Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00034 * 2 1 4 4 H 1.48508 * 109.47300 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47278 * 300.00049 * 3 2 1 6 6 H 1.48505 * 109.47103 * 60.00195 * 3 2 1 7 7 C 1.37882 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00099 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99742 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38240 * 119.99698 * 89.99921 * 10 9 7 12 12 C 1.38232 * 119.99347 * 179.97438 * 11 10 9 13 13 C 1.38228 * 120.00677 * 0.02562 * 12 11 10 14 14 S 1.76205 * 120.00310 * 179.97438 * 13 12 11 15 15 O 1.42101 * 106.40009 * 336.45936 * 14 13 12 16 16 O 1.42095 * 106.40306 * 203.53801 * 14 13 12 17 17 N 1.65603 * 107.21771 * 89.99718 * 14 13 12 18 18 C 1.46922 * 120.62766 * 270.02359 * 17 14 13 19 19 C 1.53194 * 108.77483 * 126.37436 * 18 17 14 20 20 C 1.53034 * 109.31582 * 54.62871 * 19 18 17 21 21 H 1.08999 * 109.45694 * 58.65926 * 20 19 18 22 22 O 1.42896 * 109.46156 * 178.61533 * 20 19 18 23 23 C 1.53041 * 109.54082 * 298.63968 * 20 19 18 24 24 H 1.09002 * 109.50018 * 181.31367 * 23 20 19 25 25 O 1.42900 * 109.51921 * 301.39471 * 23 20 19 26 26 C 1.46926 * 120.62929 * 89.99918 * 17 14 13 27 27 C 1.38240 * 119.99879 * 0.25178 * 13 12 11 28 28 C 1.38231 * 119.99932 * 270.02497 * 10 9 7 29 29 H 0.96997 * 119.99523 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47201 * 59.99839 * 9 7 2 31 31 H 1.08995 * 109.47542 * 299.99836 * 9 7 2 32 32 H 1.07989 * 119.99763 * 0.02562 * 11 10 9 33 33 H 1.08006 * 119.99066 * 180.02562 * 12 11 10 34 34 H 1.09000 * 109.58539 * 246.15234 * 18 17 14 35 35 H 1.09001 * 109.59338 * 6.44237 * 18 17 14 36 36 H 1.09002 * 109.49617 * 174.58379 * 19 18 17 37 37 H 1.09008 * 109.49346 * 294.64428 * 19 18 17 38 38 H 0.96697 * 114.00279 * 300.06895 * 22 20 19 39 39 H 0.96703 * 113.99826 * 179.91670 * 25 23 20 40 40 H 1.09003 * 109.58070 * 113.84311 * 26 17 14 41 41 H 1.08993 * 109.58530 * 353.42186 * 26 17 14 42 42 H 1.08003 * 120.00006 * 179.73403 * 27 13 12 43 43 H 1.07995 * 120.00284 * 359.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6447 0.0005 11 6 2.6795 -4.1700 1.1978 12 6 3.5773 -5.2210 1.1977 13 6 4.0265 -5.7464 0.0006 14 16 5.1715 -7.0857 0.0006 15 8 5.8461 -7.0369 1.2504 16 8 5.8460 -7.0370 -1.2491 17 7 4.2877 -8.4862 0.0007 18 6 3.8879 -9.1189 1.2650 19 6 2.3712 -9.3340 1.2507 20 6 1.9843 -10.1276 0.0007 21 1 2.5081 -11.0835 0.0010 22 8 0.5740 -10.3580 0.0006 23 6 2.3715 -9.3344 -1.2495 24 1 2.0746 -9.8897 -2.1392 25 8 1.7102 -8.0677 -1.2351 26 6 3.8881 -9.1193 -1.2635 27 6 3.5818 -5.2173 -1.1966 28 6 2.6799 -4.1696 -1.1966 29 1 -0.4849 0.8401 0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5568 0.8902 32 1 2.3283 -3.7598 2.1329 33 1 3.9279 -5.6317 2.1331 34 1 4.3921 -10.0797 1.3683 35 1 4.1594 -8.4721 2.0993 36 1 2.0740 -9.8891 2.1405 37 1 1.8668 -8.3677 1.2393 38 1 0.2568 -10.8567 0.7659 39 1 1.9113 -7.5103 -1.9993 40 1 4.3926 -10.0801 -1.3663 41 1 4.1577 -8.4716 -2.0976 42 1 3.9360 -5.6250 -2.1319 43 1 2.3290 -3.7593 -2.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414324913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = -149.573127 kcal Electronic energy + Delta-G solvation = -28614.956614 eV Core-core repulsion = 24558.876397 eV Total energy + Delta-G solvation = -4056.080216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.69521 -38.74873 -37.28935 -36.36565 -35.84374 -35.63477 -33.65053 -31.52731 -31.33954 -30.53886 -30.22960 -27.40104 -24.50361 -23.72754 -23.63651 -22.29734 -20.98227 -20.51938 -19.22169 -18.15414 -17.69034 -17.47903 -16.69768 -16.42849 -16.02274 -15.43926 -15.19043 -15.05167 -14.95394 -14.35612 -14.35332 -14.25559 -13.75932 -13.41707 -13.27833 -13.07957 -12.83742 -12.58316 -12.25491 -12.21611 -12.15834 -12.04860 -11.79436 -11.68368 -11.47905 -11.46469 -10.95785 -10.91423 -10.77468 -10.56336 -10.46389 -10.41332 -10.11674 -9.71609 -9.62469 -9.20403 -8.55016 -8.51655 -8.32197 -6.15509 -4.20393 0.41650 1.38284 1.84410 2.87406 3.23967 3.31986 3.37198 3.69844 3.83535 3.98199 4.11992 4.23056 4.31407 4.39784 4.51996 4.66087 4.74578 4.91326 5.11493 5.16513 5.19043 5.21315 5.24014 5.25029 5.28499 5.39191 5.51348 5.75705 5.80653 5.82665 5.95220 6.07983 6.28139 6.29654 6.36464 6.55741 6.87611 6.94828 7.33105 7.34982 7.47550 7.52687 7.62871 7.79856 8.15494 8.84794 9.44514 10.94547 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016165 B = 0.003289 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.702120 B = 8511.981980 C = 9358.589557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.028 3.972 11 C -0.143 4.143 12 C -0.021 4.021 13 C -0.694 4.694 14 S 2.694 3.306 15 O -0.963 6.963 16 O -0.965 6.965 17 N -0.993 5.993 18 C 0.125 3.875 19 C -0.167 4.167 20 C 0.118 3.882 21 H 0.065 0.935 22 O -0.557 6.557 23 C 0.097 3.903 24 H 0.070 0.930 25 O -0.540 6.540 26 C 0.091 3.909 27 C -0.023 4.023 28 C -0.142 4.142 29 H 0.263 0.737 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.376 0.624 39 H 0.376 0.624 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.125 0.875 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.101 -23.494 -0.193 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.003 3.997 10 C 0.027 3.973 11 C -0.162 4.162 12 C -0.041 4.041 13 C -0.784 4.784 14 S 2.789 3.211 15 O -0.954 6.954 16 O -0.955 6.955 17 N -0.830 5.830 18 C 0.000 4.000 19 C -0.206 4.206 20 C 0.059 3.941 21 H 0.083 0.917 22 O -0.362 6.362 23 C 0.036 3.964 24 H 0.088 0.912 25 O -0.345 6.345 26 C -0.035 4.035 27 C -0.043 4.043 28 C -0.161 4.161 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.223 0.777 39 H 0.223 0.777 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.143 0.857 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.691 -23.250 -0.189 23.937 hybrid contribution -0.113 1.256 0.032 1.262 sum 5.578 -21.994 -0.156 22.691 Atomic orbital electron populations 1.69961 1.06063 1.26973 1.49955 1.25004 0.94914 0.99374 0.94860 0.86438 0.80146 0.83172 0.77738 1.19587 1.20815 1.20811 1.21018 0.93117 0.89506 1.51824 0.92264 1.18533 0.92663 0.89537 0.99015 1.21072 0.92118 0.92009 0.92073 1.21205 0.98993 0.97166 0.98833 1.20688 0.93276 0.94553 0.95559 1.30240 1.24937 1.23314 0.99942 1.01722 0.73687 0.72431 0.73242 1.93548 1.71248 1.86489 1.44075 1.93543 1.71297 1.86551 1.44130 1.57731 1.72950 1.40951 1.11375 1.21375 0.94466 0.99116 0.85052 1.22602 0.96565 1.03542 0.97897 1.21671 0.82310 0.95940 0.94179 0.91676 1.86611 1.21993 1.78553 1.49020 1.22108 0.90443 0.86265 0.97554 0.91176 1.86673 1.70900 1.27700 1.49237 1.22185 0.95140 1.00160 0.85995 1.20654 0.93437 0.94753 0.95412 1.21191 0.98958 0.97186 0.98775 0.92707 0.94738 0.94776 0.85545 0.85660 0.90934 0.88640 0.90645 0.88993 0.77704 0.77738 0.89874 0.88159 0.85689 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 13.29 55.43 0.74 -24.96 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.09 9.09 -34.44 -0.31 -14.41 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.04 0.97 5.10 -29.03 -0.15 0.82 16 10 C 0.03 0.58 5.07 -104.62 -0.53 0.04 16 11 C -0.14 -2.69 9.70 -39.58 -0.38 -3.08 16 12 C -0.02 -0.35 9.52 -39.59 -0.38 -0.73 16 13 C -0.69 -10.82 5.97 -39.58 -0.24 -11.06 16 14 S 2.69 37.14 5.69 -107.50 -0.61 36.53 16 15 O -0.96 -15.36 16.00 -57.17 -0.91 -16.28 16 16 O -0.96 -14.98 15.99 -57.17 -0.91 -15.89 16 17 N -0.99 -10.07 3.23 -113.53 -0.37 -10.44 16 18 C 0.13 1.06 6.38 -3.71 -0.02 1.04 16 19 C -0.17 -1.38 5.56 -26.61 -0.15 -1.53 16 20 C 0.12 0.96 3.21 -26.69 -0.09 0.87 16 21 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 22 O -0.56 -5.25 13.24 -43.51 -0.58 -5.82 16 23 C 0.10 0.84 3.48 -26.61 -0.09 0.75 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 O -0.54 -6.12 12.44 -43.51 -0.54 -6.66 16 26 C 0.09 0.74 6.02 -3.71 -0.02 0.71 16 27 C -0.02 -0.36 9.52 -39.58 -0.38 -0.74 16 28 C -0.14 -2.60 9.70 -39.58 -0.38 -2.98 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 31 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 32 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 33 H 0.13 1.79 7.62 -52.48 -0.40 1.39 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.85 7.12 -51.93 -0.37 0.48 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 1.04 7.61 -51.92 -0.40 0.65 16 38 H 0.38 1.91 9.08 45.56 0.41 2.32 16 39 H 0.38 3.31 9.08 45.56 0.41 3.73 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.78 7.12 -51.93 -0.37 0.41 16 42 H 0.13 1.62 7.61 -52.48 -0.40 1.22 16 43 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -35.50 368.83 -10.32 -45.82 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -4.45 Total: 4.64 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -3.22 Total: -28.69 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.37 Total: -35.40 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -2.95 Total: -44.65 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 37.14 SS G_CDS: -0.61 Total: 36.53 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.50 -10.32 -45.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414324913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.752 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds