Wall clock time and date at job start Sat Apr 11 2020 06:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86805 * 120.00025 * 2 1 4 4 H 1.48497 * 109.47144 * 275.24102 * 3 2 1 5 5 H 1.48500 * 109.47034 * 35.24055 * 3 2 1 6 6 H 1.48500 * 109.46875 * 155.23775 * 3 2 1 7 7 C 1.39943 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99753 * 345.30970 * 7 2 1 9 9 C 1.41396 * 119.99883 * 165.30605 * 7 2 1 10 10 C 1.40725 * 120.24588 * 330.95662 * 9 7 2 11 11 C 1.37600 * 119.74454 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24895 * 359.97438 * 11 10 9 13 13 C 1.38617 * 120.49777 * 359.72053 * 12 11 10 14 14 C 1.37627 * 120.24866 * 0.55939 * 13 12 11 15 15 S 1.76208 * 120.12720 * 179.71906 * 14 13 12 16 16 O 1.42097 * 106.39764 * 1.60117 * 15 14 13 17 17 O 1.42097 * 106.40074 * 228.68091 * 15 14 13 18 18 N 1.65595 * 107.21833 * 115.14161 * 15 14 13 19 19 C 1.47431 * 125.64686 * 276.32229 * 18 15 14 20 20 C 1.54910 * 104.82736 * 204.39178 * 19 18 15 21 21 H 1.09000 * 111.03513 * 81.08524 * 20 19 18 22 22 C 1.52999 * 111.00214 * 204.91267 * 20 19 18 23 23 O 1.42905 * 109.47469 * 287.20252 * 22 20 19 24 24 C 1.55156 * 101.58640 * 322.98886 * 20 19 18 25 25 H 1.08996 * 110.72031 * 277.13838 * 24 20 19 26 26 C 1.53001 * 110.71972 * 153.86635 * 24 20 19 27 27 O 1.42893 * 109.46933 * 180.02562 * 26 24 20 28 28 C 1.47019 * 125.64954 * 96.62917 * 18 15 14 29 29 H 0.97005 * 119.99906 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.12982 * 359.97438 * 10 9 7 31 31 H 1.08003 * 119.87483 * 179.97438 * 11 10 9 32 32 H 1.08000 * 119.74829 * 180.02562 * 12 11 10 33 33 H 1.07998 * 119.87173 * 180.30273 * 13 12 11 34 34 H 1.08994 * 110.36653 * 323.23109 * 19 18 15 35 35 H 1.09000 * 110.36836 * 85.55602 * 19 18 15 36 36 H 1.08999 * 109.47154 * 47.20027 * 22 20 19 37 37 H 1.08996 * 109.47371 * 167.20231 * 22 20 19 38 38 H 0.96698 * 114.00117 * 180.02562 * 23 22 20 39 39 H 1.09007 * 109.46947 * 300.02656 * 26 24 20 40 40 H 1.09001 * 109.47138 * 60.02269 * 26 24 20 41 41 H 0.96700 * 114.00241 * 179.97438 * 27 26 24 42 42 H 1.08997 * 109.88640 * 298.09254 * 28 18 15 43 43 H 1.09001 * 109.88284 * 59.25967 * 28 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3790 2.1104 -1.3942 5 1 1.4995 2.6182 0.8079 6 1 3.5908 1.4107 0.5864 7 6 2.0080 -1.2119 0.0005 8 1 1.4944 -2.1318 0.2381 9 6 3.3872 -1.2321 -0.3101 10 6 3.9340 -0.2632 -1.1719 11 6 5.2775 -0.2928 -1.4676 12 6 6.0919 -1.2720 -0.9195 13 6 5.5653 -2.2275 -0.0644 14 6 4.2233 -2.2206 0.2408 15 16 3.5559 -3.4412 1.3223 16 8 4.6477 -4.2521 1.7343 17 8 2.4017 -3.9611 0.6769 18 7 3.0197 -2.6550 2.6774 19 6 3.8506 -2.2706 3.8331 20 6 2.8585 -2.1695 5.0185 21 1 2.6435 -3.1541 5.4338 22 6 3.3898 -1.2258 6.0993 23 8 4.4688 -1.8555 6.7931 24 6 1.6051 -1.5722 4.3258 25 1 1.6897 -0.4887 4.2432 26 6 0.3324 -1.9614 5.0806 27 8 -0.8034 -1.3990 4.4208 28 6 1.6351 -2.2303 2.9302 29 1 -0.4850 0.8401 -0.0004 30 1 3.3014 0.5002 -1.6002 31 1 5.6992 0.4495 -2.1291 32 1 7.1454 -1.2874 -1.1567 33 1 6.2098 -2.9827 0.3607 34 1 4.6018 -3.0350 4.0312 35 1 4.3270 -1.3067 3.6539 36 1 3.7440 -0.3052 5.6356 37 1 2.5911 -0.9938 6.8037 38 1 4.8550 -1.3134 7.4945 39 1 0.2399 -3.0474 5.1012 40 1 0.3848 -1.5818 6.1011 41 1 -1.6473 -1.6057 4.8454 42 1 1.3244 -1.5095 2.1739 43 1 0.9730 -3.0960 2.9143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475533994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:33 Heat of formation + Delta-G solvation = -180.893456 kcal Electronic energy + Delta-G solvation = -29547.518179 eV Core-core repulsion = 25490.079811 eV Total energy + Delta-G solvation = -4057.438368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.30167 -39.62279 -38.20081 -37.55734 -37.07210 -36.79122 -35.68478 -33.00465 -32.47454 -31.84772 -30.80678 -27.27657 -26.47037 -25.97451 -23.79399 -22.97089 -22.37015 -21.23400 -19.92931 -19.55570 -18.86821 -18.28950 -18.02834 -17.95247 -17.44542 -17.01090 -16.49463 -15.99233 -15.86065 -15.57694 -15.43628 -15.10494 -14.91503 -14.59028 -14.43482 -14.25954 -14.01647 -13.96128 -13.63436 -13.29328 -13.19802 -13.09273 -12.99278 -12.76302 -12.72376 -12.50001 -12.32667 -12.27988 -12.09086 -11.79480 -11.68177 -11.53182 -11.26788 -11.00808 -10.89187 -10.72106 -10.01484 -9.79861 -9.62012 -8.99873 -6.73903 -0.32834 0.32374 0.76788 1.21616 1.34767 1.43585 2.04044 2.18429 2.47939 2.89202 3.04947 3.27095 3.35905 3.40061 3.81190 3.86217 4.14127 4.18720 4.25008 4.28154 4.31468 4.46008 4.47513 4.54166 4.59600 4.61833 4.65662 4.70015 4.79657 4.88114 4.93600 4.95555 5.16427 5.19467 5.31811 5.35166 5.37092 5.48224 5.61443 5.69558 5.80926 6.06059 6.25906 6.51134 6.66483 7.00124 7.00687 8.03055 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009947 B = 0.006208 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.321598 B = 4509.495359 C = 5605.344137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.062 3.938 3 Si 0.954 3.046 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.246 1.246 7 C -0.478 4.478 8 H 0.096 0.904 9 C 0.147 3.853 10 C -0.259 4.259 11 C -0.040 4.040 12 C -0.250 4.250 13 C 0.002 3.998 14 C -0.789 4.789 15 S 2.728 3.272 16 O -1.001 7.001 17 O -1.001 7.001 18 N -1.007 6.007 19 C 0.120 3.880 20 C -0.080 4.080 21 H 0.097 0.903 22 C 0.092 3.908 23 O -0.590 6.590 24 C -0.084 4.084 25 H 0.090 0.910 26 C 0.088 3.912 27 O -0.592 6.592 28 C 0.124 3.876 29 H 0.301 0.699 30 H 0.107 0.893 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.399 0.601 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.071 0.929 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.251 4.320 13.881 14.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.159 4.159 3 Si 0.777 3.223 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.170 1.170 7 C -0.505 4.505 8 H 0.114 0.886 9 C 0.142 3.858 10 C -0.278 4.278 11 C -0.058 4.058 12 C -0.270 4.270 13 C -0.018 4.018 14 C -0.883 4.883 15 S 2.828 3.172 16 O -0.992 6.992 17 O -0.992 6.992 18 N -0.845 5.845 19 C -0.005 4.005 20 C -0.101 4.101 21 H 0.115 0.885 22 C 0.014 3.986 23 O -0.398 6.398 24 C -0.104 4.104 25 H 0.109 0.891 26 C 0.010 3.990 27 O -0.401 6.401 28 C -0.001 4.001 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.146 0.854 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.249 0.751 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.246 0.754 42 H 0.089 0.911 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.223 3.159 12.874 13.642 hybrid contribution -0.324 1.258 -0.142 1.307 sum 2.899 4.417 12.732 13.785 Atomic orbital electron populations 1.69678 1.08991 1.32191 1.31623 1.26782 0.95338 1.03747 0.90081 0.85681 0.80165 0.76680 0.79798 1.18244 1.19772 1.16995 1.20232 0.92739 0.97293 1.40234 0.88584 1.17268 0.91862 0.89343 0.87293 1.21323 0.96836 1.03985 1.05701 1.21292 0.92707 0.96410 0.95392 1.20991 1.00331 0.99575 1.06057 1.20733 0.92191 0.95799 0.93057 1.30140 1.03999 1.26036 1.28129 1.00034 0.71776 0.73273 0.72126 1.93415 1.55661 1.67163 1.82961 1.93453 1.51305 1.79061 1.75400 1.58283 1.17250 1.76737 1.32233 1.22189 0.93733 1.00769 0.83796 1.22275 0.92920 1.01089 0.93776 0.88454 1.22075 0.89749 0.93727 0.93089 1.86452 1.51534 1.47886 1.53967 1.22180 0.94274 1.01070 0.92899 0.89145 1.22199 0.84226 0.97281 0.95252 1.86570 1.18085 1.77770 1.57654 1.21920 0.80753 0.98860 0.98588 0.88749 0.87508 0.84267 0.84225 0.85424 0.90168 0.91299 0.92533 0.90523 0.75071 0.92875 0.89974 0.75449 0.91063 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.93 13.93 21.83 0.30 -40.63 16 2 C 0.06 3.08 5.07 85.26 0.43 3.52 16 3 Si 0.95 39.53 24.40 68.60 1.67 41.21 16 4 H -0.26 -10.10 6.74 99.48 0.67 -9.43 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 6 H -0.25 -10.40 6.61 99.48 0.66 -9.75 16 7 C -0.48 -25.72 6.60 23.46 0.15 -25.56 16 8 H 0.10 5.72 4.90 -2.91 -0.01 5.71 16 9 C 0.15 7.50 5.16 -21.29 -0.11 7.39 16 10 C -0.26 -11.94 6.99 22.73 0.16 -11.78 16 11 C -0.04 -1.56 10.02 22.22 0.22 -1.34 16 12 C -0.25 -9.59 10.05 22.46 0.23 -9.36 16 13 C 0.00 0.08 9.53 22.22 0.21 0.30 16 14 C -0.79 -38.18 5.96 22.73 0.14 -38.05 16 15 S 2.73 129.31 5.27 -56.49 -0.30 129.02 16 16 O -1.00 -47.39 16.40 -128.00 -2.10 -49.49 16 17 O -1.00 -54.48 15.22 -128.00 -1.95 -56.43 16 18 N -1.01 -40.84 3.62 -506.42 -1.83 -42.68 16 19 C 0.12 3.90 6.58 86.85 0.57 4.47 16 20 C -0.08 -2.01 2.74 -9.40 -0.03 -2.04 16 21 H 0.10 2.35 8.05 -2.39 -0.02 2.33 16 22 C 0.09 1.64 6.50 71.98 0.47 2.11 16 23 O -0.59 -10.74 13.62 -148.98 -2.03 -12.77 16 24 C -0.08 -2.40 2.71 -9.60 -0.03 -2.42 16 25 H 0.09 2.59 8.04 -2.39 -0.02 2.57 16 26 C 0.09 1.99 6.36 71.98 0.46 2.44 16 27 O -0.59 -15.80 13.50 -148.98 -2.01 -17.81 16 28 C 0.12 4.91 5.74 86.73 0.50 5.41 16 29 H 0.30 13.66 8.30 -92.70 -0.77 12.89 16 30 H 0.11 4.77 4.37 -2.91 -0.01 4.76 16 31 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 33 H 0.13 5.02 7.32 -2.91 -0.02 5.00 16 34 H 0.08 2.62 7.81 -2.39 -0.02 2.60 16 35 H 0.07 2.14 7.91 -2.39 -0.02 2.12 16 36 H 0.06 0.97 7.96 -2.39 -0.02 0.96 16 37 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 38 H 0.40 3.28 9.12 -74.06 -0.68 2.60 16 39 H 0.05 1.14 8.06 -2.38 -0.02 1.12 16 40 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 41 H 0.40 6.32 9.12 -74.06 -0.68 5.65 16 42 H 0.07 3.35 5.13 -2.39 -0.01 3.33 16 43 H 0.05 2.02 7.77 -2.39 -0.02 2.00 16 Total: -1.00 -73.82 352.61 -5.23 -79.05 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: -0.36 Total: 35.46 kcal Atomic # 6 Polarization: -68.30 SS G_CDS: 3.38 Total: -64.93 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -1.53 Total: -83.31 kcal Atomic # 8 Polarization: -128.41 SS G_CDS: -8.09 Total: -136.50 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.67 Total: 41.21 kcal Atomic # 16 Polarization: 129.31 SS G_CDS: -0.30 Total: 129.02 kcal Total: -73.82 -5.23 -79.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475533994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.844 kcal (2) G-P(sol) polarization free energy of solvation -73.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds