Wall clock time and date at job start Sat Apr 11 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 120.00022 * 2 1 4 4 H 1.48491 * 109.47399 * 240.00210 * 3 2 1 5 5 H 1.48501 * 109.47198 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46886 * 120.00123 * 3 2 1 7 7 C 1.37879 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99797 * 359.97438 * 7 2 1 10 10 N 1.46909 * 109.47049 * 185.00808 * 9 7 2 11 11 C 1.46900 * 110.99726 * 295.00723 * 10 9 7 12 12 C 1.53240 * 109.33739 * 187.24933 * 11 10 9 13 13 N 1.47077 * 108.52155 * 306.17315 * 12 11 10 14 14 C 1.34773 * 120.87938 * 230.90639 * 13 12 11 15 15 O 1.21611 * 120.00444 * 355.70231 * 14 13 12 16 16 C 1.47388 * 119.99866 * 175.69569 * 14 13 12 17 17 C 1.39818 * 120.18211 * 54.87701 * 16 14 13 18 18 C 1.37668 * 119.97239 * 180.02562 * 17 16 14 19 19 C 1.38763 * 120.35651 * 359.97438 * 18 17 16 20 20 Cl 1.73594 * 119.81405 * 180.02562 * 19 18 17 21 21 C 1.38244 * 120.37351 * 0.02562 * 19 18 17 22 22 F 1.35101 * 119.99122 * 180.02562 * 21 19 18 23 23 C 1.39086 * 120.01406 * 359.76343 * 21 19 18 24 24 N 1.39023 * 120.17387 * 180.25901 * 23 21 19 25 25 C 1.47086 * 118.23792 * 51.18482 * 13 12 11 26 26 C 1.46894 * 110.99662 * 59.31155 * 10 9 7 27 27 H 0.96996 * 119.99726 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47624 * 65.01030 * 9 7 2 29 29 H 1.08999 * 109.47776 * 305.01018 * 9 7 2 30 30 H 1.09009 * 109.49259 * 67.29342 * 11 10 9 31 31 H 1.08994 * 109.51690 * 307.22690 * 11 10 9 32 32 H 1.08998 * 109.62575 * 186.46085 * 12 11 10 33 33 H 1.08997 * 109.62514 * 65.88275 * 12 11 10 34 34 H 1.08002 * 120.01162 * 0.02562 * 17 16 14 35 35 H 1.08002 * 119.82018 * 180.02562 * 18 17 16 36 36 H 0.96996 * 120.00531 * 185.27302 * 24 23 21 37 37 H 0.97011 * 120.00130 * 5.27327 * 24 23 21 38 38 H 1.08998 * 109.62502 * 68.52159 * 25 13 12 39 39 H 1.08994 * 109.62827 * 189.10098 * 25 13 12 40 40 H 1.09009 * 109.49167 * 292.70448 * 26 10 9 41 41 H 1.09001 * 109.49773 * 52.78279 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2011 -3.6131 0.1198 11 6 3.0751 -3.6892 -1.0585 12 6 3.9233 -4.9630 -0.9798 13 7 4.6215 -4.9800 0.3146 14 6 5.9517 -5.1865 0.3803 15 8 6.5786 -5.4394 -0.6306 16 6 6.6468 -5.1056 1.6775 17 6 6.2182 -5.8873 2.7546 18 6 6.8702 -5.8080 3.9644 19 6 7.9536 -4.9554 4.1226 20 17 8.7659 -4.8670 5.6542 21 6 8.3896 -4.1760 3.0674 22 9 9.4454 -3.3489 3.2298 23 6 7.7449 -4.2471 1.8370 24 7 8.1840 -3.4688 0.7720 25 6 3.8286 -4.7720 1.5358 26 6 2.9841 -3.5058 1.3580 27 1 -0.4849 0.8400 0.0004 28 1 0.6930 -2.5965 -0.9318 29 1 0.5591 -2.5192 0.8414 30 1 3.7292 -2.8175 -1.0831 31 1 2.4664 -3.7128 -1.9624 32 1 4.6530 -4.9676 -1.7895 33 1 3.2782 -5.8379 -1.0594 34 1 5.3759 -6.5531 2.6375 35 1 6.5373 -6.4132 4.7947 36 1 7.6874 -3.4623 -0.0612 37 1 8.9871 -2.9321 0.8622 38 1 3.1744 -5.6286 1.6979 39 1 4.4956 -4.6505 2.3892 40 1 3.6395 -2.6367 1.2998 41 1 2.3091 -3.3965 2.2069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471237076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:14 Heat of formation + Delta-G solvation = -66.132336 kcal Electronic energy + Delta-G solvation = -27786.569362 eV Core-core repulsion = 23640.896150 eV Total energy + Delta-G solvation = -4145.673212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.105 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.00450 -41.76176 -39.89462 -38.84195 -37.70329 -36.22288 -35.56829 -34.33943 -32.63690 -31.39923 -30.13407 -29.65979 -27.26459 -25.36139 -24.64037 -23.83799 -23.50234 -22.04023 -20.42076 -19.15482 -18.76842 -18.48853 -18.28084 -17.59697 -16.92637 -16.87333 -16.73238 -16.30230 -16.24529 -15.98043 -15.83917 -15.53584 -15.10516 -15.04088 -14.50440 -14.29013 -14.13803 -13.69531 -13.58690 -13.34648 -13.18796 -13.14865 -12.97830 -12.91396 -12.54870 -12.45424 -12.23430 -12.08808 -11.99699 -11.84762 -11.65160 -11.54080 -11.00977 -10.62516 -9.88405 -9.75503 -9.05735 -8.82643 -8.18368 -6.37160 -0.40855 0.17740 0.86159 1.33691 1.34554 1.41976 1.42381 1.86155 2.33755 2.37928 2.56582 2.96571 3.07100 3.31306 3.40302 3.66031 3.84027 4.02880 4.10726 4.15491 4.29406 4.37172 4.52723 4.53708 4.64478 4.69264 4.77684 4.90724 4.98106 5.05624 5.07516 5.18982 5.22763 5.32068 5.41276 5.44154 5.72263 5.98910 6.07841 6.15249 6.32802 6.46114 6.49688 6.83155 6.97502 7.34352 8.83692 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.012030 B = 0.003347 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.872031 B = 8363.029419 C = 9195.050403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.018 3.982 3 Si 0.948 3.052 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.557 4.557 8 H 0.050 0.950 9 C 0.201 3.799 10 N -0.533 5.533 11 C 0.053 3.947 12 C 0.126 3.874 13 N -0.596 5.596 14 C 0.569 3.431 15 O -0.573 6.573 16 C -0.200 4.200 17 C -0.024 4.024 18 C -0.139 4.139 19 C -0.008 4.008 20 Cl -0.042 7.042 21 C 0.002 3.998 22 F -0.135 7.135 23 C 0.240 3.760 24 N -0.850 5.850 25 C 0.112 3.888 26 C 0.050 3.950 27 H 0.266 0.734 28 H 0.006 0.994 29 H 0.015 0.985 30 H 0.013 0.987 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.173 0.827 35 H 0.179 0.821 36 H 0.408 0.592 37 H 0.412 0.588 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.015 0.985 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.654 -13.458 8.866 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.182 4.182 3 Si 0.774 3.226 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.596 4.596 8 H 0.068 0.932 9 C 0.074 3.926 10 N -0.257 5.257 11 C -0.076 4.076 12 C 0.004 3.996 13 N -0.327 5.327 14 C 0.358 3.642 15 O -0.453 6.453 16 C -0.208 4.208 17 C -0.043 4.043 18 C -0.159 4.159 19 C -0.037 4.037 20 Cl -0.013 7.013 21 C -0.023 4.023 22 F -0.114 7.114 23 C 0.128 3.872 24 N -0.388 5.388 25 C -0.010 4.010 26 C -0.079 4.079 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.191 0.809 35 H 0.196 0.804 36 H 0.239 0.761 37 H 0.242 0.758 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.033 0.967 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.644 -13.859 8.483 21.874 hybrid contribution 0.990 2.706 -0.493 2.923 sum 15.634 -11.153 7.990 20.800 Atomic orbital electron populations 1.70028 1.07317 1.27922 1.50851 1.25692 0.95507 1.02389 0.94596 0.85768 0.78582 0.79588 0.78709 1.19956 1.20531 1.19735 1.21907 0.93034 0.93183 1.51447 0.93206 1.19422 0.91097 0.86267 0.95765 1.62443 1.17234 1.44057 1.01958 1.22251 0.94828 0.95903 0.94661 1.21741 0.94920 0.97920 0.85058 1.48188 1.06544 1.68915 1.09042 1.18179 0.81553 0.76186 0.88287 1.90773 1.66456 1.50560 1.37554 1.19253 1.00163 1.05277 0.96144 1.21393 0.98186 0.95298 0.89395 1.20966 0.94789 1.00546 0.99615 1.21097 0.97007 0.98740 0.86844 1.98399 1.78369 1.97408 1.27130 1.16659 0.92553 0.99837 0.93277 1.91467 1.53971 1.70151 1.95824 1.17473 0.91855 0.90822 0.87056 1.42400 1.32333 1.49779 1.14314 1.22286 0.94107 0.98157 0.86427 1.22285 0.95895 0.96141 0.93611 0.92529 0.97587 0.96725 0.96816 0.90457 0.89331 0.89013 0.80940 0.80393 0.76086 0.75756 0.87889 0.87274 0.96685 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.18 13.29 21.45 0.28 -52.90 16 2 C 0.02 1.00 5.46 84.65 0.46 1.46 16 3 Si 0.95 43.14 29.54 68.60 2.03 45.17 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.56 -29.66 7.75 25.60 0.20 -29.46 16 8 H 0.05 2.66 5.88 -2.91 -0.02 2.64 16 9 C 0.20 9.92 5.11 85.55 0.44 10.35 16 10 N -0.53 -20.59 4.83 -899.81 -4.35 -24.93 16 11 C 0.05 1.88 5.24 86.38 0.45 2.33 16 12 C 0.13 3.54 6.58 86.35 0.57 4.11 16 13 N -0.60 -15.68 3.01 -821.88 -2.47 -18.15 16 14 C 0.57 15.43 6.45 86.65 0.56 15.99 16 15 O -0.57 -18.73 15.47 -4.07 -0.06 -18.79 16 16 C -0.20 -4.51 4.87 -19.98 -0.10 -4.61 16 17 C -0.02 -0.37 7.47 22.52 0.17 -0.20 16 18 C -0.14 -1.95 9.80 22.26 0.22 -1.73 16 19 C -0.01 -0.16 6.32 22.40 0.14 -0.02 16 20 Cl -0.04 -0.75 28.59 -2.72 -0.08 -0.83 16 21 C 0.00 0.04 7.28 22.47 0.16 0.20 16 22 F -0.14 -3.22 16.19 44.97 0.73 -2.49 16 23 C 0.24 5.69 6.76 38.71 0.26 5.95 16 24 N -0.85 -19.56 8.91 -50.80 -0.45 -20.01 16 25 C 0.11 2.62 5.66 86.35 0.49 3.11 16 26 C 0.05 1.68 5.15 86.38 0.44 2.12 16 27 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.01 0.32 8.07 -2.39 -0.02 0.30 16 29 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.01 0.56 6.92 -2.38 -0.02 0.54 16 31 H 0.08 2.75 8.05 -2.39 -0.02 2.73 16 32 H 0.09 2.52 7.09 -2.39 -0.02 2.50 16 33 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.17 1.74 7.43 -2.91 -0.02 1.72 16 35 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.41 10.25 7.00 -92.71 -0.65 9.60 16 37 H 0.41 7.95 8.32 -92.70 -0.77 7.18 16 38 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.11 2.08 4.93 -2.39 -0.01 2.07 16 40 H 0.01 0.59 6.79 -2.38 -0.02 0.57 16 41 H 0.08 2.70 8.11 -2.39 -0.02 2.68 16 Total: -1.00 -65.20 350.42 -0.21 -65.41 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -0.31 Total: 17.92 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 4.47 Total: 9.60 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -6.99 Total: -115.99 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.06 Total: -18.79 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.73 Total: -2.49 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -65.20 -0.21 -65.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471237076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.721 kcal (2) G-P(sol) polarization free energy of solvation -65.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds