Wall clock time and date at job start Sat Apr 11 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99664 * 2 1 4 4 H 1.48503 * 109.47292 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47429 * 299.99926 * 3 2 1 6 6 H 1.48500 * 109.47469 * 60.00566 * 3 2 1 7 7 C 1.37874 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00302 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47042 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47144 * 179.97438 * 10 9 7 12 12 C 1.49648 * 110.99103 * 310.66332 * 11 10 9 13 13 C 1.52805 * 103.02999 * 213.72351 * 12 11 10 14 14 H 1.09004 * 109.81615 * 285.55946 * 13 12 11 15 15 C 1.50865 * 117.81937 * 158.87441 * 13 12 11 16 16 C 1.53446 * 108.45483 * 172.81705 * 15 13 12 17 17 C 1.52628 * 112.14745 * 67.26631 * 16 15 13 18 18 S 1.82218 * 110.51485 * 300.63238 * 17 16 15 19 19 O 1.42109 * 108.90580 * 166.92619 * 18 17 16 20 20 O 1.42101 * 108.90685 * 298.81168 * 18 17 16 21 21 C 1.55561 * 100.83944 * 41.41248 * 13 12 11 22 22 C 1.53001 * 111.12163 * 75.36032 * 21 13 12 23 23 F 1.39895 * 109.47253 * 67.11090 * 22 21 13 24 24 F 1.39898 * 109.47075 * 187.11614 * 22 21 13 25 25 F 1.39904 * 109.46474 * 307.11126 * 22 21 13 26 26 C 1.48654 * 111.00072 * 190.00151 * 11 10 9 27 27 H 0.96996 * 120.00155 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47027 * 60.00305 * 9 7 2 29 29 H 1.08999 * 109.46515 * 300.00452 * 9 7 2 30 30 H 1.09009 * 109.46800 * 60.00639 * 10 9 7 31 31 H 1.08996 * 109.47757 * 300.00140 * 10 9 7 32 32 H 1.08995 * 110.89640 * 95.29929 * 12 11 10 33 33 H 1.08998 * 110.64993 * 332.02909 * 12 11 10 34 34 H 1.08998 * 109.64060 * 292.50320 * 15 13 12 35 35 H 1.09004 * 109.63749 * 53.12563 * 15 13 12 36 36 H 1.08994 * 108.94741 * 187.96066 * 16 15 13 37 37 H 1.09008 * 108.94276 * 306.58010 * 16 15 13 38 38 H 1.08999 * 109.26967 * 60.89433 * 17 16 15 39 39 H 1.08998 * 109.27212 * 180.40008 * 17 16 15 40 40 H 1.09002 * 110.19051 * 359.48598 * 26 11 10 41 41 H 1.08995 * 110.25354 * 237.66230 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5110 -4.9343 0.0001 12 6 0.4549 -4.9431 1.0603 13 6 0.4272 -6.4042 1.5068 14 1 -0.0666 -7.0128 0.7492 15 6 -0.1484 -6.7141 2.8665 16 6 -0.2376 -8.2382 3.0203 17 6 1.1402 -8.8919 3.0817 18 16 2.0860 -8.5317 1.5665 19 8 3.4460 -8.8859 1.7774 20 8 1.3885 -9.0669 0.4501 21 6 1.9480 -6.7299 1.5365 22 6 2.6216 -6.1065 2.7606 23 9 2.1482 -6.7286 3.9208 24 9 4.0067 -6.2808 2.6700 25 9 2.3258 -4.7400 2.8101 26 6 2.4284 -6.0789 0.2411 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5568 -0.8903 29 1 0.6248 -2.5570 0.8897 30 1 2.8720 -3.6042 0.8896 31 1 2.8721 -3.6043 -0.8904 32 1 -0.5107 -4.6481 0.6496 33 1 0.7364 -4.2931 1.8887 34 1 0.5005 -6.3051 3.6409 35 1 -1.1441 -6.2784 2.9507 36 1 -0.7807 -8.4703 3.9364 37 1 -0.7863 -8.6480 2.1722 38 1 1.6831 -8.5064 3.9447 39 1 1.0224 -9.9707 3.1836 40 1 3.4521 -5.7227 0.3563 41 1 2.3684 -6.7904 -0.5824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473888575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:27 Heat of formation + Delta-G solvation = -183.204669 kcal Electronic energy + Delta-G solvation = -31096.317586 eV Core-core repulsion = 26496.922257 eV Total energy + Delta-G solvation = -4599.395330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.106 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.71995 -48.23156 -47.86049 -39.83052 -37.44624 -36.46155 -35.99024 -33.69198 -32.14156 -30.40932 -29.10390 -27.16136 -25.84210 -24.26725 -22.70278 -21.77707 -21.20470 -20.14375 -19.71226 -18.86292 -18.77725 -17.70837 -16.81399 -16.43603 -16.32706 -15.88900 -15.63258 -15.29723 -15.14050 -14.61560 -14.51698 -14.40470 -14.29466 -14.17430 -13.95756 -13.84311 -13.64982 -13.31784 -12.93358 -12.63116 -12.47523 -12.43999 -12.33818 -12.25326 -12.12483 -11.75762 -11.35203 -11.29728 -11.08297 -10.92581 -10.88242 -10.70781 -10.57180 -10.44617 -10.08146 -9.43507 -9.17068 -8.41118 -7.96930 -6.04410 -4.06518 -0.51337 2.02152 2.17494 2.96082 3.15567 3.28784 3.36028 3.36623 3.40643 3.68220 3.84349 4.01364 4.10145 4.18941 4.30217 4.39604 4.48379 4.62346 4.71197 5.05636 5.16253 5.24582 5.26939 5.32133 5.36505 5.48264 5.52514 5.66537 5.79742 6.01043 6.11364 6.26568 6.31651 6.81037 7.20321 7.22753 7.64993 7.78832 7.98443 8.37180 8.99963 9.57606 11.06996 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.021778 B = 0.003787 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.387095 B = 7391.834502 C = 7512.677625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.049 3.951 11 N -0.514 5.514 12 C 0.047 3.953 13 C -0.075 4.075 14 H 0.118 0.882 15 C -0.163 4.163 16 C -0.100 4.100 17 C -0.609 4.609 18 S 2.436 3.564 19 O -0.919 6.919 20 O -0.909 6.909 21 C -0.651 4.651 22 C 0.487 3.513 23 F -0.170 7.170 24 F -0.161 7.161 25 F -0.148 7.148 26 C 0.079 3.921 27 H 0.260 0.740 28 H 0.025 0.975 29 H 0.020 0.980 30 H 0.030 0.970 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.151 0.849 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.100 -19.196 8.633 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.078 4.078 11 N -0.238 5.238 12 C -0.081 4.081 13 C -0.094 4.094 14 H 0.136 0.864 15 C -0.201 4.201 16 C -0.138 4.138 17 C -0.739 4.739 18 S 2.613 3.387 19 O -0.916 6.916 20 O -0.906 6.906 21 C -0.738 4.738 22 C 0.432 3.568 23 F -0.151 7.151 24 F -0.142 7.142 25 F -0.129 7.129 26 C -0.050 4.050 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.169 0.831 39 H 0.156 0.844 40 H 0.100 0.900 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.011 -19.641 7.532 21.036 hybrid contribution 0.636 1.668 1.514 2.341 sum 0.648 -17.973 9.046 20.132 Atomic orbital electron populations 1.69965 1.06013 1.26529 1.50734 1.24969 0.94825 0.99181 0.95219 0.86545 0.80137 0.83779 0.77588 1.19754 1.20957 1.21044 1.21191 0.93046 0.90910 1.50817 0.92701 1.19166 0.93934 0.90262 0.97893 1.22665 0.97417 0.88095 0.99638 1.64701 1.11352 1.03112 1.44674 1.23186 0.97704 0.92223 0.94948 1.22117 0.85555 1.01979 0.99787 0.86372 1.22068 1.05242 0.95933 0.96819 1.21204 0.92954 0.94513 1.05172 1.30534 1.11188 1.10989 1.21216 1.07990 0.76511 0.75583 0.78574 1.93635 1.31974 1.79661 1.86320 1.93630 1.75210 1.73502 1.48304 1.32802 1.09096 1.29049 1.02885 1.19216 0.77169 0.78167 0.82263 1.92942 1.87120 1.81844 1.53236 1.93286 1.29864 1.95085 1.96011 1.93266 1.92423 1.30987 1.96253 1.22583 0.97977 0.95281 0.89160 0.93031 0.95637 0.96196 0.95223 0.91479 0.88428 0.89935 0.88127 0.88165 0.89067 0.89819 0.83075 0.84364 0.89996 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.62 4.65 -27.88 -0.13 0.49 16 10 C 0.05 0.99 4.58 -3.82 -0.02 0.97 16 11 N -0.51 -8.72 5.34 -230.99 -1.23 -9.95 16 12 C 0.05 0.71 4.38 -2.39 -0.01 0.70 16 13 C -0.07 -0.84 2.02 -90.43 -0.18 -1.02 16 14 H 0.12 1.22 7.31 -51.93 -0.38 0.84 16 15 C -0.16 -1.39 5.32 -27.57 -0.15 -1.54 16 16 C -0.10 -0.67 5.64 -26.69 -0.15 -0.82 16 17 C -0.61 -4.39 5.77 36.97 0.21 -4.18 16 18 S 2.44 26.78 4.46 -107.50 -0.48 26.30 16 19 O -0.92 -12.55 17.32 -57.78 -1.00 -13.55 16 20 O -0.91 -11.77 17.41 -57.78 -1.01 -12.78 16 21 C -0.65 -7.95 0.52 -89.40 -0.05 -7.99 16 22 C 0.49 6.22 1.93 37.16 0.07 6.30 16 23 F -0.17 -1.74 10.44 2.25 0.02 -1.72 16 24 F -0.16 -2.24 15.95 2.25 0.04 -2.20 16 25 F -0.15 -2.25 12.03 2.25 0.03 -2.23 16 26 C 0.08 1.12 5.89 -2.99 -0.02 1.10 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.02 0.51 6.49 -51.93 -0.34 0.18 16 30 H 0.03 0.60 6.57 -51.92 -0.34 0.26 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.08 1.37 4.67 -51.93 -0.24 1.12 16 34 H 0.10 0.90 4.49 -51.93 -0.23 0.67 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.51 7.96 -51.92 -0.41 0.09 16 38 H 0.15 1.00 5.52 -51.93 -0.29 0.71 16 39 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.15 6.88 -51.93 -0.36 0.79 16 41 H 0.10 1.29 7.88 -51.93 -0.41 0.88 16 LS Contribution 325.05 15.07 4.90 4.90 Total: -1.00 -32.96 325.05 -8.93 -41.89 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.08 Total: -2.37 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -0.83 Total: -19.19 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.50 Total: -35.47 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -2.01 Total: -26.33 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.09 Total: -6.15 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 26.78 SS G_CDS: -0.48 Total: 26.30 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.96 -8.93 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473888575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.316 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds