Wall clock time and date at job start Sat Apr 11 2020 06:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38167 * 119.96805 * 2 1 4 4 C 1.38775 * 119.97057 * 180.25225 * 3 2 1 5 5 N 1.40119 * 120.05190 * 179.72207 * 4 3 2 6 6 C 1.34771 * 119.99748 * 18.96997 * 5 4 3 7 7 O 1.21590 * 120.00459 * 5.47486 * 6 5 4 8 8 N 1.34779 * 120.00118 * 185.46652 * 6 5 4 9 9 C 1.46964 * 120.59488 * 175.11623 * 8 6 5 10 10 C 1.53373 * 108.63483 * 235.20691 * 9 8 6 11 11 N 1.46964 * 108.63814 * 310.58213 * 10 9 8 12 12 C 1.36933 * 120.59059 * 235.20310 * 11 10 9 13 13 H 1.07996 * 120.00440 * 25.09495 * 12 11 10 14 14 C 1.38811 * 119.99941 * 204.81571 * 12 11 10 15 15 N 1.31623 * 120.00446 * 216.00604 * 14 12 11 16 16 Si 1.86805 * 119.99722 * 36.00922 * 14 12 11 17 17 H 1.48497 * 109.47293 * 95.65961 * 16 14 12 18 18 H 1.48506 * 109.46780 * 215.65780 * 16 14 12 19 19 H 1.48495 * 109.47292 * 335.65725 * 16 14 12 20 20 C 1.46964 * 118.81366 * 55.47472 * 11 10 9 21 21 C 1.46964 * 120.59007 * 355.10346 * 8 6 5 22 22 C 1.38976 * 119.90045 * 359.45283 * 4 3 2 23 23 Cl 1.73594 * 120.03192 * 180.24982 * 22 4 3 24 24 C 1.38186 * 119.93457 * 0.27355 * 22 4 3 25 25 C 1.38442 * 119.96543 * 179.70362 * 2 1 3 26 26 F 1.35098 * 119.95480 * 0.02562 * 25 2 1 27 27 H 1.09011 * 109.46851 * 270.29459 * 1 2 3 28 28 H 1.08999 * 109.47151 * 30.29290 * 1 2 3 29 29 H 1.08999 * 109.47292 * 150.29884 * 1 2 3 30 30 H 1.08007 * 120.01755 * 0.02562 * 3 2 1 31 31 H 0.96999 * 120.00031 * 198.97386 * 5 4 3 32 32 H 1.09004 * 109.60621 * 115.46619 * 9 8 6 33 33 H 1.08994 * 109.60916 * 354.95731 * 9 8 6 34 34 H 1.08998 * 109.61166 * 190.83236 * 10 9 8 35 35 H 1.09007 * 109.74736 * 70.40744 * 10 9 8 36 36 H 0.96999 * 120.00034 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.60948 * 64.27014 * 20 11 10 38 38 H 1.09002 * 109.60936 * 184.78209 * 20 11 10 39 39 H 1.09008 * 109.60808 * 244.53189 * 21 8 6 40 40 H 1.09005 * 109.61581 * 4.87107 * 21 8 6 41 41 H 1.07993 * 119.98605 * 180.02562 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5849 1.1970 -0.0053 5 7 4.2865 2.4099 -0.0112 6 6 3.6699 3.5468 0.3676 7 8 2.5375 3.5065 0.8085 8 7 4.3086 4.7286 0.2577 9 6 3.6131 5.9861 0.5655 10 6 3.7184 6.9148 -0.6505 11 7 5.1229 6.9688 -1.0800 12 6 5.7717 8.1695 -1.1917 13 1 5.4413 9.0180 -0.6110 14 6 6.8578 8.2945 -2.0470 15 7 7.8731 9.0629 -1.7136 16 14 6.8785 7.3722 -3.6714 17 1 6.3924 8.2651 -4.7538 18 1 8.2650 6.9356 -3.9750 19 1 5.9945 6.1828 -3.5765 20 6 5.8167 5.7117 -1.3932 21 6 5.7130 4.7827 -0.1717 22 6 4.2778 -0.0077 0.0009 23 17 6.0137 -0.0116 0.0009 24 6 3.5835 -1.2025 0.0066 25 6 2.1985 -1.1993 0.0062 26 9 1.5214 -2.3684 0.0117 27 1 -0.3633 0.0053 1.0278 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3634 -0.8926 -0.5092 30 1 1.6569 2.1322 0.0004 31 1 5.2160 2.4312 -0.2879 32 1 4.0795 6.4601 1.4293 33 1 2.5642 5.7811 0.7796 34 1 3.3805 7.9145 -0.3778 35 1 3.1021 6.5293 -1.4628 36 1 8.6319 9.1505 -2.3114 37 1 5.3468 5.2397 -2.2561 38 1 6.8648 5.9168 -1.6109 39 1 6.3289 5.1710 0.6395 40 1 6.0519 3.7824 -0.4416 41 1 4.1211 -2.1391 0.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661631235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:35 Heat of formation + Delta-G solvation = -1.207759 kcal Electronic energy + Delta-G solvation = -27510.242076 eV Core-core repulsion = 23367.384205 eV Total energy + Delta-G solvation = -4142.857871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.10189 -41.03522 -39.20107 -37.33269 -36.84591 -35.10213 -34.13623 -32.73259 -31.72704 -30.80759 -29.51238 -27.32128 -27.01301 -24.11060 -23.44988 -23.22888 -22.04153 -20.96161 -19.64286 -18.60159 -17.92825 -17.40405 -16.84227 -16.33468 -15.99366 -15.71950 -15.30891 -14.85989 -14.68336 -14.44411 -14.14408 -14.06476 -13.93687 -13.80245 -13.65172 -13.41581 -13.25143 -12.96543 -12.76769 -12.28068 -12.24511 -12.01781 -11.72697 -11.50087 -11.38793 -11.15277 -10.94550 -10.58314 -10.52641 -10.45511 -10.26997 -9.86808 -9.53554 -9.05479 -8.91528 -8.43080 -8.08363 -7.15229 -6.16584 -3.37430 0.68111 0.86572 1.70611 2.43302 2.89080 3.27449 3.36741 3.40447 3.46151 3.67646 4.04313 4.34601 4.42683 4.46461 4.69044 4.86669 4.89408 5.11735 5.26116 5.33508 5.35886 5.37604 5.45570 5.48994 5.63793 5.74913 5.76074 5.82111 5.91634 5.92433 6.04016 6.14760 6.17877 6.37147 6.45609 6.56774 6.63053 6.68353 6.90848 7.75365 7.77929 8.15632 8.40022 8.77878 9.57405 9.95079 10.97489 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.003075 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.471425 B = 9104.150997 C = 9929.087142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.108 4.108 4 C 0.190 3.810 5 N -0.681 5.681 6 C 0.706 3.294 7 O -0.578 6.578 8 N -0.606 5.606 9 C 0.112 3.888 10 C 0.132 3.868 11 N -0.599 5.599 12 C -0.276 4.276 13 H 0.085 0.915 14 C 0.038 3.962 15 N -0.880 5.880 16 Si 0.834 3.166 17 H -0.292 1.292 18 H -0.293 1.293 19 H -0.256 1.256 20 C 0.132 3.868 21 C 0.087 3.913 22 C -0.063 4.063 23 Cl -0.056 7.056 24 C -0.116 4.116 25 C 0.075 3.925 26 F -0.136 7.136 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.180 0.820 31 H 0.411 0.589 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.027 0.973 36 H 0.264 0.736 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 -19.604 3.798 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.128 4.128 4 C 0.091 3.909 5 N -0.329 5.329 6 C 0.409 3.591 7 O -0.458 6.458 8 N -0.341 5.341 9 C -0.012 4.012 10 C 0.005 3.995 11 N -0.322 5.322 12 C -0.403 4.403 13 H 0.103 0.897 14 C -0.164 4.164 15 N -0.519 5.519 16 Si 0.661 3.339 17 H -0.220 1.220 18 H -0.220 1.220 19 H -0.181 1.181 20 C 0.005 3.995 21 C -0.038 4.038 22 C -0.093 4.093 23 Cl -0.027 7.027 24 C -0.136 4.136 25 C 0.055 3.945 26 F -0.114 7.114 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.196 0.804 31 H 0.251 0.749 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.387 -19.391 4.081 21.927 hybrid contribution 1.029 -0.664 -1.256 1.754 sum -8.358 -20.055 2.825 21.910 Atomic orbital electron populations 1.20749 0.89494 1.03554 1.03214 1.20000 0.97559 0.91123 1.00199 1.21637 0.91495 0.99901 0.99784 1.17340 0.91370 0.83512 0.98683 1.42985 1.16059 1.05077 1.68770 1.15772 0.84372 0.80227 0.78772 1.90763 1.17793 1.85174 1.52036 1.47293 1.13154 1.04708 1.68902 1.22223 0.97365 0.82235 0.99342 1.21383 0.86446 0.98044 0.93637 1.44287 1.07032 1.02138 1.78765 1.18796 1.11030 0.89453 1.21002 0.89715 1.25175 0.95685 0.96969 0.98551 1.70093 1.05108 1.41251 1.35497 0.87689 0.77191 0.80964 0.88030 1.21963 1.21968 1.18077 1.21835 0.98103 0.86641 0.92882 1.22601 0.81095 0.99619 1.00494 1.20194 0.85030 0.92827 1.11248 1.98379 1.08590 1.98619 1.97120 1.20650 0.92312 0.97795 1.02825 1.17205 0.89111 0.81244 1.06989 1.91480 1.79898 1.45826 1.94222 0.90347 0.90455 0.91017 0.80355 0.74851 0.91175 0.89281 0.90393 0.95455 0.92643 0.94686 0.90291 0.90198 0.91982 0.83465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.83 36.01 0.35 -0.63 16 2 C -0.09 -0.96 5.88 -104.57 -0.62 -1.57 16 3 C -0.11 -1.36 8.45 -39.41 -0.33 -1.70 16 4 C 0.19 2.42 6.51 -83.60 -0.54 1.88 16 5 N -0.68 -9.08 5.18 -14.18 -0.07 -9.15 16 6 C 0.71 10.99 8.15 -86.92 -0.71 10.28 16 7 O -0.58 -9.90 12.63 5.29 0.07 -9.83 16 8 N -0.61 -9.61 2.95 -177.94 -0.52 -10.13 16 9 C 0.11 1.79 6.58 -3.60 -0.02 1.77 16 10 C 0.13 2.38 6.67 -3.60 -0.02 2.36 16 11 N -0.60 -13.02 2.73 -171.76 -0.47 -13.49 16 12 C -0.28 -7.13 9.88 -15.06 -0.15 -7.28 16 13 H 0.09 2.34 8.04 -52.49 -0.42 1.92 16 14 C 0.04 1.01 4.87 -17.43 -0.08 0.93 16 15 N -0.88 -25.28 13.97 55.49 0.78 -24.50 16 16 Si 0.83 19.92 26.32 -169.99 -4.47 15.45 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 19 H -0.26 -5.73 4.76 56.52 0.27 -5.46 16 20 C 0.13 2.58 4.52 -3.36 -0.02 2.56 16 21 C 0.09 1.36 6.61 -3.37 -0.02 1.33 16 22 C -0.06 -0.70 6.34 -39.33 -0.25 -0.95 16 23 Cl -0.06 -0.57 27.71 -51.86 -1.44 -2.01 16 24 C -0.12 -1.18 9.80 -39.50 -0.39 -1.57 16 25 C 0.08 0.81 7.24 -39.41 -0.29 0.53 16 26 F -0.14 -1.45 16.47 2.25 0.04 -1.42 16 27 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.07 0.56 7.63 -51.93 -0.40 0.16 16 30 H 0.18 2.51 5.36 -52.48 -0.28 2.22 16 31 H 0.41 4.95 5.06 -40.82 -0.21 4.74 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.35 7.02 -51.93 -0.36 0.98 16 34 H 0.08 1.36 7.92 -51.93 -0.41 0.95 16 35 H 0.03 0.50 8.14 -51.92 -0.42 0.07 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.04 0.69 6.72 -51.93 -0.35 0.35 16 38 H 0.08 1.65 5.33 -51.93 -0.28 1.38 16 39 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 40 H 0.06 0.79 5.55 -51.93 -0.29 0.50 16 41 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -29.27 343.94 -8.80 -38.08 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.80 Total: 3.90 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -3.09 Total: 7.93 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.29 Total: -57.27 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.47 Total: 15.45 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.44 Total: -2.01 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.27 -8.80 -38.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661631235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.868 kcal (2) G-P(sol) polarization free energy of solvation -29.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds