Wall clock time and date at job start Sat Apr 11 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86804 * 119.99746 * 2 1 4 4 H 1.48504 * 109.46964 * 272.71027 * 3 2 1 5 5 H 1.48495 * 109.47270 * 32.70763 * 3 2 1 6 6 H 1.48499 * 109.47059 * 152.70952 * 3 2 1 7 7 C 1.39940 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00126 * 347.95679 * 7 2 1 9 9 C 1.41393 * 119.99916 * 168.21998 * 7 2 1 10 10 C 1.40725 * 120.24768 * 328.08957 * 9 7 2 11 11 C 1.37597 * 119.74456 * 179.97438 * 10 9 7 12 12 C 1.38655 * 120.25210 * 0.02562 * 11 10 9 13 13 C 1.38620 * 120.49787 * 359.97438 * 12 11 10 14 14 C 1.37632 * 120.24661 * 359.71661 * 13 12 11 15 15 S 1.76202 * 120.12723 * 180.30384 * 14 13 12 16 16 O 1.42103 * 106.40259 * 228.78180 * 15 14 13 17 17 O 1.42095 * 106.40488 * 1.70471 * 15 14 13 18 18 N 1.65597 * 107.21934 * 115.24403 * 15 14 13 19 19 C 1.46927 * 120.63217 * 276.41936 * 18 15 14 20 20 C 1.52764 * 109.01105 * 233.58329 * 19 18 15 21 21 C 1.53037 * 109.38129 * 305.58868 * 20 19 18 22 22 H 1.09005 * 109.44479 * 181.25318 * 21 20 19 23 23 O 1.42904 * 109.46250 * 301.21648 * 21 20 19 24 24 C 1.53045 * 109.54009 * 61.23825 * 21 20 19 25 25 H 1.09001 * 109.49523 * 58.58434 * 24 21 20 26 26 C 1.53002 * 109.49584 * 178.67773 * 24 21 20 27 27 O 1.42901 * 109.46610 * 184.83628 * 26 24 21 28 28 C 1.46930 * 120.63211 * 96.70053 * 18 15 14 29 29 H 0.97002 * 120.00169 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.12972 * 359.96721 * 10 9 7 31 31 H 1.07998 * 119.87628 * 179.97438 * 11 10 9 32 32 H 1.07993 * 119.75518 * 180.02562 * 12 11 10 33 33 H 1.08005 * 119.87154 * 180.02562 * 13 12 11 34 34 H 1.08995 * 109.58449 * 353.42312 * 19 18 15 35 35 H 1.09003 * 109.58266 * 113.84210 * 19 18 15 36 36 H 1.08996 * 109.56180 * 185.55187 * 20 19 18 37 37 H 1.09002 * 109.38220 * 65.51091 * 20 19 18 38 38 H 0.96706 * 113.99769 * 300.07381 * 23 21 20 39 39 H 1.08996 * 109.47512 * 304.83770 * 26 24 21 40 40 H 1.09003 * 109.46568 * 64.84560 * 26 24 21 41 41 H 0.96706 * 113.99264 * 180.02562 * 27 26 24 42 42 H 1.08998 * 109.58635 * 246.15750 * 28 18 15 43 43 H 1.09003 * 109.58785 * 6.58016 * 28 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4324 2.0796 -1.3986 5 1 1.4695 2.6355 0.7565 6 1 3.5673 1.4244 0.6419 7 6 2.0081 -1.2119 0.0005 8 1 1.4860 -2.1369 0.1961 9 6 3.3997 -1.2248 -0.2494 10 6 3.9743 -0.2707 -1.1096 11 6 5.3297 -0.2924 -1.3451 12 6 6.1288 -1.2499 -0.7391 13 6 5.5736 -2.1946 0.1100 14 6 4.2211 -2.1878 0.3650 15 16 3.5199 -3.3851 1.4511 16 8 2.3942 -3.9291 0.7756 17 8 4.5996 -4.1779 1.9252 18 7 2.9275 -2.5685 2.7642 19 6 3.8115 -2.2022 3.8792 20 6 3.2104 -2.7244 5.1830 21 6 1.7758 -2.2102 5.3227 22 1 1.3535 -2.5639 6.2633 23 8 1.7788 -0.7812 5.3097 24 6 0.9304 -2.7289 4.1571 25 1 0.9479 -3.8187 4.1518 26 6 -0.5112 -2.2414 4.3154 27 8 -1.3238 -2.8171 3.2906 28 6 1.5067 -2.2018 2.8393 29 1 -0.4850 0.8400 -0.0004 30 1 3.3537 0.4757 -1.5831 31 1 5.7729 0.4385 -2.0052 32 1 7.1918 -1.2594 -0.9293 33 1 6.2055 -2.9356 0.5770 34 1 4.7947 -2.6475 3.7275 35 1 3.9035 -1.1173 3.9313 36 1 3.8063 -2.3738 6.0257 37 1 3.2065 -3.8143 5.1685 38 1 2.2966 -0.3825 6.0225 39 1 -0.8912 -2.5415 5.2919 40 1 -0.5384 -1.1548 4.2331 41 1 -2.2527 -2.5509 3.3292 42 1 1.4070 -1.1169 2.8049 43 1 0.9697 -2.6469 2.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424250214.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:42 Heat of formation + Delta-G solvation = -152.670259 kcal Electronic energy + Delta-G solvation = -30157.250943 eV Core-core repulsion = 26101.036425 eV Total energy + Delta-G solvation = -4056.214518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.21937 -37.84268 -36.44652 -36.24360 -35.25364 -34.85574 -33.78705 -31.64035 -30.85618 -30.57483 -30.08288 -25.64232 -25.27010 -23.95866 -22.12378 -21.77659 -21.14111 -19.84853 -18.14849 -17.69133 -17.22543 -17.04092 -16.78270 -16.29298 -15.51471 -15.28823 -14.77513 -14.50428 -14.26100 -14.22024 -13.91044 -13.79317 -13.52648 -13.29842 -12.96768 -12.84100 -12.30510 -12.26573 -11.87523 -11.84275 -11.52874 -11.41892 -11.27711 -11.21313 -11.12515 -10.95922 -10.80669 -10.66743 -10.56901 -10.33916 -10.03269 -9.92765 -9.77363 -9.61440 -9.45334 -9.21465 -8.33748 -8.15310 -7.78400 -7.11485 -4.82069 1.47444 2.11554 2.55825 2.97735 3.07740 3.17818 3.80189 3.84561 4.28700 4.30125 4.38916 4.73116 4.88091 5.00476 5.10670 5.15669 5.25477 5.47224 5.53319 5.60573 5.64931 5.69607 5.82496 5.85139 5.89597 5.93822 6.01865 6.20738 6.21789 6.31226 6.38673 6.44596 6.67828 6.82186 6.93218 6.99611 7.11839 7.20801 7.36747 7.47366 7.59221 7.71898 7.87843 7.94453 8.22567 8.36253 8.58641 9.85383 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010929 B = 0.006775 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.303270 B = 4131.869409 C = 5273.410695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.091 3.909 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.241 1.241 7 C -0.454 4.454 8 H 0.131 0.869 9 C 0.165 3.835 10 C -0.235 4.235 11 C -0.045 4.045 12 C -0.260 4.260 13 C 0.015 3.985 14 C -0.770 4.770 15 S 2.704 3.296 16 O -0.964 6.964 17 O -0.997 6.997 18 N -0.992 5.992 19 C 0.128 3.872 20 C -0.163 4.163 21 C 0.116 3.884 22 H 0.052 0.948 23 O -0.556 6.556 24 C -0.097 4.097 25 H 0.087 0.913 26 C 0.089 3.911 27 O -0.564 6.564 28 C 0.146 3.854 29 H 0.290 0.710 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.372 0.628 39 H 0.037 0.963 40 H 0.055 0.945 41 H 0.376 0.624 42 H 0.076 0.924 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.978 1.137 11.530 11.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.164 1.164 7 C -0.481 4.481 8 H 0.149 0.851 9 C 0.159 3.841 10 C -0.254 4.254 11 C -0.064 4.064 12 C -0.280 4.280 13 C -0.004 4.004 14 C -0.864 4.864 15 S 2.802 3.198 16 O -0.955 6.955 17 O -0.988 6.988 18 N -0.828 5.828 19 C 0.002 3.998 20 C -0.202 4.202 21 C 0.057 3.943 22 H 0.070 0.930 23 O -0.361 6.361 24 C -0.117 4.117 25 H 0.106 0.894 26 C 0.011 3.989 27 O -0.368 6.368 28 C 0.021 3.979 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.218 0.782 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.222 0.778 42 H 0.094 0.906 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.817 -0.081 10.739 10.770 hybrid contribution 0.376 1.979 0.330 2.041 sum 1.193 1.898 11.068 11.293 Atomic orbital electron populations 1.69664 1.07908 1.30647 1.31241 1.26170 0.94829 1.01468 0.90731 0.86415 0.81419 0.79734 0.79161 1.19525 1.21493 1.16373 1.20424 0.91178 0.97590 1.38925 0.85138 1.17093 0.92292 0.88128 0.86549 1.21216 0.95009 1.04207 1.04962 1.20817 0.93809 0.95904 0.95883 1.20484 0.98122 1.01504 1.07872 1.20388 0.92689 0.94544 0.92818 1.29977 1.02940 1.26878 1.26605 1.01033 0.72610 0.73513 0.72600 1.93509 1.51469 1.77156 1.73335 1.93429 1.56447 1.67601 1.81279 1.57578 1.16294 1.75934 1.33010 1.21065 0.92888 1.00494 0.85336 1.22488 0.96861 1.02292 0.98560 1.21652 0.94533 0.81172 0.96976 0.92990 1.86614 1.74969 1.18972 1.55526 1.21581 0.93009 1.00912 0.96194 0.89448 1.22017 0.90114 0.97455 0.89344 1.86576 1.23448 1.73123 1.53674 1.21381 0.78631 1.01266 0.96616 0.89941 0.87699 0.88367 0.88179 0.86983 0.89705 0.91290 0.90728 0.90515 0.78159 0.94487 0.92629 0.77827 0.90577 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.02 13.93 55.55 0.77 -18.25 16 2 C 0.09 2.24 5.47 -17.34 -0.09 2.15 16 3 Si 0.91 19.68 24.41 -169.99 -4.15 15.53 16 4 H -0.27 -5.69 6.69 56.52 0.38 -5.31 16 5 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.24 -5.37 6.66 56.52 0.38 -5.00 16 7 C -0.45 -11.74 7.24 -37.74 -0.27 -12.01 16 8 H 0.13 3.63 4.32 -52.49 -0.23 3.40 16 9 C 0.16 4.13 5.12 -106.83 -0.55 3.58 16 10 C -0.23 -5.55 6.98 -38.88 -0.27 -5.82 16 11 C -0.05 -0.97 10.02 -39.66 -0.40 -1.36 16 12 C -0.26 -5.40 10.05 -39.29 -0.39 -5.79 16 13 C 0.02 0.34 9.53 -39.66 -0.38 -0.04 16 14 C -0.77 -18.29 5.96 -38.87 -0.23 -18.53 16 15 S 2.70 60.87 5.10 -107.50 -0.55 60.33 16 16 O -0.96 -24.56 14.31 -57.17 -0.82 -25.37 16 17 O -1.00 -22.53 15.75 -57.17 -0.90 -23.43 16 18 N -0.99 -19.19 3.26 -113.77 -0.37 -19.56 16 19 C 0.13 2.00 6.19 -3.93 -0.02 1.97 16 20 C -0.16 -1.97 5.79 -26.83 -0.16 -2.12 16 21 C 0.12 1.43 3.19 -26.69 -0.09 1.35 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 23 O -0.56 -6.90 11.52 -35.23 -0.41 -7.31 16 24 C -0.10 -1.52 2.41 -90.50 -0.22 -1.74 16 25 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 26 C 0.09 1.29 6.23 37.16 0.23 1.52 16 27 O -0.56 -9.00 13.30 -35.23 -0.47 -9.47 16 28 C 0.15 2.87 3.79 -3.71 -0.01 2.86 16 29 H 0.29 6.42 8.30 -40.82 -0.34 6.09 16 30 H 0.11 2.42 4.49 -52.49 -0.24 2.18 16 31 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.11 2.24 7.33 -52.48 -0.38 1.86 16 34 H 0.08 1.30 7.08 -51.93 -0.37 0.93 16 35 H 0.07 1.04 7.81 -51.93 -0.41 0.63 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.37 2.91 9.08 45.56 0.41 3.32 16 39 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.84 7.86 -51.93 -0.41 0.43 16 41 H 0.38 4.16 9.12 45.56 0.42 4.58 16 42 H 0.08 1.60 7.80 -51.93 -0.40 1.20 16 43 H 0.11 2.53 5.34 -51.93 -0.28 2.25 16 LS Contribution 345.38 15.07 5.20 5.20 Total: -1.00 -32.24 345.38 -8.56 -40.80 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -4.02 Total: 15.50 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: -2.85 Total: -33.98 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.40 Total: -37.81 kcal Atomic # 8 Polarization: -62.99 SS G_CDS: -2.59 Total: -65.58 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.15 Total: 15.53 kcal Atomic # 16 Polarization: 60.87 SS G_CDS: -0.55 Total: 60.33 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.24 -8.56 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424250214.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.869 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds