Wall clock time and date at job start Sat Apr 11 2020 06:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38167 * 119.96805 * 2 1 4 4 C 1.38775 * 119.97057 * 180.25225 * 3 2 1 5 5 N 1.40119 * 120.05190 * 179.72207 * 4 3 2 6 6 C 1.34771 * 119.99748 * 18.96997 * 5 4 3 7 7 O 1.21590 * 120.00459 * 5.47486 * 6 5 4 8 8 N 1.34779 * 120.00118 * 185.46652 * 6 5 4 9 9 C 1.46964 * 120.59488 * 175.11623 * 8 6 5 10 10 C 1.53373 * 108.63483 * 235.20691 * 9 8 6 11 11 N 1.46964 * 108.63814 * 310.58213 * 10 9 8 12 12 C 1.36933 * 120.59059 * 235.20310 * 11 10 9 13 13 H 1.07996 * 120.00440 * 25.09495 * 12 11 10 14 14 C 1.38811 * 119.99941 * 204.81571 * 12 11 10 15 15 N 1.31623 * 120.00446 * 216.00604 * 14 12 11 16 16 Si 1.86805 * 119.99722 * 36.00922 * 14 12 11 17 17 H 1.48497 * 109.47293 * 95.65961 * 16 14 12 18 18 H 1.48506 * 109.46780 * 215.65780 * 16 14 12 19 19 H 1.48495 * 109.47292 * 335.65725 * 16 14 12 20 20 C 1.46964 * 118.81366 * 55.47472 * 11 10 9 21 21 C 1.46964 * 120.59007 * 355.10346 * 8 6 5 22 22 C 1.38976 * 119.90045 * 359.45283 * 4 3 2 23 23 Cl 1.73594 * 120.03192 * 180.24982 * 22 4 3 24 24 C 1.38186 * 119.93457 * 0.27355 * 22 4 3 25 25 C 1.38442 * 119.96543 * 179.70362 * 2 1 3 26 26 F 1.35098 * 119.95480 * 0.02562 * 25 2 1 27 27 H 1.09011 * 109.46851 * 270.29459 * 1 2 3 28 28 H 1.08999 * 109.47151 * 30.29290 * 1 2 3 29 29 H 1.08999 * 109.47292 * 150.29884 * 1 2 3 30 30 H 1.08007 * 120.01755 * 0.02562 * 3 2 1 31 31 H 0.96999 * 120.00031 * 198.97386 * 5 4 3 32 32 H 1.09004 * 109.60621 * 115.46619 * 9 8 6 33 33 H 1.08994 * 109.60916 * 354.95731 * 9 8 6 34 34 H 1.08998 * 109.61166 * 190.83236 * 10 9 8 35 35 H 1.09007 * 109.74736 * 70.40744 * 10 9 8 36 36 H 0.96999 * 120.00034 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.60948 * 64.27014 * 20 11 10 38 38 H 1.09002 * 109.60936 * 184.78209 * 20 11 10 39 39 H 1.09008 * 109.60808 * 244.53189 * 21 8 6 40 40 H 1.09005 * 109.61581 * 4.87107 * 21 8 6 41 41 H 1.07993 * 119.98605 * 180.02562 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5849 1.1970 -0.0053 5 7 4.2865 2.4099 -0.0112 6 6 3.6699 3.5468 0.3676 7 8 2.5375 3.5065 0.8085 8 7 4.3086 4.7286 0.2577 9 6 3.6131 5.9861 0.5655 10 6 3.7184 6.9148 -0.6505 11 7 5.1229 6.9688 -1.0800 12 6 5.7717 8.1695 -1.1917 13 1 5.4413 9.0180 -0.6110 14 6 6.8578 8.2945 -2.0470 15 7 7.8731 9.0629 -1.7136 16 14 6.8785 7.3722 -3.6714 17 1 6.3924 8.2651 -4.7538 18 1 8.2650 6.9356 -3.9750 19 1 5.9945 6.1828 -3.5765 20 6 5.8167 5.7117 -1.3932 21 6 5.7130 4.7827 -0.1717 22 6 4.2778 -0.0077 0.0009 23 17 6.0137 -0.0116 0.0009 24 6 3.5835 -1.2025 0.0066 25 6 2.1985 -1.1993 0.0062 26 9 1.5214 -2.3684 0.0117 27 1 -0.3633 0.0053 1.0278 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3634 -0.8926 -0.5092 30 1 1.6569 2.1322 0.0004 31 1 5.2160 2.4312 -0.2879 32 1 4.0795 6.4601 1.4293 33 1 2.5642 5.7811 0.7796 34 1 3.3805 7.9145 -0.3778 35 1 3.1021 6.5293 -1.4628 36 1 8.6319 9.1505 -2.3114 37 1 5.3468 5.2397 -2.2561 38 1 6.8648 5.9168 -1.6109 39 1 6.3289 5.1710 0.6395 40 1 6.0519 3.7824 -0.4416 41 1 4.1211 -2.1391 0.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661631235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:34 Heat of formation + Delta-G solvation = -17.275979 kcal Electronic energy + Delta-G solvation = -27510.938847 eV Core-core repulsion = 23367.384205 eV Total energy + Delta-G solvation = -4143.554642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.93882 -42.14935 -40.24161 -38.71792 -37.68262 -36.18755 -35.70346 -33.64108 -33.45897 -32.23297 -30.55893 -28.71137 -27.95424 -25.55941 -24.92041 -24.34806 -23.09918 -22.21157 -20.91204 -19.88403 -18.83721 -18.61705 -18.17992 -17.52858 -17.21625 -16.78127 -16.57714 -16.35101 -15.98456 -15.64721 -15.44168 -15.26358 -14.98752 -14.85871 -14.67859 -14.58484 -14.29353 -14.14732 -14.11414 -13.92223 -13.49863 -12.96530 -12.78535 -12.60113 -12.55155 -12.39238 -12.25256 -12.19328 -12.10171 -11.89741 -11.50876 -11.36743 -11.06179 -10.70694 -10.00125 -9.87450 -9.11776 -8.87399 -8.21838 -5.38873 -0.19114 -0.01091 0.85711 1.29929 1.35932 1.48896 1.52588 1.79509 2.39936 2.43993 2.52128 2.93425 3.19578 3.34949 3.51132 3.67715 3.94458 3.99809 4.04406 4.09871 4.20928 4.36428 4.47699 4.53644 4.54294 4.61892 4.71961 4.72673 4.75941 4.83939 4.90679 4.97854 5.07221 5.16377 5.20398 5.28031 5.39297 5.72194 5.72997 5.84162 6.11695 6.60506 6.88488 7.21350 7.61809 8.02641 8.95771 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.003075 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.471425 B = 9104.150997 C = 9929.087142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.119 4.119 4 C 0.172 3.828 5 N -0.674 5.674 6 C 0.708 3.292 7 O -0.595 6.595 8 N -0.610 5.610 9 C 0.122 3.878 10 C 0.131 3.869 11 N -0.612 5.612 12 C -0.261 4.261 13 H 0.055 0.945 14 C -0.014 4.014 15 N -0.929 5.929 16 Si 0.896 3.104 17 H -0.307 1.307 18 H -0.295 1.295 19 H -0.231 1.231 20 C 0.127 3.873 21 C 0.098 3.902 22 C -0.062 4.062 23 Cl -0.046 7.046 24 C -0.109 4.109 25 C 0.073 3.927 26 F -0.134 7.134 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.165 0.835 31 H 0.417 0.583 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.262 0.738 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.744 -22.537 3.646 24.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.140 4.140 4 C 0.074 3.926 5 N -0.322 5.322 6 C 0.410 3.590 7 O -0.475 6.475 8 N -0.345 5.345 9 C -0.001 4.001 10 C 0.006 3.994 11 N -0.336 5.336 12 C -0.390 4.390 13 H 0.073 0.927 14 C -0.212 4.212 15 N -0.573 5.573 16 Si 0.723 3.277 17 H -0.236 1.236 18 H -0.222 1.222 19 H -0.155 1.155 20 C 0.001 3.999 21 C -0.027 4.027 22 C -0.093 4.093 23 Cl -0.018 7.018 24 C -0.129 4.129 25 C 0.053 3.947 26 F -0.112 7.112 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.182 0.818 31 H 0.258 0.742 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.223 -22.397 3.928 24.931 hybrid contribution 1.188 0.187 -1.135 1.654 sum -9.035 -22.210 2.793 24.139 Atomic orbital electron populations 1.20822 0.88058 1.04279 1.03921 1.20189 0.98696 0.90702 0.99277 1.21510 0.91627 0.99882 1.00972 1.17485 0.91574 0.83627 0.99887 1.42829 1.16205 1.04734 1.68457 1.15798 0.84120 0.80479 0.78576 1.90767 1.18538 1.85476 1.52721 1.47274 1.13157 1.04834 1.69240 1.22033 0.98119 0.82003 0.97990 1.21486 0.84471 0.98898 0.94580 1.44399 1.08628 1.01630 1.78961 1.18740 1.10415 0.90309 1.19548 0.92716 1.25661 0.95633 0.98730 1.01132 1.70178 1.06110 1.44424 1.36578 0.86712 0.77311 0.80383 0.83273 1.23577 1.22161 1.15452 1.21867 0.96925 0.86325 0.94790 1.22408 0.81188 1.00510 0.98553 1.20210 0.85583 0.92544 1.10914 1.98384 1.07710 1.98590 1.97067 1.20889 0.92197 0.98367 1.01408 1.17282 0.89433 0.81208 1.06812 1.91489 1.79915 1.45656 1.94183 0.89566 0.90003 0.90050 0.81849 0.74215 0.91258 0.88176 0.90375 0.94892 0.92866 0.94256 0.91855 0.90422 0.88581 0.81275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 9.83 71.24 0.70 -1.06 16 2 C -0.09 -1.75 5.88 -19.83 -0.12 -1.86 16 3 C -0.12 -2.84 8.45 22.38 0.19 -2.65 16 4 C 0.17 4.05 6.51 38.12 0.25 4.30 16 5 N -0.67 -16.45 5.18 -317.03 -1.64 -18.09 16 6 C 0.71 20.63 8.15 179.06 1.46 22.09 16 7 O -0.59 -19.47 12.63 -4.00 -0.05 -19.52 16 8 N -0.61 -18.13 2.95 -835.13 -2.46 -20.59 16 9 C 0.12 3.73 6.58 86.42 0.57 4.30 16 10 C 0.13 4.62 6.67 86.42 0.58 5.20 16 11 N -0.61 -26.16 2.73 -697.34 -1.91 -28.06 16 12 C -0.26 -13.68 9.88 84.03 0.83 -12.85 16 13 H 0.06 3.13 8.04 -2.91 -0.02 3.11 16 14 C -0.01 -0.76 4.87 84.86 0.41 -0.35 16 15 N -0.93 -54.86 13.97 21.65 0.30 -54.56 16 16 Si 0.90 41.55 26.32 68.60 1.81 43.35 16 17 H -0.31 -14.90 7.11 99.48 0.71 -14.20 16 18 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 19 H -0.23 -9.64 4.76 99.48 0.47 -9.16 16 20 C 0.13 4.73 4.52 86.57 0.39 5.12 16 21 C 0.10 2.84 6.61 86.57 0.57 3.42 16 22 C -0.06 -1.25 6.34 22.43 0.14 -1.10 16 23 Cl -0.05 -0.83 27.71 -2.72 -0.08 -0.90 16 24 C -0.11 -1.92 9.80 22.32 0.22 -1.70 16 25 C 0.07 1.40 7.24 22.38 0.16 1.57 16 26 F -0.13 -2.52 16.47 44.97 0.74 -1.78 16 27 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 29 H 0.08 1.09 7.63 -2.39 -0.02 1.07 16 30 H 0.16 4.44 5.36 -2.91 -0.02 4.43 16 31 H 0.42 8.88 5.06 -92.71 -0.47 8.41 16 32 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.10 2.86 7.02 -2.39 -0.02 2.85 16 34 H 0.08 2.71 7.92 -2.39 -0.02 2.69 16 35 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 37 H 0.04 1.45 6.72 -2.39 -0.02 1.43 16 38 H 0.06 2.57 5.33 -2.39 -0.01 2.55 16 39 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.10 2.13 5.55 -2.38 -0.01 2.12 16 41 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -62.85 343.94 3.46 -59.39 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.39 Total: 16.37 kcal Atomic # 6 Polarization: 18.05 SS G_CDS: 6.36 Total: 24.40 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -5.71 Total: -121.30 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.52 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.74 Total: -1.78 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.81 Total: 43.35 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.90 kcal Total: -62.85 3.46 -59.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661631235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.116 kcal (2) G-P(sol) polarization free energy of solvation -62.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds