Wall clock time and date at job start Sat Apr 11 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86805 * 120.00025 * 2 1 4 4 H 1.48497 * 109.47144 * 275.24102 * 3 2 1 5 5 H 1.48500 * 109.47034 * 35.24055 * 3 2 1 6 6 H 1.48500 * 109.46875 * 155.23775 * 3 2 1 7 7 C 1.39943 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99753 * 345.30970 * 7 2 1 9 9 C 1.41396 * 119.99883 * 165.30605 * 7 2 1 10 10 C 1.40725 * 120.24588 * 330.95662 * 9 7 2 11 11 C 1.37600 * 119.74454 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24895 * 359.97438 * 11 10 9 13 13 C 1.38617 * 120.49777 * 359.72053 * 12 11 10 14 14 C 1.37627 * 120.24866 * 0.55939 * 13 12 11 15 15 S 1.76208 * 120.12720 * 179.71906 * 14 13 12 16 16 O 1.42097 * 106.39764 * 1.60117 * 15 14 13 17 17 O 1.42097 * 106.40074 * 228.68091 * 15 14 13 18 18 N 1.65595 * 107.21833 * 115.14161 * 15 14 13 19 19 C 1.47431 * 125.64686 * 276.32229 * 18 15 14 20 20 C 1.54910 * 104.82736 * 204.39178 * 19 18 15 21 21 H 1.09000 * 111.03513 * 81.08524 * 20 19 18 22 22 C 1.52999 * 111.00214 * 204.91267 * 20 19 18 23 23 O 1.42905 * 109.47469 * 287.20252 * 22 20 19 24 24 C 1.55156 * 101.58640 * 322.98886 * 20 19 18 25 25 H 1.08996 * 110.72031 * 277.13838 * 24 20 19 26 26 C 1.53001 * 110.71972 * 153.86635 * 24 20 19 27 27 O 1.42893 * 109.46933 * 180.02562 * 26 24 20 28 28 C 1.47019 * 125.64954 * 96.62917 * 18 15 14 29 29 H 0.97005 * 119.99906 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.12982 * 359.97438 * 10 9 7 31 31 H 1.08003 * 119.87483 * 179.97438 * 11 10 9 32 32 H 1.08000 * 119.74829 * 180.02562 * 12 11 10 33 33 H 1.07998 * 119.87173 * 180.30273 * 13 12 11 34 34 H 1.08994 * 110.36653 * 323.23109 * 19 18 15 35 35 H 1.09000 * 110.36836 * 85.55602 * 19 18 15 36 36 H 1.08999 * 109.47154 * 47.20027 * 22 20 19 37 37 H 1.08996 * 109.47371 * 167.20231 * 22 20 19 38 38 H 0.96698 * 114.00117 * 180.02562 * 23 22 20 39 39 H 1.09007 * 109.46947 * 300.02656 * 26 24 20 40 40 H 1.09001 * 109.47138 * 60.02269 * 26 24 20 41 41 H 0.96700 * 114.00241 * 179.97438 * 27 26 24 42 42 H 1.08997 * 109.88640 * 298.09254 * 28 18 15 43 43 H 1.09001 * 109.88284 * 59.25967 * 28 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3790 2.1104 -1.3942 5 1 1.4995 2.6182 0.8079 6 1 3.5908 1.4107 0.5864 7 6 2.0080 -1.2119 0.0005 8 1 1.4944 -2.1318 0.2381 9 6 3.3872 -1.2321 -0.3101 10 6 3.9340 -0.2632 -1.1719 11 6 5.2775 -0.2928 -1.4676 12 6 6.0919 -1.2720 -0.9195 13 6 5.5653 -2.2275 -0.0644 14 6 4.2233 -2.2206 0.2408 15 16 3.5559 -3.4412 1.3223 16 8 4.6477 -4.2521 1.7343 17 8 2.4017 -3.9611 0.6769 18 7 3.0197 -2.6550 2.6774 19 6 3.8506 -2.2706 3.8331 20 6 2.8585 -2.1695 5.0185 21 1 2.6435 -3.1541 5.4338 22 6 3.3898 -1.2258 6.0993 23 8 4.4688 -1.8555 6.7931 24 6 1.6051 -1.5722 4.3258 25 1 1.6897 -0.4887 4.2432 26 6 0.3324 -1.9614 5.0806 27 8 -0.8034 -1.3990 4.4208 28 6 1.6351 -2.2303 2.9302 29 1 -0.4850 0.8401 -0.0004 30 1 3.3014 0.5002 -1.6002 31 1 5.6992 0.4495 -2.1291 32 1 7.1454 -1.2874 -1.1567 33 1 6.2098 -2.9827 0.3607 34 1 4.6018 -3.0350 4.0312 35 1 4.3270 -1.3067 3.6539 36 1 3.7440 -0.3052 5.6356 37 1 2.5911 -0.9938 6.8037 38 1 4.8550 -1.3134 7.4945 39 1 0.2399 -3.0474 5.1012 40 1 0.3848 -1.5818 6.1011 41 1 -1.6473 -1.6057 4.8454 42 1 1.3244 -1.5095 2.1739 43 1 0.9730 -3.0960 2.9143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475533994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:36 Heat of formation + Delta-G solvation = -151.832143 kcal Electronic energy + Delta-G solvation = -29546.257986 eV Core-core repulsion = 25490.079811 eV Total energy + Delta-G solvation = -4056.178175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 3.45 seconds Orbital eigenvalues (eV) -39.10798 -37.86245 -36.70257 -36.31151 -36.01435 -34.89273 -33.88275 -31.72800 -30.70406 -30.09739 -29.62636 -25.61259 -25.21809 -24.76849 -22.05429 -21.20604 -21.13333 -20.11118 -18.26938 -17.74021 -17.46441 -17.09634 -16.95122 -16.35040 -16.11635 -15.35530 -14.97012 -14.78888 -14.29897 -14.10339 -13.92686 -13.68907 -13.57535 -13.19105 -12.91992 -12.84846 -12.61364 -12.29044 -11.97854 -11.91859 -11.65514 -11.35148 -11.25555 -11.18537 -11.11539 -10.97492 -10.91294 -10.69541 -10.67404 -10.51626 -10.27098 -10.04072 -9.94352 -9.81814 -9.48118 -9.23644 -8.33020 -8.17191 -7.82734 -7.18876 -4.86587 1.42493 2.10180 2.54229 2.93735 3.03850 3.13584 3.76096 3.83343 3.95448 4.24609 4.38162 4.57100 4.71511 4.81865 5.11460 5.12155 5.23195 5.26188 5.35273 5.47555 5.53901 5.56973 5.69732 5.83564 5.86000 5.91088 5.95326 6.05322 6.19915 6.27444 6.37540 6.45580 6.63577 6.67882 6.86865 6.95233 7.04616 7.11117 7.30015 7.44593 7.51630 7.57150 7.73108 7.84658 8.14589 8.32627 8.52973 9.78026 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009947 B = 0.006208 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.321598 B = 4509.495359 C = 5605.344137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.239 1.239 7 C -0.454 4.454 8 H 0.130 0.870 9 C 0.164 3.836 10 C -0.236 4.236 11 C -0.044 4.044 12 C -0.261 4.261 13 C 0.018 3.982 14 C -0.772 4.772 15 S 2.720 3.280 16 O -0.992 6.992 17 O -0.963 6.963 18 N -1.008 6.008 19 C 0.131 3.869 20 C -0.092 4.092 21 H 0.092 0.908 22 C 0.086 3.914 23 O -0.571 6.571 24 C -0.091 4.091 25 H 0.091 0.909 26 C 0.087 3.913 27 O -0.562 6.562 28 C 0.127 3.873 29 H 0.292 0.708 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.377 0.623 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.375 0.625 42 H 0.105 0.895 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.385 2.486 12.362 12.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.162 1.162 7 C -0.480 4.480 8 H 0.147 0.853 9 C 0.159 3.841 10 C -0.255 4.255 11 C -0.063 4.063 12 C -0.281 4.281 13 C -0.002 4.002 14 C -0.867 4.867 15 S 2.819 3.181 16 O -0.983 6.983 17 O -0.954 6.954 18 N -0.844 5.844 19 C 0.005 3.995 20 C -0.112 4.112 21 H 0.111 0.889 22 C 0.008 3.992 23 O -0.376 6.376 24 C -0.111 4.111 25 H 0.110 0.890 26 C 0.009 3.991 27 O -0.367 6.367 28 C 0.002 3.998 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.131 0.869 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.224 0.776 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.222 0.778 42 H 0.123 0.877 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.360 1.331 11.341 11.499 hybrid contribution 0.139 1.922 0.345 1.958 sum 1.499 3.253 11.686 12.223 Atomic orbital electron populations 1.69664 1.07980 1.30967 1.30298 1.26223 0.94843 1.01686 0.90798 0.86407 0.81573 0.79612 0.79181 1.19411 1.21370 1.16230 1.20396 0.92009 0.97706 1.37917 0.85253 1.17066 0.91971 0.88321 0.86760 1.21149 0.95351 1.03766 1.05227 1.20814 0.93710 0.95894 0.95836 1.20481 0.98407 1.01094 1.08138 1.20389 0.92692 0.94698 0.92402 1.29943 1.03007 1.26245 1.27456 1.00545 0.72535 0.73173 0.71812 1.93445 1.55559 1.66544 1.82736 1.93506 1.49941 1.77887 1.74084 1.58541 1.16417 1.77043 1.32420 1.21879 0.93140 1.00769 0.83676 1.22321 0.94684 0.99957 0.94240 0.88930 1.22159 0.88764 0.94933 0.93380 1.86514 1.51357 1.46770 1.52981 1.22213 0.91970 1.01601 0.95317 0.89038 1.22147 0.85894 0.96853 0.94238 1.86625 1.16497 1.77332 1.56215 1.21942 0.81502 0.99933 0.96432 0.89699 0.87827 0.88345 0.88142 0.86907 0.89904 0.91792 0.92971 0.93418 0.77615 0.93335 0.93839 0.77840 0.87692 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.84 13.93 55.55 0.77 -18.07 16 2 C 0.09 2.16 5.07 -17.34 -0.09 2.07 16 3 Si 0.91 19.33 24.40 -169.99 -4.15 15.18 16 4 H -0.27 -5.59 6.74 56.52 0.38 -5.21 16 5 H -0.29 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.24 -5.22 6.61 56.52 0.37 -4.85 16 7 C -0.45 -11.63 6.60 -37.74 -0.25 -11.88 16 8 H 0.13 3.56 4.90 -52.49 -0.26 3.30 16 9 C 0.16 4.10 5.16 -106.83 -0.55 3.54 16 10 C -0.24 -5.54 6.99 -38.88 -0.27 -5.82 16 11 C -0.04 -0.93 10.02 -39.66 -0.40 -1.33 16 12 C -0.26 -5.44 10.05 -39.29 -0.39 -5.83 16 13 C 0.02 0.40 9.53 -39.66 -0.38 0.02 16 14 C -0.77 -18.40 5.96 -38.87 -0.23 -18.63 16 15 S 2.72 61.88 5.27 -107.50 -0.57 61.32 16 16 O -0.99 -23.01 16.40 -57.17 -0.94 -23.95 16 17 O -0.96 -24.54 15.22 -57.17 -0.87 -25.41 16 18 N -1.01 -19.72 3.62 -111.42 -0.40 -20.12 16 19 C 0.13 2.15 6.58 -2.53 -0.02 2.13 16 20 C -0.09 -1.22 2.74 -88.47 -0.24 -1.46 16 21 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 22 C 0.09 0.90 6.50 37.16 0.24 1.14 16 23 O -0.57 -6.06 13.62 -35.23 -0.48 -6.54 16 24 C -0.09 -1.32 2.71 -88.78 -0.24 -1.56 16 25 H 0.09 1.34 8.04 -51.93 -0.42 0.93 16 26 C 0.09 1.05 6.36 37.16 0.24 1.28 16 27 O -0.56 -7.64 13.50 -35.23 -0.48 -8.11 16 28 C 0.13 2.39 5.74 -3.06 -0.02 2.38 16 29 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 30 H 0.10 2.37 4.37 -52.49 -0.23 2.14 16 31 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 32 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.11 2.29 7.32 -52.49 -0.38 1.91 16 34 H 0.08 1.36 7.81 -51.93 -0.41 0.96 16 35 H 0.06 1.01 7.91 -51.93 -0.41 0.60 16 36 H 0.05 0.53 7.96 -51.93 -0.41 0.11 16 37 H 0.05 0.41 8.10 -51.93 -0.42 -0.01 16 38 H 0.38 2.17 9.12 45.56 0.42 2.59 16 39 H 0.05 0.55 8.06 -51.92 -0.42 0.13 16 40 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 41 H 0.38 3.17 9.12 45.56 0.42 3.59 16 42 H 0.11 2.30 5.13 -51.93 -0.27 2.03 16 43 H 0.06 1.18 7.77 -51.93 -0.40 0.78 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -32.73 352.61 -8.46 -41.19 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -4.06 Total: 13.14 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: -2.60 Total: -33.94 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.37 Total: -38.19 kcal Atomic # 8 Polarization: -61.25 SS G_CDS: -2.76 Total: -64.01 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.15 Total: 15.18 kcal Atomic # 16 Polarization: 61.88 SS G_CDS: -0.57 Total: 61.32 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.73 -8.46 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475533994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.643 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.45 seconds