Wall clock time and date at job start Sat Apr 11 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42100 * 110.54265 * 2 1 4 4 O 1.42097 * 110.54403 * 223.25183 * 2 1 3 5 5 C 1.76200 * 104.44956 * 111.62571 * 2 1 3 6 6 N 1.30834 * 125.96262 * 270.04358 * 5 2 1 7 7 C 1.33241 * 109.83169 * 179.97438 * 6 5 2 8 8 N 1.30715 * 108.94302 * 359.97438 * 7 6 5 9 9 N 1.34423 * 125.96146 * 90.00101 * 5 2 1 10 10 C 1.46503 * 126.82414 * 0.02562 * 9 5 2 11 11 C 1.50697 * 109.46912 * 270.01831 * 10 9 5 12 12 O 1.21284 * 120.00122 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00213 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00128 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46614 * 89.99944 * 14 13 11 16 16 H 1.07995 * 120.00358 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99794 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00079 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00179 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.47065 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47529 * 119.99660 * 19 17 15 22 22 H 1.48507 * 109.47167 * 240.00096 * 19 17 15 23 23 C 1.46501 * 119.99562 * 359.97438 * 13 11 10 24 24 C 1.52996 * 109.47493 * 90.00290 * 23 13 11 25 25 C 1.47195 * 109.47379 * 180.02562 * 24 23 13 26 26 N 7.99501 * 106.54037 * 189.91838 * 2 1 3 27 27 H 1.09000 * 109.47208 * 308.37512 * 1 2 3 28 28 H 1.08999 * 109.47034 * 68.37367 * 1 2 3 29 29 H 1.08999 * 109.47320 * 188.37781 * 1 2 3 30 30 H 1.08002 * 125.52530 * 180.02562 * 7 6 5 31 31 H 1.08997 * 109.46928 * 30.01292 * 10 9 5 32 32 H 1.09000 * 109.47027 * 150.01768 * 10 9 5 33 33 H 1.08997 * 109.46997 * 209.99491 * 14 13 11 34 34 H 1.09000 * 109.47359 * 330.00366 * 14 13 11 35 35 H 0.97005 * 120.00038 * 180.02562 * 18 17 15 36 36 H 1.09000 * 109.46775 * 210.00466 * 23 13 11 37 37 H 1.08994 * 109.47137 * 329.99761 * 23 13 11 38 38 H 1.09004 * 109.46769 * 299.99846 * 24 23 13 39 39 H 1.09001 * 109.47069 * 59.99442 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9691 -0.9117 5 6 2.2536 -0.6288 1.5862 6 7 2.4446 0.0813 2.6683 7 6 2.7637 -0.7196 3.6841 8 7 2.7798 -1.9562 3.2607 9 7 2.4506 -1.9220 1.8958 10 6 2.3430 -3.0681 0.9896 11 6 0.9300 -3.5916 1.0076 12 8 0.0952 -3.0600 1.7086 13 7 0.5941 -4.6512 0.2453 14 6 -0.7794 -5.1605 0.2632 15 6 -1.5886 -4.4601 -0.7978 16 1 -1.1259 -3.7110 -1.4232 17 6 -2.9193 -4.7765 -0.9709 18 7 -3.4824 -5.6898 -0.2104 19 14 -3.9222 -3.9089 -2.2866 20 1 -3.0617 -2.9321 -3.0012 21 1 -4.4433 -4.9096 -3.2522 22 1 -5.0592 -3.1948 -1.6519 23 6 1.6026 -5.2936 -0.6011 24 6 2.2972 -6.4056 0.1876 25 6 3.3109 -7.0506 -0.6626 26 7 4.0901 -7.5496 -1.3201 27 1 -0.3633 0.6380 0.8056 28 1 -0.3633 0.3787 -0.9553 29 1 -0.3634 -1.0167 0.1497 30 1 2.9741 -0.3992 4.6938 31 1 2.6022 -2.7568 -0.0223 32 1 3.0256 -3.8534 1.3144 33 1 -0.7720 -6.2324 0.0660 34 1 -1.2235 -4.9738 1.2410 35 1 -4.4186 -5.9127 -0.3324 36 1 1.1206 -5.7191 -1.4813 37 1 2.3401 -4.5540 -0.9126 38 1 2.7792 -5.9801 1.0678 39 1 1.5596 -7.1452 0.4991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473077913.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:18 Heat of formation + Delta-G solvation = 31.782043 kcal Electronic energy + Delta-G solvation = -28248.702703 eV Core-core repulsion = 24129.239045 eV Total energy + Delta-G solvation = -4119.463658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.099 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.34753 -39.64091 -37.52697 -37.03623 -36.34639 -35.57433 -34.22076 -33.00632 -31.70211 -31.07610 -29.64909 -29.03728 -26.91992 -24.27411 -23.72898 -22.95815 -22.25141 -19.60199 -19.07499 -17.94195 -17.81072 -17.24134 -16.71194 -16.53529 -16.46141 -16.06329 -15.65195 -15.24950 -15.10828 -14.88030 -14.57431 -14.23091 -13.83466 -13.51082 -13.31348 -13.27463 -12.97471 -12.82680 -12.61737 -12.54046 -12.43898 -12.34851 -12.08279 -11.92458 -11.57860 -11.46540 -11.26597 -11.14287 -11.01711 -10.81421 -10.51257 -10.42501 -10.33256 -10.25562 -9.89144 -9.29886 -8.63929 -8.17619 -6.25569 -4.31625 -0.40030 0.89523 1.83375 2.29127 2.53773 2.58505 2.72731 2.80693 3.16550 3.24927 3.26203 3.34262 3.49222 3.69042 3.94930 4.25179 4.27240 4.41801 4.54591 4.70558 4.78140 4.86529 4.95102 5.03459 5.06253 5.10486 5.29822 5.63985 5.71368 5.75811 5.90843 6.11871 6.17235 6.63969 7.05958 7.17973 7.48124 7.57235 7.68805 7.86515 7.96455 8.39108 8.73070 9.34805 10.82636 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.008453 B = 0.005096 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.451803 B = 5493.232406 C = 7266.840484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.631 4.631 2 S 2.515 3.485 3 O -0.902 6.902 4 O -0.923 6.923 5 C -0.245 4.245 6 N -0.454 5.454 7 C 0.187 3.813 8 N -0.273 5.273 9 N -0.289 5.289 10 C 0.062 3.938 11 C 0.493 3.507 12 O -0.519 6.519 13 N -0.583 5.583 14 C 0.243 3.757 15 C -0.536 4.536 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.890 5.890 19 Si 0.895 3.105 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.106 3.894 24 C -0.052 4.052 25 C 0.215 3.785 26 N -0.439 5.439 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.228 0.772 31 H 0.161 0.839 32 H 0.134 0.866 33 H 0.041 0.959 34 H 0.049 0.951 35 H 0.265 0.735 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.883 6.501 2.384 12.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.785 4.785 2 S 2.685 3.315 3 O -0.898 6.898 4 O -0.920 6.920 5 C -0.601 4.601 6 N -0.181 5.181 7 C -0.116 4.116 8 N -0.102 5.102 9 N -0.082 5.082 10 C -0.064 4.064 11 C 0.276 3.724 12 O -0.395 6.395 13 N -0.314 5.314 14 C 0.125 3.875 15 C -0.574 4.574 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.020 4.020 24 C -0.093 4.093 25 C -0.104 4.104 26 N -0.116 5.116 27 H 0.160 0.840 28 H 0.164 0.836 29 H 0.169 0.831 30 H 0.244 0.756 31 H 0.178 0.822 32 H 0.152 0.848 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.152 5.835 1.673 12.696 hybrid contribution -1.426 0.053 0.275 1.454 sum 9.725 5.887 1.948 11.534 Atomic orbital electron populations 1.30077 1.21097 1.14495 1.12813 1.05638 0.79490 0.74841 0.71510 1.93635 1.78080 1.34255 1.83844 1.93546 1.78799 1.61751 1.57857 1.37765 1.12036 0.89133 1.21149 1.70452 1.16821 1.33968 0.96884 1.26274 0.99016 0.86025 1.00274 1.77967 1.20346 1.22600 0.89291 1.49671 1.46135 1.05215 1.07140 1.22723 0.99602 0.88619 0.95422 1.20211 0.88538 0.82157 0.81489 1.90772 1.50678 1.57477 1.40598 1.48211 1.12809 1.29174 1.41192 1.19498 0.74061 0.94711 0.99218 1.21412 0.95142 1.22904 1.17966 0.91960 1.24918 0.97572 0.95064 0.96278 1.69920 1.12941 1.31264 1.38695 0.86492 0.80223 0.79638 0.81405 1.19569 1.20791 1.20828 1.21524 0.91700 0.94369 0.94423 1.19871 0.93820 0.99307 0.96319 1.28940 0.93878 0.93576 0.93958 1.81191 1.11210 1.09530 1.09638 0.83995 0.83638 0.83136 0.75553 0.82202 0.84824 0.94092 0.93292 0.92526 0.87689 0.90000 0.87634 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -6.72 10.80 101.05 1.09 -5.63 16 2 S 2.51 31.18 5.89 -107.50 -0.63 30.55 16 3 O -0.90 -12.98 17.94 -57.54 -1.03 -14.02 16 4 O -0.92 -12.13 15.11 -57.54 -0.87 -13.00 16 5 C -0.25 -3.56 7.63 -90.66 -0.69 -4.25 16 6 N -0.45 -6.69 11.17 -15.01 -0.17 -6.86 16 7 C 0.19 2.45 13.03 -91.81 -1.20 1.25 16 8 N -0.27 -4.02 12.70 29.29 0.37 -3.65 16 9 N -0.29 -4.23 3.12 -62.91 -0.20 -4.42 16 10 C 0.06 0.79 5.23 -5.19 -0.03 0.76 16 11 C 0.49 8.05 7.74 -10.99 -0.09 7.96 16 12 O -0.52 -10.58 15.55 5.55 0.09 -10.50 16 13 N -0.58 -9.31 2.46 -175.06 -0.43 -9.74 16 14 C 0.24 5.16 5.16 -5.19 -0.03 5.14 16 15 C -0.54 -12.87 9.39 -34.44 -0.32 -13.19 16 16 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -23.79 13.29 55.43 0.74 -23.05 16 19 Si 0.89 19.59 29.54 -169.99 -5.02 14.57 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.11 1.21 5.17 -4.04 -0.02 1.19 16 24 C -0.05 -0.46 6.03 -29.52 -0.18 -0.64 16 25 C 0.21 2.35 15.43 -20.79 -0.32 2.03 16 26 N -0.44 -6.06 18.53 42.12 0.78 -5.28 16 27 H 0.14 1.29 8.14 -51.92 -0.42 0.86 16 28 H 0.15 1.14 8.14 -51.92 -0.42 0.72 16 29 H 0.15 1.96 7.68 -51.92 -0.40 1.57 16 30 H 0.23 1.88 8.06 -52.49 -0.42 1.45 16 31 H 0.16 1.81 4.70 -51.93 -0.24 1.57 16 32 H 0.13 1.25 7.18 -51.93 -0.37 0.88 16 33 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.05 1.21 7.42 -51.93 -0.39 0.82 16 35 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.10 1.26 8.07 -51.93 -0.42 0.84 16 37 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16 38 H 0.11 0.73 7.22 -51.93 -0.37 0.35 16 39 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -35.73 363.07 -6.96 -42.70 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.18 Total: 1.06 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.88 Total: -3.84 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 1.09 Total: -53.00 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.82 Total: -37.51 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Atomic # 16 Polarization: 31.18 SS G_CDS: -0.63 Total: 30.55 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.73 -6.96 -42.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473077913.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.479 kcal (2) G-P(sol) polarization free energy of solvation -35.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds