Wall clock time and date at job start Sat Apr 11 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48500 * 109.47079 * 269.99848 * 3 2 1 5 5 H 1.48498 * 109.47298 * 29.99831 * 3 2 1 6 6 H 1.48499 * 109.47178 * 150.00024 * 3 2 1 7 7 C 1.39899 * 120.00448 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00679 * 175.55055 * 7 2 1 9 9 C 1.41155 * 120.00193 * 355.56041 * 7 2 1 10 10 C 1.40867 * 120.16870 * 214.78651 * 9 7 2 11 11 C 1.36367 * 119.83406 * 179.97438 * 10 9 7 12 12 C 1.39486 * 120.16705 * 0.02562 * 11 10 9 13 13 N 1.39242 * 119.83124 * 179.97438 * 12 11 10 14 14 C 1.34769 * 120.00097 * 35.28729 * 13 12 11 15 15 O 1.21287 * 120.00523 * 355.70657 * 14 13 12 16 16 C 1.50706 * 119.99855 * 175.70838 * 14 13 12 17 17 H 1.09000 * 109.70337 * 304.41823 * 16 14 13 18 18 C 1.53469 * 109.70417 * 64.99930 * 16 14 13 19 19 O 1.43178 * 108.22421 * 179.42766 * 18 16 14 20 20 C 1.36206 * 116.69784 * 313.71192 * 19 18 16 21 21 C 1.38684 * 119.33653 * 197.33181 * 20 19 18 22 22 C 1.38168 * 120.14017 * 180.16453 * 21 20 19 23 23 C 1.38694 * 120.05293 * 0.02562 * 22 21 20 24 24 O 1.35985 * 119.99701 * 180.22197 * 23 22 21 25 25 C 1.38611 * 120.00010 * 359.94673 * 23 22 21 26 26 C 1.38688 * 120.02847 * 359.97438 * 25 23 22 27 27 O 1.36105 * 119.34948 * 180.37846 * 26 25 23 28 28 C 1.39478 * 120.33442 * 0.25551 * 12 11 10 29 29 C 1.36386 * 120.16511 * 359.44176 * 28 12 11 30 30 H 0.96997 * 119.99999 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.08108 * 359.94542 * 10 9 7 32 32 H 1.08000 * 119.91814 * 180.02562 * 11 10 9 33 33 H 0.97005 * 119.99532 * 215.28298 * 13 12 11 34 34 H 1.08996 * 109.71247 * 59.75018 * 18 16 14 35 35 H 1.08997 * 109.74858 * 299.13430 * 18 16 14 36 36 H 1.07999 * 119.92565 * 0.15067 * 21 20 19 37 37 H 1.08002 * 119.97338 * 180.02562 * 22 21 20 38 38 H 0.96703 * 113.99573 * 269.72035 * 24 23 22 39 39 H 1.08001 * 119.98315 * 180.02562 * 25 23 22 40 40 H 1.07994 * 119.91803 * 179.72851 * 28 12 11 41 41 H 1.07997 * 120.08194 * 180.25294 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4401 2.6527 0.7000 6 1 3.5402 1.4403 0.7000 7 6 2.0083 -1.2115 0.0005 8 1 3.0859 -1.2130 -0.0720 9 6 1.3058 -2.4321 0.0957 10 6 1.8651 -3.5179 0.7977 11 6 1.1803 -4.6938 0.8858 12 6 -0.0707 -4.8234 0.2825 13 7 -0.7637 -6.0275 0.3764 14 6 -0.6814 -6.7664 1.5005 15 8 0.0564 -6.4227 2.3997 16 6 -1.5064 -8.0198 1.6403 17 1 -2.5601 -7.7850 1.4897 18 6 -1.0536 -9.0557 0.6024 19 8 -1.8468 -10.2356 0.7718 20 6 -2.0104 -10.6851 2.0471 21 6 -2.4427 -11.9857 2.2588 22 6 -2.6176 -12.4578 3.5455 23 6 -2.3615 -11.6313 4.6295 24 8 -2.5296 -12.0986 5.8954 25 6 -1.9287 -10.3309 4.4224 26 6 -1.7511 -9.8557 3.1316 27 8 -1.3182 -8.5790 2.9444 28 6 -0.6285 -3.7547 -0.4192 29 6 0.0418 -2.5705 -0.5106 30 1 -0.4850 0.8400 -0.0004 31 1 2.8340 -3.4193 1.2645 32 1 1.6076 -5.5270 1.4240 33 1 -1.3056 -6.3344 -0.3673 34 1 -0.0014 -9.2949 0.7565 35 1 -1.1967 -8.6575 -0.4021 36 1 -2.6433 -12.6307 1.4162 37 1 -2.9539 -13.4713 3.7074 38 1 -3.4169 -11.9560 6.2526 39 1 -1.7290 -9.6877 5.2667 40 1 -1.5955 -3.8638 -0.8873 41 1 -0.3931 -1.7426 -1.0508 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001440644933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:07 Heat of formation + Delta-G solvation = -111.990025 kcal Electronic energy + Delta-G solvation = -27986.896028 eV Core-core repulsion = 23797.001586 eV Total energy + Delta-G solvation = -4189.894442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.65702 -41.23540 -39.86342 -39.10406 -38.35062 -36.94450 -36.27563 -34.87160 -32.64560 -31.56366 -31.42124 -30.63755 -29.24206 -27.08078 -26.11968 -24.03908 -23.70824 -22.97974 -22.29707 -21.29491 -20.14221 -19.39329 -19.28446 -18.96568 -18.39288 -17.90790 -17.22450 -17.00924 -16.71846 -16.41064 -16.05836 -15.78137 -15.71837 -15.52181 -15.39281 -15.00309 -14.84075 -14.60302 -14.44037 -14.04513 -14.01703 -13.62873 -13.32708 -13.27015 -12.91298 -12.81687 -12.57813 -12.43685 -12.09035 -11.97666 -11.82823 -11.60619 -11.42607 -11.26603 -10.89680 -10.69851 -9.76540 -9.50320 -9.10036 -8.80739 -8.53559 -6.36438 0.07886 0.14588 0.68385 1.10289 1.25310 1.38294 1.39130 1.51776 1.63282 1.91700 2.22647 2.38291 2.51993 2.76632 2.98205 3.30229 3.40698 3.47337 3.59232 3.66274 3.99111 4.07538 4.21400 4.30488 4.35912 4.37320 4.47571 4.70274 4.88637 4.91438 5.04345 5.06449 5.10547 5.26891 5.30603 5.37221 5.43563 5.65865 5.69234 5.84537 5.96141 6.09304 6.19585 6.35383 6.52045 6.64941 6.82586 6.93825 6.94392 7.16654 8.39069 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.031251 B = 0.001991 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.765156 B =14058.755623 C =14509.735405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.028 3.972 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.496 4.496 8 H 0.072 0.928 9 C 0.070 3.930 10 C -0.223 4.223 11 C -0.095 4.095 12 C 0.016 3.984 13 N -0.627 5.627 14 C 0.511 3.489 15 O -0.552 6.552 16 C 0.045 3.955 17 H 0.138 0.862 18 C 0.037 3.963 19 O -0.298 6.298 20 C 0.023 3.977 21 C -0.089 4.089 22 C -0.133 4.133 23 C 0.116 3.884 24 O -0.502 6.502 25 C -0.159 4.159 26 C 0.050 3.950 27 O -0.309 6.309 28 C -0.110 4.110 29 C -0.160 4.160 30 H 0.286 0.714 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.424 0.576 34 H 0.077 0.923 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.414 0.586 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.945 -21.830 0.735 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.526 4.526 8 H 0.091 0.909 9 C 0.067 3.933 10 C -0.243 4.243 11 C -0.115 4.115 12 C -0.077 4.077 13 N -0.274 5.274 14 C 0.297 3.703 15 O -0.429 6.429 16 C -0.015 4.015 17 H 0.155 0.845 18 C -0.038 4.038 19 O -0.212 6.212 20 C -0.022 4.022 21 C -0.107 4.107 22 C -0.151 4.151 23 C 0.071 3.929 24 O -0.316 6.316 25 C -0.178 4.178 26 C 0.005 3.995 27 O -0.224 6.224 28 C -0.130 4.130 29 C -0.180 4.180 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.262 0.738 34 H 0.096 0.904 35 H 0.185 0.815 36 H 0.185 0.815 37 H 0.187 0.813 38 H 0.273 0.727 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.061 -21.578 1.301 23.844 hybrid contribution -0.015 1.365 0.162 1.375 sum -10.075 -20.213 1.463 22.632 Atomic orbital electron populations 1.69806 1.08508 1.30066 1.38191 1.26732 0.95846 1.04294 0.91578 0.85108 0.78648 0.75833 0.79526 1.18287 1.19417 1.18819 1.19736 0.94886 0.91340 1.46646 0.90933 1.18065 0.93444 0.92596 0.89173 1.20919 1.01687 0.95556 1.06120 1.20500 0.93855 0.97371 0.99779 1.17210 0.93406 0.87049 1.10046 1.42597 1.48555 1.19766 1.16447 1.20208 0.82907 0.84940 0.82280 1.90747 1.39710 1.71131 1.41353 1.22975 1.02065 0.92318 0.84180 0.84456 1.23742 0.95556 0.83145 1.01388 1.86355 1.68741 1.43112 1.22999 1.19191 1.05310 0.94686 0.83041 1.20641 1.00018 0.91294 0.98765 1.21491 1.01758 1.01728 0.90141 1.18048 0.99506 0.89956 0.85435 1.84814 1.39147 1.81456 1.26141 1.20800 1.05192 0.97175 0.94650 1.18987 1.02285 0.83812 0.94403 1.86360 1.78532 1.26034 1.31444 1.20570 0.99384 0.91749 1.01314 1.21206 0.97403 0.96596 1.02816 0.90372 0.88742 0.87687 0.73764 0.90431 0.81489 0.81545 0.81346 0.72667 0.84864 0.85075 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.56 10.60 21.82 0.23 -43.33 16 2 C 0.03 1.41 5.42 85.24 0.46 1.87 16 3 Si 0.99 38.81 29.56 68.60 2.03 40.84 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 7 C -0.50 -26.98 9.02 23.39 0.21 -26.77 16 8 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 9 C 0.07 3.79 5.55 -21.28 -0.12 3.67 16 10 C -0.22 -11.53 9.74 22.48 0.22 -11.31 16 11 C -0.10 -4.51 8.61 22.13 0.19 -4.32 16 12 C 0.02 0.66 6.31 38.56 0.24 0.90 16 13 N -0.63 -18.77 5.27 -303.10 -1.60 -20.37 16 14 C 0.51 16.68 7.03 87.66 0.62 17.29 16 15 O -0.55 -24.45 13.94 15.80 0.22 -24.23 16 16 C 0.04 1.08 3.44 30.01 0.10 1.18 16 17 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 18 C 0.04 0.68 6.52 72.14 0.47 1.15 16 19 O -0.30 -5.82 10.42 -83.66 -0.87 -6.69 16 20 C 0.02 0.48 6.49 22.55 0.15 0.62 16 21 C -0.09 -1.36 9.96 22.36 0.22 -1.14 16 22 C -0.13 -1.83 9.98 22.36 0.22 -1.61 16 23 C 0.12 2.04 6.70 22.47 0.15 2.19 16 24 O -0.50 -7.28 13.50 -93.38 -1.26 -8.54 16 25 C -0.16 -3.67 9.90 22.47 0.22 -3.44 16 26 C 0.05 1.28 6.49 22.55 0.15 1.42 16 27 O -0.31 -9.44 9.61 -68.96 -0.66 -10.10 16 28 C -0.11 -4.67 9.90 22.14 0.22 -4.45 16 29 C -0.16 -8.11 8.61 22.48 0.19 -7.91 16 30 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 31 H 0.09 4.75 8.06 -2.91 -0.02 4.73 16 32 H 0.11 5.00 6.22 -2.91 -0.02 4.98 16 33 H 0.42 8.22 8.54 -92.70 -0.79 7.43 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.17 1.71 7.86 -2.39 -0.02 1.69 16 36 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.41 1.73 9.06 -74.05 -0.67 1.06 16 39 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 40 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 41 H 0.12 6.37 6.13 -2.91 -0.02 6.35 16 Total: -1.00 -75.34 354.43 1.66 -73.68 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: -0.34 Total: 29.38 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 3.92 Total: -30.63 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -1.37 Total: -63.70 kcal Atomic # 8 Polarization: -46.99 SS G_CDS: -2.58 Total: -49.56 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -75.34 1.66 -73.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001440644933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.310 kcal (2) G-P(sol) polarization free energy of solvation -75.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds