0.74792 0.92363 0.91681 0.75221 0.90987 0.90984 0.83274 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.31 13.29 21.45 0.28 -54.03 16 2 C 0.01 0.58 5.46 84.65 0.46 1.04 16 3 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.54 -30.01 9.09 25.60 0.23 -29.78 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 9 C 0.05 2.52 5.10 29.10 0.15 2.67 16 10 C 0.00 -0.08 5.07 -19.86 -0.10 -0.18 16 11 C -0.15 -5.71 9.70 22.27 0.22 -5.49 16 12 C -0.02 -0.56 9.52 22.27 0.21 -0.35 16 13 C -0.70 -22.01 5.97 22.27 0.13 -21.87 16 14 S 2.73 76.92 5.94 -56.49 -0.34 76.58 16 15 O -0.98 -30.42 16.88 -128.00 -2.16 -32.58 16 16 O -0.98 -32.71 16.86 -128.00 -2.16 -34.87 16 17 N -1.01 -21.24 3.71 -505.79 -1.88 -23.12 16 18 C 0.08 1.09 6.78 86.68 0.59 1.68 16 19 C 0.11 1.16 4.09 31.78 0.13 1.29 16 20 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 21 O -0.57 -5.29 12.09 -148.98 -1.80 -7.09 16 22 C -0.10 -1.42 3.25 -9.40 -0.03 -1.45 16 23 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 24 C 0.10 1.23 6.10 71.98 0.44 1.67 16 25 O -0.60 -9.04 13.51 -148.98 -2.01 -11.06 16 26 C 0.13 2.56 6.30 86.85 0.55 3.11 16 27 C -0.02 -0.71 9.52 22.27 0.21 -0.49 16 28 C -0.15 -5.95 9.70 22.27 0.22 -5.74 16 29 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.01 0.70 8.09 -2.38 -0.02 0.68 16 31 H 0.02 0.84 8.09 -2.39 -0.02 0.82 16 32 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 33 H 0.16 4.01 7.62 -2.91 -0.02 3.99 16 34 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.09 1.12 8.07 -2.39 -0.02 1.10 16 36 H 0.40 0.41 9.12 -74.06 -0.68 -0.27 16 37 H 0.06 0.77 7.42 -2.39 -0.02 0.75 16 38 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.40 2.46 9.12 -74.05 -0.68 1.78 16 40 H 0.07 1.47 8.00 -2.39 -0.02 1.45 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.15 4.31 7.61 -2.91 -0.02 4.28 16 43 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -76.95 374.81 -4.93 -81.88 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -0.31 Total: 12.33 kcal Atomic # 6 Polarization: -57.32 SS G_CDS: 3.41 Total: -53.92 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -1.59 Total: -77.15 kcal Atomic # 8 Polarization: -77.46 SS G_CDS: -8.13 Total: -85.59 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 76.92 SS G_CDS: -0.34 Total: 76.58 kcal Total: -76.95 -4.93 -81.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414285174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.290 kcal (2) G-P(sol) polarization free energy of solvation -76.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds