Wall clock time and date at job start Sat Apr 11 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00258 * 2 1 4 4 H 1.48498 * 109.47412 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47104 * 300.00327 * 3 2 1 6 6 H 1.48500 * 109.47267 * 60.00187 * 3 2 1 7 7 C 1.37887 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99935 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99680 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.38234 * 120.00271 * 89.99486 * 10 9 7 12 12 C 1.38230 * 119.99880 * 179.97438 * 11 10 9 13 13 C 1.38235 * 120.00326 * 359.97438 * 12 11 10 14 14 S 1.76199 * 120.00342 * 179.72305 * 13 12 11 15 15 O 1.42099 * 106.40466 * 203.54194 * 14 13 12 16 16 O 1.42098 * 106.40181 * 336.46004 * 14 13 12 17 17 N 1.65602 * 107.21888 * 89.99875 * 14 13 12 18 18 C 1.47016 * 125.64668 * 90.00129 * 17 14 13 19 19 C 1.54329 * 107.26943 * 181.02141 * 18 17 14 20 20 H 1.08997 * 110.72031 * 263.65146 * 19 18 17 21 21 C 1.52996 * 110.71760 * 140.55853 * 19 18 17 22 22 O 1.42896 * 109.47696 * 66.45272 * 21 19 18 23 23 C 1.55150 * 102.93981 * 22.19539 * 19 18 17 24 24 H 1.09004 * 111.00085 * 206.42077 * 23 19 18 25 25 O 1.42897 * 111.00684 * 82.61190 * 23 19 18 26 26 C 1.47424 * 125.64724 * 269.69297 * 17 14 13 27 27 C 1.38234 * 119.99814 * 359.97438 * 13 12 11 28 28 C 1.38234 * 119.99485 * 269.97614 * 10 9 7 29 29 H 0.97002 * 119.99932 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47297 * 59.99924 * 9 7 2 31 31 H 1.09009 * 109.47307 * 299.99954 * 9 7 2 32 32 H 1.08001 * 119.99769 * 359.97438 * 11 10 9 33 33 H 1.08000 * 120.00376 * 180.02562 * 12 11 10 34 34 H 1.08998 * 109.88670 * 300.44101 * 18 17 14 35 35 H 1.09005 * 109.88294 * 61.60557 * 18 17 14 36 36 H 1.09006 * 109.47064 * 186.45626 * 21 19 18 37 37 H 1.09005 * 109.47562 * 306.45468 * 21 19 18 38 38 H 0.96704 * 114.00790 * 179.97438 * 22 21 19 39 39 H 0.96701 * 114.00188 * 180.02562 * 25 23 19 40 40 H 1.09003 * 110.36524 * 274.74582 * 26 17 14 41 41 H 1.08996 * 110.36386 * 37.07054 * 26 17 14 42 42 H 1.08001 * 120.00299 * 179.97438 * 27 13 12 43 43 H 1.07997 * 120.00489 * 0.02562 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6796 -4.1700 1.1966 12 6 3.5774 -5.2210 1.1965 13 6 4.0256 -5.7471 -0.0007 14 16 5.1757 -7.0820 -0.0008 15 8 5.8470 -7.0332 -1.2523 16 8 5.8531 -7.0282 1.2471 17 7 4.2972 -8.4859 0.0042 18 6 3.8398 -9.2146 -1.1879 19 6 3.0419 -10.4411 -0.6970 20 1 3.6750 -11.3280 -0.6716 21 6 1.8161 -10.6785 -1.5811 22 8 2.2403 -11.0577 -2.8919 23 6 2.6137 -10.0263 0.7354 24 1 2.4606 -10.9020 1.3663 25 8 1.4411 -9.2103 0.7034 26 6 3.8499 -9.2152 1.2048 27 6 3.5756 -5.2225 -1.1978 28 6 2.6790 -4.1702 -1.1977 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.3291 -3.7592 2.1319 33 1 3.9281 -5.6318 2.1317 34 1 3.1984 -8.5725 -1.7916 35 1 4.6983 -9.5415 -1.7747 36 1 1.2071 -11.4742 -1.1518 37 1 1.2279 -9.7627 -1.6404 38 1 1.5135 -11.2251 -3.5076 39 1 1.1357 -8.9261 1.5758 40 1 4.6348 -9.8848 1.5563 41 1 3.5674 -8.5148 1.9907 42 1 3.9260 -5.6332 -2.1332 43 1 2.3281 -3.7598 -2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414285190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:31 Heat of formation + Delta-G solvation = -177.642737 kcal Electronic energy + Delta-G solvation = -27901.730536 eV Core-core repulsion = 23844.433130 eV Total energy + Delta-G solvation = -4057.297406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34540 -40.25135 -38.43905 -37.40028 -37.05338 -36.24171 -35.61335 -33.33933 -32.23807 -31.99286 -29.62884 -29.26074 -26.30493 -25.60072 -23.76724 -23.35491 -22.43183 -21.25133 -20.24510 -19.26228 -18.64170 -18.49745 -18.40732 -18.05866 -16.96513 -16.89292 -16.37276 -16.00107 -15.97455 -15.62503 -15.38091 -15.23786 -15.01383 -14.65086 -14.49838 -14.20592 -13.98313 -13.90876 -13.46620 -13.42622 -13.41615 -13.28462 -13.24198 -13.07603 -12.69992 -12.68185 -12.47407 -12.21286 -12.07253 -11.97371 -11.75685 -11.66467 -11.46797 -11.00575 -10.79364 -10.66963 -10.06209 -9.98980 -9.89959 -8.28401 -6.41128 -0.75517 -0.08624 0.37159 1.36406 1.37885 1.50690 1.90048 2.33853 2.53988 2.76031 2.98419 3.04182 3.23527 3.33870 3.47490 3.76047 3.88690 3.92876 4.13343 4.21274 4.27924 4.37259 4.42383 4.44716 4.52686 4.57970 4.67401 4.77760 4.78770 4.81806 4.87741 4.99103 5.06321 5.07835 5.20663 5.24495 5.24587 5.30596 5.37206 5.65928 5.83670 5.89978 6.08436 6.70632 6.92914 6.94928 7.27998 8.81888 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016083 B = 0.002928 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.514537 B = 9559.121069 C =10187.284337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.002 4.002 11 C -0.151 4.151 12 C -0.016 4.016 13 C -0.700 4.700 14 S 2.734 3.266 15 O -0.984 6.984 16 O -0.975 6.975 17 N -1.005 6.005 18 C 0.126 3.874 19 C -0.088 4.088 20 H 0.119 0.881 21 C 0.093 3.907 22 O -0.595 6.595 23 C 0.107 3.893 24 H 0.119 0.881 25 O -0.572 6.572 26 C 0.077 3.923 27 C -0.022 4.022 28 C -0.155 4.155 29 H 0.268 0.732 30 H 0.012 0.988 31 H 0.016 0.984 32 H 0.133 0.867 33 H 0.157 0.843 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.397 0.603 39 H 0.397 0.603 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.147 0.853 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 -26.202 2.023 26.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.071 0.929 9 C 0.012 3.988 10 C -0.002 4.002 11 C -0.170 4.170 12 C -0.035 4.035 13 C -0.787 4.787 14 S 2.827 3.173 15 O -0.974 6.974 16 O -0.965 6.965 17 N -0.845 5.845 18 C 0.001 3.999 19 C -0.108 4.108 20 H 0.137 0.863 21 C 0.015 3.985 22 O -0.403 6.403 23 C 0.047 3.953 24 H 0.137 0.863 25 O -0.380 6.380 26 C -0.047 4.047 27 C -0.041 4.041 28 C -0.174 4.174 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.151 0.849 33 H 0.175 0.825 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.247 0.753 39 H 0.248 0.752 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.164 0.836 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.806 -25.962 1.656 26.455 hybrid contribution -1.227 1.894 0.109 2.260 sum 3.579 -24.068 1.765 24.396 Atomic orbital electron populations 1.70057 1.07501 1.28106 1.50716 1.25862 0.95780 1.02944 0.94318 0.85399 0.78773 0.78777 0.78128 1.19307 1.20054 1.19895 1.21313 0.93031 0.91043 1.51797 0.92903 1.18261 0.92932 0.90666 0.96917 1.20819 0.93232 0.92335 0.93853 1.21304 0.99666 0.97858 0.98190 1.20996 0.92114 0.93500 0.96908 1.30835 1.24347 1.23937 0.99599 1.00492 0.72827 0.71765 0.72263 1.93520 1.71959 1.86865 1.45092 1.93527 1.71331 1.86851 1.44806 1.58369 1.73269 1.38277 1.14561 1.21824 0.98479 0.93394 0.86224 1.22404 0.96793 0.97776 0.93803 0.86273 1.21938 0.94785 0.99274 0.82526 1.86407 1.39300 1.91625 1.22981 1.23026 0.83789 0.93169 0.95346 0.86315 1.86497 1.43575 1.71507 1.36467 1.23199 0.98211 0.96685 0.86629 1.20954 0.92444 0.93676 0.97046 1.21277 0.99819 0.97939 0.98345 0.92341 0.96966 0.96604 0.84863 0.82509 0.92380 0.91037 0.91478 0.93661 0.75314 0.75186 0.88098 0.89103 0.83564 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.28 13.29 21.45 0.28 -53.99 16 2 C 0.01 0.56 5.46 84.66 0.46 1.02 16 3 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.53 -30.04 9.09 25.60 0.23 -29.81 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.05 2.55 5.10 29.10 0.15 2.70 16 10 C 0.00 -0.09 5.07 -19.87 -0.10 -0.19 16 11 C -0.15 -5.69 9.70 22.27 0.22 -5.47 16 12 C -0.02 -0.51 9.52 22.27 0.21 -0.30 16 13 C -0.70 -22.32 5.97 22.27 0.13 -22.19 16 14 S 2.73 77.35 5.94 -56.49 -0.34 77.02 16 15 O -0.98 -33.03 16.86 -128.00 -2.16 -35.19 16 16 O -0.97 -30.26 16.87 -128.00 -2.16 -32.41 16 17 N -1.01 -21.03 3.70 -506.02 -1.87 -22.90 16 18 C 0.13 2.51 6.44 86.73 0.56 3.06 16 19 C -0.09 -1.18 3.16 -9.61 -0.03 -1.21 16 20 H 0.12 1.22 8.14 -2.39 -0.02 1.21 16 21 C 0.09 1.27 5.95 71.98 0.43 1.70 16 22 O -0.59 -8.90 13.50 -148.98 -2.01 -10.91 16 23 C 0.11 1.08 4.16 32.06 0.13 1.22 16 24 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 25 O -0.57 -7.63 12.23 -148.98 -1.82 -9.45 16 26 C 0.08 1.04 6.74 86.93 0.59 1.63 16 27 C -0.02 -0.75 9.52 22.27 0.21 -0.54 16 28 C -0.15 -6.09 9.70 22.27 0.22 -5.88 16 29 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.01 0.66 8.09 -2.39 -0.02 0.64 16 31 H 0.02 0.85 8.09 -2.38 -0.02 0.83 16 32 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 33 H 0.16 4.00 7.62 -2.91 -0.02 3.98 16 34 H 0.06 1.30 7.76 -2.39 -0.02 1.29 16 35 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.05 0.78 7.44 -2.38 -0.02 0.76 16 38 H 0.40 2.72 9.12 -74.05 -0.68 2.04 16 39 H 0.40 2.53 9.12 -74.06 -0.68 1.86 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 42 H 0.15 4.38 7.62 -2.91 -0.02 4.36 16 43 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -77.39 374.69 -4.94 -82.33 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -0.31 Total: 13.83 kcal Atomic # 6 Polarization: -57.67 SS G_CDS: 3.41 Total: -54.26 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -1.59 Total: -76.89 kcal Atomic # 8 Polarization: -79.81 SS G_CDS: -8.15 Total: -87.96 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 77.35 SS G_CDS: -0.34 Total: 77.02 kcal Total: -77.39 -4.94 -82.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414285190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.310 kcal (2) G-P(sol) polarization free energy of solvation -77.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds