Wall clock time and date at job start Sat Apr 11 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86795 * 119.99819 * 2 1 4 4 H 1.48501 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47103 * 299.99565 * 3 2 1 6 6 H 1.48496 * 109.47554 * 59.99648 * 3 2 1 7 7 C 1.39902 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99953 * 185.42193 * 7 2 1 9 9 C 1.41157 * 119.99782 * 5.42879 * 7 2 1 10 10 C 1.40867 * 120.16809 * 34.63919 * 9 7 2 11 11 C 1.36371 * 119.82826 * 180.25135 * 10 9 7 12 12 C 1.39485 * 120.16908 * 359.49830 * 11 10 9 13 13 N 1.39236 * 119.83269 * 180.23429 * 12 11 10 14 14 C 1.34774 * 120.00011 * 325.28270 * 13 12 11 15 15 O 1.21285 * 120.00143 * 354.42524 * 14 13 12 16 16 C 1.50698 * 120.00040 * 174.42470 * 14 13 12 17 17 H 1.09003 * 109.70730 * 54.41980 * 16 14 13 18 18 C 1.53463 * 109.70883 * 293.79227 * 16 14 13 19 19 O 1.43193 * 108.22017 * 180.54598 * 18 16 14 20 20 C 1.36208 * 116.69087 * 46.28651 * 19 18 16 21 21 C 1.38681 * 119.33064 * 162.87426 * 20 19 18 22 22 C 1.38171 * 120.13885 * 179.69374 * 21 20 19 23 23 C 1.38700 * 120.05520 * 359.96526 * 22 21 20 24 24 O 1.35973 * 120.00325 * 180.09999 * 23 22 21 25 25 C 1.38609 * 119.99504 * 0.10610 * 23 22 21 26 26 C 1.38691 * 120.02996 * 359.95857 * 25 23 22 27 27 O 1.36116 * 119.34715 * 179.87524 * 26 25 23 28 28 C 1.39477 * 120.32981 * 0.25595 * 12 11 10 29 29 C 1.36372 * 120.17162 * 359.97438 * 28 12 11 30 30 H 0.96997 * 120.00083 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.08455 * 0.02562 * 10 9 7 32 32 H 1.08003 * 119.91361 * 179.77347 * 11 10 9 33 33 H 0.97001 * 120.00283 * 145.28540 * 13 12 11 34 34 H 1.08999 * 109.71306 * 300.25240 * 18 16 14 35 35 H 1.09002 * 109.71034 * 60.88237 * 18 16 14 36 36 H 1.07998 * 119.92928 * 359.70512 * 21 20 19 37 37 H 1.08007 * 119.97475 * 179.97438 * 22 21 20 38 38 H 0.96702 * 113.99843 * 90.00313 * 24 23 22 39 39 H 1.08000 * 119.98440 * 179.97438 * 25 23 22 40 40 H 1.08001 * 119.91456 * 180.02562 * 28 12 11 41 41 H 1.08007 * 120.08397 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3464 0.0006 5 1 1.8840 2.3964 -1.2126 6 1 1.8840 2.3965 1.2124 7 6 2.0083 -1.2116 0.0005 8 1 3.0846 -1.2136 0.0889 9 6 1.3072 -2.4313 -0.1146 10 6 0.1465 -2.5085 -0.9091 11 6 -0.5283 -3.6891 -1.0113 12 6 -0.0661 -4.8211 -0.3400 13 7 -0.7578 -6.0241 -0.4532 14 6 -2.1016 -6.0217 -0.5566 15 8 -2.7162 -4.9815 -0.4497 16 6 -2.8406 -7.3113 -0.8051 17 1 -2.5660 -8.0443 -0.0464 18 6 -2.4877 -7.8499 -2.1981 19 8 -3.2151 -9.0657 -2.4055 20 6 -4.5368 -9.0517 -2.0765 21 6 -5.3704 -10.0438 -2.5704 22 6 -6.7125 -10.0493 -2.2422 23 6 -7.2298 -9.0621 -1.4166 24 8 -8.5503 -9.0696 -1.0926 25 6 -6.4004 -8.0677 -0.9219 26 6 -5.0533 -8.0599 -1.2514 27 8 -4.2520 -7.0754 -0.7599 28 6 1.0852 -4.7537 0.4444 29 6 1.7681 -3.5789 0.5600 30 1 -0.4850 0.8400 -0.0004 31 1 -0.2100 -1.6339 -1.4330 32 1 -1.4204 -3.7488 -1.6171 33 1 -0.2726 -6.8641 -0.4576 34 1 -2.7682 -7.1192 -2.9567 35 1 -1.4173 -8.0478 -2.2554 36 1 -4.9696 -10.8139 -3.2129 37 1 -7.3594 -10.8230 -2.6287 38 1 -8.7559 -9.5708 -0.2916 39 1 -6.8034 -7.2989 -0.2794 40 1 1.4374 -5.6344 0.9609 41 1 2.6597 -3.5285 1.1674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001440644932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:03 Heat of formation + Delta-G solvation = -114.228530 kcal Electronic energy + Delta-G solvation = -28078.208894 eV Core-core repulsion = 23888.217384 eV Total energy + Delta-G solvation = -4189.991511 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.65651 -41.22522 -39.86687 -39.10946 -38.35067 -36.94688 -36.28428 -34.85073 -32.65120 -31.51720 -31.45781 -30.69020 -29.24694 -27.08898 -26.11183 -24.04033 -23.61949 -23.14755 -22.28151 -21.24083 -20.15076 -19.36285 -19.23477 -19.04089 -18.39968 -17.92558 -17.19550 -17.08508 -16.67186 -16.36440 -16.03927 -15.80519 -15.68349 -15.56956 -15.41428 -15.00577 -14.85206 -14.60519 -14.41021 -14.09971 -13.93463 -13.70297 -13.43179 -13.31791 -12.88291 -12.71198 -12.51282 -12.35751 -12.09645 -11.98307 -11.81971 -11.70606 -11.59132 -11.24595 -10.93459 -10.60794 -9.76949 -9.50539 -9.10384 -8.83353 -8.56938 -6.34523 0.07442 0.14192 0.67510 1.09384 1.28423 1.35162 1.38371 1.53664 1.61558 1.91460 2.21719 2.38993 2.51778 2.77087 2.98470 3.29999 3.41725 3.47566 3.58641 3.67270 3.98853 4.07124 4.20829 4.30118 4.36109 4.39071 4.41382 4.69814 4.89599 4.91077 5.03915 5.05969 5.10187 5.26780 5.30237 5.34826 5.43061 5.63233 5.68936 5.80681 5.97964 6.08987 6.18625 6.30644 6.52232 6.65481 6.82620 6.92539 6.95946 7.18772 8.40034 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.025057 B = 0.002116 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.202325 B =13228.800128 C =13945.174574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.023 3.977 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.496 4.496 8 H 0.083 0.917 9 C 0.074 3.926 10 C -0.166 4.166 11 C -0.103 4.103 12 C 0.017 3.983 13 N -0.627 5.627 14 C 0.509 3.491 15 O -0.555 6.555 16 C 0.045 3.955 17 H 0.142 0.858 18 C 0.038 3.962 19 O -0.297 6.297 20 C 0.022 3.978 21 C -0.088 4.088 22 C -0.133 4.133 23 C 0.116 3.884 24 O -0.502 6.502 25 C -0.159 4.159 26 C 0.050 3.950 27 O -0.311 6.311 28 C -0.097 4.097 29 C -0.210 4.210 30 H 0.283 0.717 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.425 0.575 34 H 0.072 0.928 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.170 0.830 38 H 0.414 0.586 39 H 0.133 0.867 40 H 0.143 0.857 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.105 -23.229 -3.118 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.189 4.189 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.526 4.526 8 H 0.101 0.899 9 C 0.071 3.929 10 C -0.186 4.186 11 C -0.123 4.123 12 C -0.076 4.076 13 N -0.274 5.274 14 C 0.295 3.705 15 O -0.432 6.432 16 C -0.015 4.015 17 H 0.160 0.840 18 C -0.037 4.037 19 O -0.211 6.211 20 C -0.023 4.023 21 C -0.107 4.107 22 C -0.151 4.151 23 C 0.071 3.929 24 O -0.316 6.316 25 C -0.179 4.179 26 C 0.005 3.995 27 O -0.225 6.225 28 C -0.117 4.117 29 C -0.230 4.230 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.264 0.736 34 H 0.091 0.909 35 H 0.186 0.814 36 H 0.185 0.815 37 H 0.187 0.813 38 H 0.274 0.726 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.766 -22.008 -3.542 23.953 hybrid contribution 0.282 1.029 0.650 1.249 sum -8.484 -20.979 -2.892 22.814 Atomic orbital electron populations 1.69922 1.09053 1.30052 1.38325 1.26843 0.95597 1.04804 0.91609 0.85060 0.79428 0.76032 0.78549 1.17491 1.19393 1.19505 1.19818 0.95298 0.91092 1.46403 0.89909 1.18055 0.92065 0.93629 0.89123 1.20883 0.99479 0.95973 1.02299 1.20442 0.98495 0.93579 0.99791 1.17177 0.97521 0.86434 1.06437 1.42596 1.04731 1.08658 1.71439 1.20253 0.82867 0.89749 0.77657 1.90796 1.68003 1.34954 1.49415 1.22979 0.80565 0.95922 1.01988 0.84029 1.23709 1.00318 0.86322 0.93385 1.86361 1.18039 1.34746 1.81956 1.19195 0.85316 0.98666 0.99082 1.20642 0.91685 0.98267 1.00080 1.21497 0.94633 0.99424 0.99553 1.18046 0.83451 0.93861 0.97554 1.84808 1.19236 1.77242 1.50282 1.20802 0.90506 1.02290 1.04269 1.18996 0.91751 0.91110 0.97646 1.86373 1.16490 1.40688 1.78976 1.20464 0.95194 0.98357 0.97696 1.20973 1.03549 0.93699 1.04788 0.90664 0.88955 0.89279 0.73582 0.90924 0.81429 0.81502 0.81297 0.72646 0.84930 0.83978 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.31 10.98 21.82 0.24 -47.07 16 2 C 0.02 1.22 5.31 85.24 0.45 1.67 16 3 Si 0.99 39.53 29.56 68.60 2.03 41.56 16 4 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.50 -26.75 9.02 23.39 0.21 -26.54 16 8 H 0.08 4.21 7.85 -2.91 -0.02 4.18 16 9 C 0.07 3.97 5.50 -21.28 -0.12 3.86 16 10 C -0.17 -9.19 8.57 22.48 0.19 -9.00 16 11 C -0.10 -5.13 8.57 22.13 0.19 -4.94 16 12 C 0.02 0.71 6.26 38.57 0.24 0.95 16 13 N -0.63 -18.66 5.29 -303.11 -1.60 -20.26 16 14 C 0.51 17.08 6.90 87.66 0.60 17.68 16 15 O -0.55 -25.89 14.28 15.79 0.23 -25.67 16 16 C 0.05 1.12 3.44 30.00 0.10 1.22 16 17 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 18 C 0.04 0.74 6.53 72.14 0.47 1.22 16 19 O -0.30 -5.98 10.42 -83.70 -0.87 -6.85 16 20 C 0.02 0.48 6.49 22.55 0.15 0.63 16 21 C -0.09 -1.39 9.96 22.36 0.22 -1.17 16 22 C -0.13 -1.88 9.98 22.36 0.22 -1.66 16 23 C 0.12 2.11 6.70 22.47 0.15 2.26 16 24 O -0.50 -7.51 13.50 -93.25 -1.26 -8.77 16 25 C -0.16 -3.78 9.90 22.47 0.22 -3.56 16 26 C 0.05 1.31 6.49 22.55 0.15 1.46 16 27 O -0.31 -9.76 9.62 -69.09 -0.66 -10.43 16 28 C -0.10 -3.80 9.90 22.13 0.22 -3.58 16 29 C -0.21 -9.66 9.74 22.48 0.22 -9.44 16 30 H 0.28 14.53 8.30 -92.71 -0.77 13.76 16 31 H 0.09 5.50 6.48 -2.91 -0.02 5.48 16 32 H 0.09 4.56 6.51 -2.91 -0.02 4.54 16 33 H 0.43 7.87 8.82 -92.71 -0.82 7.05 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.17 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 37 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 38 H 0.41 1.85 9.06 -74.06 -0.67 1.18 16 39 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 40 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 41 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -79.03 355.96 1.62 -77.41 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.37 Total: 29.01 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 3.90 Total: -28.93 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -1.36 Total: -67.33 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -2.57 Total: -51.72 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -79.03 1.62 -77.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001440644932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.818 kcal (2) G-P(sol) polarization free energy of solvation -79.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds