Wall clock time and date at job start Sat Apr 11 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48500 * 109.47079 * 269.99848 * 3 2 1 5 5 H 1.48498 * 109.47298 * 29.99831 * 3 2 1 6 6 H 1.48499 * 109.47178 * 150.00024 * 3 2 1 7 7 C 1.39899 * 120.00448 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00679 * 175.55055 * 7 2 1 9 9 C 1.41155 * 120.00193 * 355.56041 * 7 2 1 10 10 C 1.40867 * 120.16870 * 214.78651 * 9 7 2 11 11 C 1.36367 * 119.83406 * 179.97438 * 10 9 7 12 12 C 1.39486 * 120.16705 * 0.02562 * 11 10 9 13 13 N 1.39242 * 119.83124 * 179.97438 * 12 11 10 14 14 C 1.34769 * 120.00097 * 35.28729 * 13 12 11 15 15 O 1.21287 * 120.00523 * 355.70657 * 14 13 12 16 16 C 1.50706 * 119.99855 * 175.70838 * 14 13 12 17 17 H 1.09000 * 109.70337 * 304.41823 * 16 14 13 18 18 C 1.53469 * 109.70417 * 64.99930 * 16 14 13 19 19 O 1.43178 * 108.22421 * 179.42766 * 18 16 14 20 20 C 1.36206 * 116.69784 * 313.71192 * 19 18 16 21 21 C 1.38684 * 119.33653 * 197.33181 * 20 19 18 22 22 C 1.38168 * 120.14017 * 180.16453 * 21 20 19 23 23 C 1.38694 * 120.05293 * 0.02562 * 22 21 20 24 24 O 1.35985 * 119.99701 * 180.22197 * 23 22 21 25 25 C 1.38611 * 120.00010 * 359.94673 * 23 22 21 26 26 C 1.38688 * 120.02847 * 359.97438 * 25 23 22 27 27 O 1.36105 * 119.34948 * 180.37846 * 26 25 23 28 28 C 1.39478 * 120.33442 * 0.25551 * 12 11 10 29 29 C 1.36386 * 120.16511 * 359.44176 * 28 12 11 30 30 H 0.96997 * 119.99999 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.08108 * 359.94542 * 10 9 7 32 32 H 1.08000 * 119.91814 * 180.02562 * 11 10 9 33 33 H 0.97005 * 119.99532 * 215.28298 * 13 12 11 34 34 H 1.08996 * 109.71247 * 59.75018 * 18 16 14 35 35 H 1.08997 * 109.74858 * 299.13430 * 18 16 14 36 36 H 1.07999 * 119.92565 * 0.15067 * 21 20 19 37 37 H 1.08002 * 119.97338 * 180.02562 * 22 21 20 38 38 H 0.96703 * 113.99573 * 269.72035 * 24 23 22 39 39 H 1.08001 * 119.98315 * 180.02562 * 25 23 22 40 40 H 1.07994 * 119.91803 * 179.72851 * 28 12 11 41 41 H 1.07997 * 120.08194 * 180.25294 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4401 2.6527 0.7000 6 1 3.5402 1.4403 0.7000 7 6 2.0083 -1.2115 0.0005 8 1 3.0859 -1.2130 -0.0720 9 6 1.3058 -2.4321 0.0957 10 6 1.8651 -3.5179 0.7977 11 6 1.1803 -4.6938 0.8858 12 6 -0.0707 -4.8234 0.2825 13 7 -0.7637 -6.0275 0.3764 14 6 -0.6814 -6.7664 1.5005 15 8 0.0564 -6.4227 2.3997 16 6 -1.5064 -8.0198 1.6403 17 1 -2.5601 -7.7850 1.4897 18 6 -1.0536 -9.0557 0.6024 19 8 -1.8468 -10.2356 0.7718 20 6 -2.0104 -10.6851 2.0471 21 6 -2.4427 -11.9857 2.2588 22 6 -2.6176 -12.4578 3.5455 23 6 -2.3615 -11.6313 4.6295 24 8 -2.5296 -12.0986 5.8954 25 6 -1.9287 -10.3309 4.4224 26 6 -1.7511 -9.8557 3.1316 27 8 -1.3182 -8.5790 2.9444 28 6 -0.6285 -3.7547 -0.4192 29 6 0.0418 -2.5705 -0.5106 30 1 -0.4850 0.8400 -0.0004 31 1 2.8340 -3.4193 1.2645 32 1 1.6076 -5.5270 1.4240 33 1 -1.3056 -6.3344 -0.3673 34 1 -0.0014 -9.2949 0.7565 35 1 -1.1967 -8.6575 -0.4021 36 1 -2.6433 -12.6307 1.4162 37 1 -2.9539 -13.4713 3.7074 38 1 -3.4169 -11.9560 6.2526 39 1 -1.7290 -9.6877 5.2667 40 1 -1.5955 -3.8638 -0.8873 41 1 -0.3931 -1.7426 -1.0508 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001440644933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:08 Heat of formation + Delta-G solvation = -89.700679 kcal Electronic energy + Delta-G solvation = -27985.929490 eV Core-core repulsion = 23797.001586 eV Total energy + Delta-G solvation = -4188.927903 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.72747 -39.88559 -38.99970 -37.66741 -37.16350 -36.18790 -34.61235 -33.15214 -31.58212 -30.64994 -29.66757 -29.04865 -28.25539 -25.74688 -24.75923 -23.24887 -22.27172 -21.48935 -20.86797 -19.87443 -19.23740 -18.49352 -17.91545 -17.52830 -17.32489 -16.57788 -16.07202 -15.70979 -15.51105 -15.27907 -15.09551 -14.71096 -14.56849 -14.23283 -14.17654 -13.92818 -13.69269 -13.19602 -13.06507 -12.72506 -12.61341 -12.22399 -11.79713 -11.63366 -11.46588 -11.32913 -11.23604 -11.18106 -11.04938 -10.85567 -10.75918 -10.10759 -9.59195 -9.57038 -9.24926 -9.01426 -8.96235 -8.29208 -7.64222 -6.98753 -6.69300 -4.42299 0.83927 0.92899 2.30363 2.35994 2.74931 2.86715 3.01076 3.06162 3.09522 3.20020 3.23560 3.54242 3.88861 3.92911 3.97531 4.27303 4.46426 4.60606 4.63151 4.74563 4.80932 4.96009 5.05807 5.13595 5.45357 5.56526 5.61612 5.81524 6.01730 6.09204 6.11039 6.33184 6.52250 6.59376 6.78878 6.97309 7.03288 7.08810 7.20389 7.31565 7.54492 7.59747 7.73666 7.97203 8.09108 8.22585 8.44856 8.57812 8.85001 8.90073 10.21606 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.031251 B = 0.001991 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.765156 B =14058.755623 C =14509.735405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.458 4.458 8 H 0.077 0.923 9 C 0.102 3.898 10 C -0.206 4.206 11 C -0.083 4.083 12 C -0.004 4.004 13 N -0.641 5.641 14 C 0.507 3.493 15 O -0.498 6.498 16 C 0.037 3.963 17 H 0.111 0.889 18 C 0.033 3.967 19 O -0.300 6.300 20 C 0.038 3.962 21 C -0.095 4.095 22 C -0.143 4.143 23 C 0.110 3.890 24 O -0.494 6.494 25 C -0.139 4.139 26 C 0.075 3.925 27 O -0.274 6.274 28 C -0.116 4.116 29 C -0.142 4.142 30 H 0.279 0.721 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.397 0.603 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.391 0.609 39 H 0.143 0.857 40 H 0.093 0.907 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.023 -19.659 1.607 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.226 4.226 11 C -0.103 4.103 12 C -0.096 4.096 13 N -0.286 5.286 14 C 0.290 3.710 15 O -0.372 6.372 16 C -0.024 4.024 17 H 0.128 0.872 18 C -0.043 4.043 19 O -0.215 6.215 20 C -0.007 4.007 21 C -0.114 4.114 22 C -0.162 4.162 23 C 0.065 3.935 24 O -0.304 6.304 25 C -0.158 4.158 26 C 0.029 3.971 27 O -0.188 6.188 28 C -0.136 4.136 29 C -0.162 4.162 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.231 0.769 34 H 0.105 0.895 35 H 0.148 0.852 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.247 0.753 39 H 0.161 0.839 40 H 0.111 0.889 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.084 -19.357 2.198 21.092 hybrid contribution -0.517 0.944 -0.226 1.100 sum -8.601 -18.413 1.972 20.418 Atomic orbital electron populations 1.69750 1.07322 1.28871 1.37673 1.25903 0.94975 1.01290 0.92481 0.86170 0.80263 0.80333 0.79091 1.19469 1.20249 1.18665 1.19526 0.94828 0.90189 1.44325 0.90482 1.17756 0.92258 0.92012 0.88020 1.20811 1.01330 0.94879 1.05540 1.20391 0.92702 0.97910 0.99254 1.17195 0.94296 0.85471 1.12605 1.42792 1.48987 1.21478 1.15319 1.19531 0.83846 0.84267 0.83332 1.90763 1.37369 1.69573 1.39467 1.23006 1.01799 0.93816 0.83784 0.87152 1.23626 0.96141 0.83931 1.00604 1.86349 1.68661 1.43185 1.23283 1.18948 1.04543 0.93926 0.83324 1.20268 1.01503 0.92038 0.97564 1.21150 1.03304 1.00756 0.90966 1.17962 1.00385 0.90673 0.84440 1.84871 1.37050 1.81782 1.26654 1.20669 1.03932 0.96074 0.95099 1.18768 1.00618 0.84350 0.93376 1.86436 1.77537 1.24528 1.30255 1.20300 0.98332 0.92985 1.01962 1.21207 0.97311 0.95538 1.02170 0.91025 0.88437 0.87504 0.76933 0.89459 0.85168 0.84157 0.84405 0.75300 0.83885 0.88923 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.60 10.60 55.55 0.59 -20.01 16 2 C 0.07 1.71 5.42 -17.34 -0.09 1.62 16 3 Si 0.92 18.67 29.56 -169.99 -5.03 13.64 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -11.96 9.02 -37.85 -0.34 -12.30 16 8 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 9 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 10 C -0.21 -5.09 9.74 -39.26 -0.38 -5.47 16 11 C -0.08 -1.92 8.61 -39.79 -0.34 -2.26 16 12 C 0.00 -0.08 6.31 -83.57 -0.53 -0.61 16 13 N -0.64 -10.26 5.27 -9.74 -0.05 -10.32 16 14 C 0.51 8.50 7.03 -10.99 -0.08 8.43 16 15 O -0.50 -10.82 13.94 -14.17 -0.20 -11.02 16 16 C 0.04 0.47 3.44 -27.64 -0.10 0.38 16 17 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 18 C 0.03 0.34 6.52 37.40 0.24 0.58 16 19 O -0.30 -3.35 10.42 -33.19 -0.35 -3.69 16 20 C 0.04 0.43 6.49 -39.14 -0.25 0.18 16 21 C -0.10 -0.88 9.96 -39.44 -0.39 -1.27 16 22 C -0.14 -1.22 9.98 -39.44 -0.39 -1.61 16 23 C 0.11 1.07 6.70 -39.28 -0.26 0.81 16 24 O -0.49 -4.09 13.50 -19.69 -0.27 -4.35 16 25 C -0.14 -1.61 9.90 -39.28 -0.39 -2.00 16 26 C 0.07 0.97 6.49 -39.14 -0.25 0.72 16 27 O -0.27 -4.17 9.61 -47.05 -0.45 -4.62 16 28 C -0.12 -2.51 9.90 -39.79 -0.39 -2.90 16 29 C -0.14 -3.54 8.61 -39.25 -0.34 -3.87 16 30 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 31 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 32 H 0.11 2.46 6.22 -52.49 -0.33 2.14 16 33 H 0.40 4.58 8.54 -40.82 -0.35 4.23 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.13 0.93 7.86 -51.93 -0.41 0.52 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.39 1.27 9.06 45.56 0.41 1.68 16 39 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.13 3.41 6.13 -52.49 -0.32 3.09 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -32.83 354.43 -8.79 -41.63 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -3.50 Total: 10.93 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -4.89 Total: -17.53 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: 0.54 Total: -30.33 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -1.26 Total: -23.68 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.83 -8.79 -41.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001440644933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.074 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds