Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00034 * 2 1 4 4 H 1.48508 * 109.47300 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47278 * 300.00049 * 3 2 1 6 6 H 1.48505 * 109.47103 * 60.00195 * 3 2 1 7 7 C 1.37882 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00099 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99742 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38240 * 119.99698 * 89.99921 * 10 9 7 12 12 C 1.38232 * 119.99347 * 179.97438 * 11 10 9 13 13 C 1.38228 * 120.00677 * 0.02562 * 12 11 10 14 14 S 1.76205 * 120.00310 * 179.97438 * 13 12 11 15 15 O 1.42101 * 106.40009 * 336.45936 * 14 13 12 16 16 O 1.42095 * 106.40306 * 203.53801 * 14 13 12 17 17 N 1.65603 * 107.21771 * 89.99718 * 14 13 12 18 18 C 1.46922 * 120.62766 * 270.02359 * 17 14 13 19 19 C 1.53194 * 108.77483 * 126.37436 * 18 17 14 20 20 C 1.53034 * 109.31582 * 54.62871 * 19 18 17 21 21 H 1.08999 * 109.45694 * 58.65926 * 20 19 18 22 22 O 1.42896 * 109.46156 * 178.61533 * 20 19 18 23 23 C 1.53041 * 109.54082 * 298.63968 * 20 19 18 24 24 H 1.09002 * 109.50018 * 181.31367 * 23 20 19 25 25 O 1.42900 * 109.51921 * 301.39471 * 23 20 19 26 26 C 1.46926 * 120.62929 * 89.99918 * 17 14 13 27 27 C 1.38240 * 119.99879 * 0.25178 * 13 12 11 28 28 C 1.38231 * 119.99932 * 270.02497 * 10 9 7 29 29 H 0.96997 * 119.99523 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47201 * 59.99839 * 9 7 2 31 31 H 1.08995 * 109.47542 * 299.99836 * 9 7 2 32 32 H 1.07989 * 119.99763 * 0.02562 * 11 10 9 33 33 H 1.08006 * 119.99066 * 180.02562 * 12 11 10 34 34 H 1.09000 * 109.58539 * 246.15234 * 18 17 14 35 35 H 1.09001 * 109.59338 * 6.44237 * 18 17 14 36 36 H 1.09002 * 109.49617 * 174.58379 * 19 18 17 37 37 H 1.09008 * 109.49346 * 294.64428 * 19 18 17 38 38 H 0.96697 * 114.00279 * 300.06895 * 22 20 19 39 39 H 0.96703 * 113.99826 * 179.91670 * 25 23 20 40 40 H 1.09003 * 109.58070 * 113.84311 * 26 17 14 41 41 H 1.08993 * 109.58530 * 353.42186 * 26 17 14 42 42 H 1.08003 * 120.00006 * 179.73403 * 27 13 12 43 43 H 1.07995 * 120.00284 * 359.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6447 0.0005 11 6 2.6795 -4.1700 1.1978 12 6 3.5773 -5.2210 1.1977 13 6 4.0265 -5.7464 0.0006 14 16 5.1715 -7.0857 0.0006 15 8 5.8461 -7.0369 1.2504 16 8 5.8460 -7.0370 -1.2491 17 7 4.2877 -8.4862 0.0007 18 6 3.8879 -9.1189 1.2650 19 6 2.3712 -9.3340 1.2507 20 6 1.9843 -10.1276 0.0007 21 1 2.5081 -11.0835 0.0010 22 8 0.5740 -10.3580 0.0006 23 6 2.3715 -9.3344 -1.2495 24 1 2.0746 -9.8897 -2.1392 25 8 1.7102 -8.0677 -1.2351 26 6 3.8881 -9.1193 -1.2635 27 6 3.5818 -5.2173 -1.1966 28 6 2.6799 -4.1696 -1.1966 29 1 -0.4849 0.8401 0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5568 0.8902 32 1 2.3283 -3.7598 2.1329 33 1 3.9279 -5.6317 2.1331 34 1 4.3921 -10.0797 1.3683 35 1 4.1594 -8.4721 2.0993 36 1 2.0740 -9.8891 2.1405 37 1 1.8668 -8.3677 1.2393 38 1 0.2568 -10.8567 0.7659 39 1 1.9113 -7.5103 -1.9993 40 1 4.3926 -10.0801 -1.3663 41 1 4.1577 -8.4716 -2.0976 42 1 3.9360 -5.6250 -2.1319 43 1 2.3290 -3.7593 -2.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414324913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = -178.540016 kcal Electronic energy + Delta-G solvation = -28616.212712 eV Core-core repulsion = 24558.876397 eV Total energy + Delta-G solvation = -4057.336315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.36920 -40.16412 -38.45091 -37.05581 -36.98164 -36.41757 -35.59148 -33.29923 -32.03129 -31.91122 -30.90897 -29.23246 -25.60593 -25.14039 -24.34442 -23.67258 -22.45525 -21.35744 -20.14128 -19.21398 -18.66670 -18.51558 -18.34080 -17.47205 -17.01932 -16.85328 -16.20611 -16.06427 -15.97408 -15.80126 -15.44448 -15.24274 -14.86272 -14.63067 -14.43922 -14.09592 -13.94896 -13.90030 -13.48548 -13.41631 -13.37587 -13.25053 -13.20010 -12.92960 -12.69088 -12.66123 -12.55255 -12.24735 -12.11533 -12.02588 -11.65405 -11.46355 -11.35565 -11.12891 -10.74823 -10.66649 -10.03168 -9.91432 -9.82910 -8.27578 -6.40689 -0.67073 -0.00514 0.44248 1.36656 1.37760 1.50817 1.89171 2.34508 2.58669 2.81162 3.04814 3.19123 3.25963 3.40215 3.61764 3.85701 3.90592 3.98024 4.01747 4.14701 4.18375 4.30905 4.46294 4.49786 4.52060 4.63897 4.69846 4.74081 4.79694 4.85583 4.90807 4.92131 5.12826 5.15797 5.25632 5.26228 5.36183 5.42465 5.56540 5.66726 5.88737 5.95640 6.10558 6.71517 6.84206 6.97724 7.28551 8.82788 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016165 B = 0.003289 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.702120 B = 8511.981980 C = 9358.589557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.005 4.005 11 C -0.156 4.156 12 C -0.020 4.020 13 C -0.693 4.693 14 S 2.717 3.283 15 O -0.982 6.982 16 O -0.978 6.978 17 N -0.985 5.985 18 C 0.118 3.882 19 C -0.162 4.162 20 C 0.113 3.887 21 H 0.098 0.902 22 O -0.582 6.582 23 C 0.090 3.910 24 H 0.083 0.917 25 O -0.568 6.568 26 C 0.087 3.913 27 C -0.014 4.014 28 C -0.150 4.150 29 H 0.267 0.733 30 H 0.012 0.988 31 H 0.009 0.991 32 H 0.123 0.877 33 H 0.148 0.852 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.392 0.608 39 H 0.381 0.619 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.158 0.842 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.077 -25.875 -0.452 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.571 4.571 8 H 0.072 0.928 9 C 0.012 3.988 10 C -0.005 4.005 11 C -0.175 4.175 12 C -0.039 4.039 13 C -0.780 4.780 14 S 2.809 3.191 15 O -0.973 6.973 16 O -0.968 6.968 17 N -0.824 5.824 18 C -0.007 4.007 19 C -0.201 4.201 20 C 0.055 3.945 21 H 0.116 0.884 22 O -0.390 6.390 23 C 0.029 3.971 24 H 0.101 0.899 25 O -0.375 6.375 26 C -0.038 4.038 27 C -0.033 4.033 28 C -0.169 4.169 29 H 0.076 0.924 30 H 0.030 0.970 31 H 0.027 0.973 32 H 0.141 0.859 33 H 0.166 0.834 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.242 0.758 39 H 0.229 0.771 40 H 0.135 0.865 41 H 0.121 0.879 42 H 0.175 0.825 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.649 -25.615 -0.442 26.736 hybrid contribution -0.737 1.795 0.117 1.944 sum 6.913 -23.819 -0.325 24.804 Atomic orbital electron populations 1.70072 1.07591 1.28077 1.50820 1.25882 0.95757 1.03014 0.94322 0.85390 0.78813 0.78715 0.78105 1.19163 1.19950 1.20052 1.21324 0.93046 0.91024 1.51673 0.92796 1.18243 0.92987 0.90928 0.96610 1.20771 0.93314 0.92393 0.94061 1.21233 0.99988 0.98220 0.98071 1.20907 0.92366 0.93535 0.97126 1.30826 1.23976 1.23775 0.99435 1.01091 0.73274 0.72366 0.72367 1.93523 1.71881 1.86900 1.44961 1.93524 1.71756 1.86901 1.44656 1.57506 1.72676 1.39113 1.13079 1.21651 0.94813 1.00328 0.83893 1.22548 0.96087 1.02100 0.99411 1.21868 0.82044 0.97129 0.93494 0.88435 1.86567 1.23017 1.79131 1.50333 1.22352 0.90656 0.85404 0.98658 0.89878 1.86660 1.71825 1.29087 1.49914 1.22462 0.94973 1.01575 0.84833 1.20940 0.92017 0.93343 0.96976 1.21255 0.99701 0.98059 0.97915 0.92383 0.96959 0.97310 0.85882 0.83421 0.87507 0.89292 0.88266 0.92680 0.75824 0.77062 0.86514 0.87885 0.82480 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 13.29 21.45 0.28 -54.84 16 2 C 0.01 0.52 5.46 84.66 0.46 0.98 16 3 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.53 -30.23 9.09 25.60 0.23 -30.00 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.05 2.60 5.10 29.10 0.15 2.75 16 10 C -0.01 -0.22 5.07 -19.86 -0.10 -0.32 16 11 C -0.16 -6.11 9.70 22.27 0.22 -5.89 16 12 C -0.02 -0.66 9.52 22.27 0.21 -0.45 16 13 C -0.69 -20.81 5.97 22.27 0.13 -20.68 16 14 S 2.72 68.55 5.69 -56.49 -0.32 68.23 16 15 O -0.98 -29.17 16.00 -128.00 -2.05 -31.22 16 16 O -0.98 -27.69 15.99 -128.00 -2.05 -29.74 16 17 N -0.98 -16.96 3.23 -513.09 -1.66 -18.62 16 18 C 0.12 1.62 6.38 86.36 0.55 2.17 16 19 C -0.16 -2.29 5.56 30.67 0.17 -2.12 16 20 C 0.11 1.49 3.21 30.62 0.10 1.59 16 21 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 22 O -0.58 -9.86 13.24 -141.06 -1.87 -11.73 16 23 C 0.09 1.32 3.48 30.67 0.11 1.43 16 24 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 25 O -0.57 -12.35 12.44 -141.06 -1.75 -14.10 16 26 C 0.09 1.09 6.02 86.36 0.52 1.61 16 27 C -0.01 -0.42 9.52 22.27 0.21 -0.20 16 28 C -0.15 -5.62 9.70 22.27 0.22 -5.40 16 29 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.01 0.68 8.09 -2.38 -0.02 0.66 16 31 H 0.01 0.48 8.09 -2.39 -0.02 0.47 16 32 H 0.12 4.72 8.06 -2.92 -0.02 4.70 16 33 H 0.15 4.08 7.62 -2.91 -0.02 4.05 16 34 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 1.37 7.12 -2.39 -0.02 1.35 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.05 1.21 7.61 -2.38 -0.02 1.19 16 38 H 0.39 3.20 9.08 -74.06 -0.67 2.53 16 39 H 0.38 6.48 9.08 -74.06 -0.67 5.81 16 40 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.10 1.27 7.12 -2.39 -0.02 1.25 16 42 H 0.16 3.72 7.61 -2.91 -0.02 3.69 16 43 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -78.53 368.83 -4.50 -83.03 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -0.30 Total: 17.36 kcal Atomic # 6 Polarization: -57.73 SS G_CDS: 3.18 Total: -54.55 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -1.37 Total: -73.45 kcal Atomic # 8 Polarization: -79.07 SS G_CDS: -7.72 Total: -86.79 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 68.55 SS G_CDS: -0.32 Total: 68.23 kcal Total: -78.53 -4.50 -83.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414324913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.505 kcal (2) G-P(sol) polarization free energy of solvation -78.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds