Wall clock time and date at job start Sat Apr 11 2020 06:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 120.00022 * 2 1 4 4 H 1.48491 * 109.47399 * 240.00210 * 3 2 1 5 5 H 1.48501 * 109.47198 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46886 * 120.00123 * 3 2 1 7 7 C 1.37879 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99797 * 359.97438 * 7 2 1 10 10 N 1.46909 * 109.47049 * 185.00808 * 9 7 2 11 11 C 1.46900 * 110.99726 * 295.00723 * 10 9 7 12 12 C 1.53240 * 109.33739 * 187.24933 * 11 10 9 13 13 N 1.47077 * 108.52155 * 306.17315 * 12 11 10 14 14 C 1.34773 * 120.87938 * 230.90639 * 13 12 11 15 15 O 1.21611 * 120.00444 * 355.70231 * 14 13 12 16 16 C 1.47388 * 119.99866 * 175.69569 * 14 13 12 17 17 C 1.39818 * 120.18211 * 54.87701 * 16 14 13 18 18 C 1.37668 * 119.97239 * 180.02562 * 17 16 14 19 19 C 1.38763 * 120.35651 * 359.97438 * 18 17 16 20 20 Cl 1.73594 * 119.81405 * 180.02562 * 19 18 17 21 21 C 1.38244 * 120.37351 * 0.02562 * 19 18 17 22 22 F 1.35101 * 119.99122 * 180.02562 * 21 19 18 23 23 C 1.39086 * 120.01406 * 359.76343 * 21 19 18 24 24 N 1.39023 * 120.17387 * 180.25901 * 23 21 19 25 25 C 1.47086 * 118.23792 * 51.18482 * 13 12 11 26 26 C 1.46894 * 110.99662 * 59.31155 * 10 9 7 27 27 H 0.96996 * 119.99726 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47624 * 65.01030 * 9 7 2 29 29 H 1.08999 * 109.47776 * 305.01018 * 9 7 2 30 30 H 1.09009 * 109.49259 * 67.29342 * 11 10 9 31 31 H 1.08994 * 109.51690 * 307.22690 * 11 10 9 32 32 H 1.08998 * 109.62575 * 186.46085 * 12 11 10 33 33 H 1.08997 * 109.62514 * 65.88275 * 12 11 10 34 34 H 1.08002 * 120.01162 * 0.02562 * 17 16 14 35 35 H 1.08002 * 119.82018 * 180.02562 * 18 17 16 36 36 H 0.96996 * 120.00531 * 185.27302 * 24 23 21 37 37 H 0.97011 * 120.00130 * 5.27327 * 24 23 21 38 38 H 1.08998 * 109.62502 * 68.52159 * 25 13 12 39 39 H 1.08994 * 109.62827 * 189.10098 * 25 13 12 40 40 H 1.09009 * 109.49167 * 292.70448 * 26 10 9 41 41 H 1.09001 * 109.49773 * 52.78279 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2011 -3.6131 0.1198 11 6 3.0751 -3.6892 -1.0585 12 6 3.9233 -4.9630 -0.9798 13 7 4.6215 -4.9800 0.3146 14 6 5.9517 -5.1865 0.3803 15 8 6.5786 -5.4394 -0.6306 16 6 6.6468 -5.1056 1.6775 17 6 6.2182 -5.8873 2.7546 18 6 6.8702 -5.8080 3.9644 19 6 7.9536 -4.9554 4.1226 20 17 8.7659 -4.8670 5.6542 21 6 8.3896 -4.1760 3.0674 22 9 9.4454 -3.3489 3.2298 23 6 7.7449 -4.2471 1.8370 24 7 8.1840 -3.4688 0.7720 25 6 3.8286 -4.7720 1.5358 26 6 2.9841 -3.5058 1.3580 27 1 -0.4849 0.8400 0.0004 28 1 0.6930 -2.5965 -0.9318 29 1 0.5591 -2.5192 0.8414 30 1 3.7292 -2.8175 -1.0831 31 1 2.4664 -3.7128 -1.9624 32 1 4.6530 -4.9676 -1.7895 33 1 3.2782 -5.8379 -1.0594 34 1 5.3759 -6.5531 2.6375 35 1 6.5373 -6.4132 4.7947 36 1 7.6874 -3.4623 -0.0612 37 1 8.9871 -2.9321 0.8622 38 1 3.1744 -5.6286 1.6979 39 1 4.4956 -4.6505 2.3892 40 1 3.6395 -2.6367 1.2998 41 1 2.3091 -3.3965 2.2069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471237076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:15 Heat of formation + Delta-G solvation = -46.243574 kcal Electronic energy + Delta-G solvation = -27785.706921 eV Core-core repulsion = 23640.896150 eV Total energy + Delta-G solvation = -4144.810771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.105 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.11177 -40.71546 -38.83080 -37.56113 -36.86518 -35.05301 -34.39298 -32.45716 -31.49777 -30.28732 -29.20206 -28.13711 -25.60920 -24.20066 -23.39977 -22.61318 -22.27778 -20.71435 -19.18759 -18.18127 -17.67259 -17.59884 -16.64779 -16.32078 -15.99103 -15.80561 -15.40283 -15.24102 -14.96338 -14.83784 -14.50000 -14.09348 -13.82406 -13.68043 -13.36079 -13.31490 -12.82067 -12.51238 -12.41251 -12.30077 -12.18960 -11.89550 -11.31459 -11.23275 -11.18333 -11.09880 -10.83749 -10.71596 -10.68918 -10.34378 -10.01899 -9.88778 -9.72019 -8.98161 -8.57420 -8.52368 -7.96819 -7.35267 -6.12637 -4.22353 0.44875 0.98617 1.66060 2.48844 2.91021 3.21601 3.27272 3.27487 3.29408 3.41989 3.85142 4.32252 4.33969 4.44830 4.66119 4.82064 4.97264 5.17657 5.24352 5.28131 5.39846 5.45062 5.54840 5.65310 5.72193 5.76646 5.86387 5.90138 6.00002 6.17855 6.33572 6.52145 6.59289 6.62092 6.96688 7.12143 7.30695 7.40559 7.44008 7.78524 7.87678 8.08713 8.10535 8.16665 8.86915 9.45275 10.92583 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.012030 B = 0.003347 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.872031 B = 8363.029419 C = 9195.050403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.553 4.553 8 H 0.054 0.946 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.049 3.951 12 C 0.115 3.885 13 N -0.593 5.593 14 C 0.565 3.435 15 O -0.545 6.545 16 C -0.182 4.182 17 C -0.033 4.033 18 C -0.152 4.152 19 C -0.005 4.005 20 Cl -0.048 7.048 21 C 0.018 3.982 22 F -0.129 7.129 23 C 0.253 3.747 24 N -0.848 5.848 25 C 0.100 3.900 26 C 0.051 3.949 27 H 0.264 0.736 28 H 0.029 0.971 29 H 0.037 0.963 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.414 0.586 37 H 0.406 0.594 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.886 -12.075 7.393 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.592 4.592 8 H 0.072 0.928 9 C 0.063 3.937 10 N -0.264 5.264 11 C -0.080 4.080 12 C -0.007 4.007 13 N -0.325 5.325 14 C 0.353 3.647 15 O -0.424 6.424 16 C -0.191 4.191 17 C -0.053 4.053 18 C -0.173 4.173 19 C -0.034 4.034 20 Cl -0.019 7.019 21 C -0.007 4.007 22 F -0.107 7.107 23 C 0.141 3.859 24 N -0.386 5.386 25 C -0.022 4.022 26 C -0.079 4.079 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.246 0.754 37 H 0.235 0.765 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.854 -12.466 6.988 19.904 hybrid contribution 1.211 2.308 -0.065 2.607 sum 15.065 -10.158 6.923 19.444 Atomic orbital electron populations 1.69922 1.05988 1.27090 1.49696 1.24939 0.94750 0.99111 0.94742 0.86728 0.79747 0.83352 0.78637 1.20283 1.21066 1.20268 1.21667 0.93150 0.92121 1.52309 0.92753 1.19762 0.90664 0.85247 0.98029 1.62506 1.16867 1.46661 1.00378 1.22263 0.95307 0.95114 0.95362 1.21904 0.95177 0.99271 0.84354 1.48147 1.06331 1.68965 1.09050 1.17925 0.81859 0.77100 0.87841 1.90789 1.66007 1.49336 1.36271 1.19269 0.99712 1.03810 0.96284 1.21075 0.97825 0.96125 0.90251 1.20609 0.96160 1.01491 0.99022 1.20863 0.96657 0.98893 0.86969 1.98393 1.78347 1.97441 1.27674 1.16514 0.92231 0.99078 0.92880 1.91490 1.53631 1.69827 1.95784 1.17301 0.91454 0.90372 0.86739 1.42392 1.32059 1.49529 1.14582 1.22267 0.94118 0.99670 0.86183 1.22219 0.96174 0.94682 0.94809 0.92629 0.95269 0.94515 0.94084 0.90196 0.89415 0.90946 0.83682 0.83576 0.75430 0.76460 0.90604 0.89604 0.93817 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.55 -14.46 7.75 -34.44 -0.27 -14.73 16 8 H 0.05 1.42 5.88 -52.49 -0.31 1.11 16 9 C 0.19 4.52 5.11 -4.97 -0.03 4.50 16 10 N -0.54 -10.44 4.83 -235.76 -1.14 -11.57 16 11 C 0.05 0.87 5.24 -3.70 -0.02 0.85 16 12 C 0.12 1.69 6.58 -3.60 -0.02 1.67 16 13 N -0.59 -8.39 3.01 -173.75 -0.52 -8.91 16 14 C 0.56 8.12 6.45 -12.54 -0.08 8.04 16 15 O -0.54 -9.15 15.47 5.27 0.08 -9.06 16 16 C -0.18 -2.24 4.87 -104.81 -0.51 -2.75 16 17 C -0.03 -0.32 7.47 -39.20 -0.29 -0.61 16 18 C -0.15 -1.36 9.80 -39.60 -0.39 -1.75 16 19 C -0.01 -0.06 6.32 -39.39 -0.25 -0.31 16 20 Cl -0.05 -0.47 28.59 -51.86 -1.48 -1.96 16 21 C 0.02 0.21 7.28 -39.26 -0.29 -0.07 16 22 F -0.13 -1.57 16.19 2.25 0.04 -1.53 16 23 C 0.25 3.14 6.76 -83.51 -0.56 2.57 16 24 N -0.85 -9.77 8.91 32.59 0.29 -9.48 16 25 C 0.10 1.31 5.66 -3.60 -0.02 1.29 16 26 C 0.05 0.87 5.15 -3.71 -0.02 0.85 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.04 0.82 6.92 -51.92 -0.36 0.46 16 31 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 32 H 0.09 1.29 7.09 -51.93 -0.37 0.92 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.15 1.11 7.43 -52.49 -0.39 0.72 16 35 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.41 5.12 7.00 -40.82 -0.29 4.84 16 37 H 0.41 3.87 8.32 -40.82 -0.34 3.53 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.97 4.93 -51.93 -0.26 0.71 16 40 H 0.04 0.86 6.79 -51.92 -0.35 0.51 16 41 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 LS Contribution 350.42 15.07 5.28 5.28 Total: -1.00 -29.71 350.42 -9.33 -39.04 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.74 Total: 5.55 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.84 Total: 1.29 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.63 Total: -54.47 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.48 Total: -1.96 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.71 -9.33 -39.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471237076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.207 kcal (2) G-P(sol) polarization free energy of solvation -29.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds