Wall clock time and date at job start Sat Apr 11 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.46093 * 2 1 4 4 C 1.54384 * 110.41113 * 237.58331 * 2 1 3 5 5 H 1.08999 * 110.32003 * 336.26278 * 4 2 1 6 6 N 1.46490 * 110.32143 * 98.37134 * 4 2 1 7 7 C 1.34785 * 119.99615 * 204.99860 * 6 4 2 8 8 O 1.21276 * 120.00112 * 0.02562 * 7 6 4 9 9 C 1.50699 * 119.99725 * 179.97438 * 7 6 4 10 10 S 1.80999 * 109.46990 * 180.02562 * 9 7 6 11 11 C 1.76194 * 100.00292 * 180.02562 * 10 9 7 12 12 H 1.08009 * 119.99877 * 359.97438 * 11 10 9 13 13 C 1.38797 * 120.00514 * 180.02562 * 11 10 9 14 14 N 1.31628 * 119.99739 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00299 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47068 * 89.99681 * 15 13 11 17 17 H 1.48502 * 109.47108 * 209.99482 * 15 13 11 18 18 H 1.48493 * 109.47143 * 329.99931 * 15 13 11 19 19 C 1.54260 * 105.05925 * 217.37249 * 4 2 1 20 20 C 1.54384 * 105.05906 * 359.97438 * 19 4 2 21 21 N 1.48558 * 104.59683 * 23.85737 * 20 19 4 22 22 C 1.46900 * 110.99870 * 200.95652 * 21 20 19 23 23 C 1.50703 * 109.47133 * 285.41717 * 22 21 20 24 24 C 1.33641 * 126.03640 * 90.01899 * 23 22 21 25 25 N 1.31774 * 114.50001 * 179.97438 * 24 23 22 26 26 C 1.29034 * 117.12480 * 0.02562 * 25 24 23 27 27 S 1.70974 * 110.16586 * 0.02562 * 26 25 24 28 28 H 1.09009 * 109.46895 * 299.04510 * 1 2 3 29 29 H 1.08999 * 109.47005 * 59.03979 * 1 2 3 30 30 H 1.08999 * 109.47553 * 179.04811 * 1 2 3 31 31 H 0.96994 * 120.00580 * 25.00214 * 6 4 2 32 32 H 1.08995 * 109.47273 * 299.99920 * 9 7 6 33 33 H 1.08998 * 109.47305 * 60.00398 * 9 7 6 34 34 H 0.97001 * 120.00562 * 180.02562 * 14 13 11 35 35 H 1.08993 * 110.32655 * 118.89205 * 19 4 2 36 36 H 1.09003 * 110.32104 * 241.00255 * 19 4 2 37 37 H 1.08997 * 110.41129 * 265.07311 * 20 19 4 38 38 H 1.09010 * 110.40544 * 142.63758 * 20 19 4 39 39 H 1.08999 * 109.46547 * 165.42129 * 22 21 20 40 40 H 1.08994 * 109.47162 * 45.41852 * 22 21 20 41 41 H 1.07997 * 122.74801 * 0.02562 * 24 23 22 42 42 H 1.07998 * 124.91318 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2214 5 1 1.3235 -1.4881 -1.5758 6 7 2.4333 0.1534 -2.2936 7 6 2.4396 -0.2651 -3.5748 8 8 2.1427 -1.4107 -3.8400 9 6 2.8144 0.6908 -4.6779 10 16 2.7279 -0.1631 -6.2715 11 6 3.2010 1.1492 -7.3479 12 1 3.4353 2.1224 -6.9424 13 6 3.2716 0.9326 -8.7170 14 7 2.9856 -0.2534 -9.2113 15 14 3.7726 2.3240 -9.8583 16 1 5.2474 2.3154 -10.0317 17 1 3.1179 2.1414 -11.1786 18 1 3.3508 3.6214 -9.2718 19 6 3.3177 -1.5190 -0.7053 20 6 3.4293 -1.1294 0.7844 21 7 2.0485 -0.7455 1.1755 22 6 2.0576 0.1026 2.3749 23 6 2.3511 -0.7441 3.5866 24 6 3.5621 -1.0090 4.0860 25 7 3.5556 -1.7771 5.1568 26 6 2.4065 -2.1753 5.5881 27 16 1.1585 -1.5605 4.5943 28 1 -0.3633 0.4990 0.8985 29 1 -0.3633 0.5287 -0.8812 30 1 -0.3634 -1.0275 -0.0171 31 1 2.6704 1.0698 -2.0816 32 1 2.1225 1.5331 -4.6794 33 1 3.8289 1.0542 -4.5147 34 1 3.0353 -0.4050 -10.1681 35 1 3.1860 -2.5962 -0.8064 36 1 4.2038 -1.1937 -1.2503 37 1 4.1077 -0.2851 0.9067 38 1 3.7693 -1.9800 1.3753 39 1 1.0836 0.5779 2.4911 40 1 2.8260 0.8688 2.2723 41 1 4.4714 -0.6243 3.6484 42 1 2.2552 -2.8064 6.4514 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566080310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:25 Heat of formation + Delta-G solvation = 17.285835 kcal Electronic energy + Delta-G solvation = -24080.547602 eV Core-core repulsion = 20506.748555 eV Total energy + Delta-G solvation = -3573.799047 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.41709 -39.78091 -38.45998 -34.75778 -32.55136 -32.44126 -31.72255 -30.09836 -28.71900 -26.53192 -25.59744 -25.22183 -24.16509 -21.63066 -20.73535 -20.45727 -20.07117 -18.38578 -17.83391 -16.85503 -16.36091 -16.14843 -15.72476 -15.23206 -14.83652 -14.81429 -14.64122 -14.43043 -14.32821 -13.97009 -13.82364 -13.41377 -13.17116 -12.97484 -12.60293 -12.35994 -12.21412 -12.06188 -11.84243 -11.59043 -11.46364 -11.30449 -11.07929 -11.04172 -10.86460 -10.77347 -10.00936 -9.83495 -9.68711 -9.45426 -9.35116 -9.08793 -8.95267 -8.91558 -8.25565 -6.51850 -6.23270 -3.93984 0.30756 0.99226 1.39765 2.43908 2.96006 3.04856 3.20948 3.25343 3.29184 3.51551 3.81602 3.96667 4.17337 4.19064 4.27669 4.55857 4.68610 4.81503 4.84269 4.90129 4.97102 5.07072 5.07998 5.11936 5.21116 5.27656 5.45411 5.49440 5.54102 5.62078 5.72188 5.74270 5.85426 5.94396 5.98689 6.01595 6.10814 6.31551 6.51368 6.69104 7.31657 7.57754 7.65390 8.33405 8.57874 9.22039 10.84115 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.036776 B = 0.001804 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.184563 B =15518.684307 C =15611.094121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.056 3.944 3 H 0.060 0.940 4 C 0.149 3.851 5 H 0.103 0.897 6 N -0.734 5.734 7 C 0.534 3.466 8 O -0.514 6.514 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.136 4.136 20 C 0.034 3.966 21 N -0.500 5.500 22 C 0.119 3.881 23 C -0.203 4.203 24 C 0.034 3.966 25 N -0.472 5.472 26 C 0.009 3.991 27 S 0.144 5.856 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.396 0.604 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.269 0.731 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.171 0.829 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.159 1.768 29.868 30.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.053 4.053 3 H 0.078 0.922 4 C 0.043 3.957 5 H 0.121 0.879 6 N -0.388 5.388 7 C 0.320 3.680 8 O -0.387 6.387 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.175 4.175 20 C -0.094 4.094 21 N -0.225 5.225 22 C -0.011 4.011 23 C -0.325 4.325 24 C -0.118 4.118 25 N -0.185 5.185 26 C -0.288 4.288 27 S 0.396 5.604 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.188 0.812 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -4.620 -1.015 29.715 30.089 hybrid contribution 2.187 3.615 -0.712 4.284 sum -2.433 2.600 29.003 29.221 Atomic orbital electron populations 1.21732 0.92831 1.03159 1.01742 1.22863 0.96851 0.95924 0.89664 0.92242 1.21599 0.96758 0.91524 0.85850 0.87927 1.46115 1.72186 1.14467 1.06046 1.20313 0.76275 0.88763 0.82665 1.90708 1.46079 1.19220 1.82708 1.23535 1.04224 1.02103 1.00575 1.85409 1.89752 1.16736 0.91363 1.22864 1.53582 0.98261 0.93734 0.90951 1.24992 0.94833 0.96479 0.97279 1.70014 1.45458 1.21252 1.13510 0.86169 0.78710 0.81156 0.79471 1.20277 1.20729 1.19714 1.22778 0.98730 1.01874 0.94156 1.23176 0.89185 1.00556 0.96451 1.65358 1.18965 1.36445 1.01697 1.20557 1.02438 0.91968 0.86114 1.25796 0.95763 1.07472 1.03505 1.21740 0.97810 0.98670 0.93585 1.66323 1.27155 1.12145 1.12846 1.28397 0.90755 1.04846 1.04842 1.84091 1.12633 1.43113 1.20518 0.92648 0.91600 0.91299 0.76998 0.89244 0.89289 0.92164 0.90152 0.90365 0.93510 0.89922 0.89196 0.92056 0.81168 0.78592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.34 37.16 0.35 -0.77 16 2 C 0.06 0.47 2.58 -66.08 -0.17 0.30 16 3 H 0.06 0.44 7.61 -51.93 -0.39 0.04 16 4 C 0.15 1.69 2.96 -66.55 -0.20 1.49 16 5 H 0.10 1.42 7.26 -51.93 -0.38 1.04 16 6 N -0.73 -9.15 5.03 -52.47 -0.26 -9.42 16 7 C 0.53 9.54 7.85 -10.98 -0.09 9.45 16 8 O -0.51 -11.33 15.51 5.56 0.09 -11.24 16 9 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 10 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 11 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 12 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 15 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 C -0.14 -1.46 6.79 -25.35 -0.17 -1.63 16 20 C 0.03 0.29 5.92 -2.18 -0.01 0.28 16 21 N -0.50 -4.12 5.01 -223.58 -1.12 -5.24 16 22 C 0.12 0.80 5.32 -4.97 -0.03 0.78 16 23 C -0.20 -1.53 5.83 -35.92 -0.21 -1.74 16 24 C 0.03 0.28 10.95 -19.19 -0.21 0.07 16 25 N -0.47 -4.42 10.54 -15.75 -0.17 -4.59 16 26 C 0.01 0.06 12.23 51.59 0.63 0.69 16 27 S 0.14 0.95 23.22 -107.50 -2.50 -1.55 16 28 H 0.05 0.37 7.31 -51.92 -0.38 -0.01 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 31 H 0.40 3.80 8.38 -40.82 -0.34 3.46 16 32 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 33 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.90 7.95 -51.93 -0.41 0.48 16 37 H 0.05 0.35 7.75 -51.93 -0.40 -0.05 16 38 H 0.08 0.73 8.08 -51.92 -0.42 0.31 16 39 H 0.09 0.54 7.18 -51.93 -0.37 0.17 16 40 H 0.06 0.36 7.77 -51.93 -0.40 -0.05 16 41 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.20 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -34.67 377.08 -10.47 -45.14 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.01 Total: 0.77 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 0.31 Total: -6.72 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.82 Total: -44.52 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -4.71 Total: -5.34 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.67 -10.47 -45.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566080310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.425 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds