Wall clock time and date at job start Sat Apr 11 2020 06:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.99834 * 2 1 4 4 C 1.54323 * 109.88368 * 121.09377 * 2 1 3 5 5 H 1.09002 * 110.72057 * 23.24789 * 4 2 1 6 6 N 1.46901 * 110.72170 * 260.15204 * 4 2 1 7 7 C 1.46896 * 111.00263 * 157.44064 * 6 4 2 8 8 C 1.50692 * 109.47488 * 180.02562 * 7 6 4 9 9 C 1.33642 * 126.03923 * 89.71326 * 8 7 6 10 10 N 1.31787 * 114.50073 * 179.79161 * 9 8 7 11 11 C 1.29024 * 117.12360 * 0.51947 * 10 9 8 12 12 S 1.70987 * 110.16847 * 359.71857 * 11 10 9 13 13 C 1.55153 * 103.10236 * 141.70038 * 4 2 1 14 14 C 1.54915 * 101.58175 * 324.40929 * 13 4 2 15 15 N 1.47428 * 104.83102 * 37.00975 * 14 13 4 16 16 C 1.34778 * 125.64860 * 155.91040 * 15 14 13 17 17 O 1.21278 * 119.99825 * 179.97438 * 16 15 14 18 18 C 1.50701 * 119.99622 * 359.97438 * 16 15 14 19 19 S 1.81000 * 109.46676 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00088 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99925 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00421 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99639 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00229 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47396 * 89.99914 * 24 22 20 26 26 H 1.48500 * 109.47190 * 209.99966 * 24 22 20 27 27 H 1.48503 * 109.47043 * 329.99797 * 24 22 20 28 28 H 1.09004 * 109.47442 * 298.90270 * 1 2 3 29 29 H 1.08999 * 109.47429 * 58.90757 * 1 2 3 30 30 H 1.09004 * 109.47135 * 178.90269 * 1 2 3 31 31 H 1.00895 * 111.00151 * 281.39868 * 6 4 2 32 32 H 1.09007 * 109.46847 * 300.00424 * 7 6 4 33 33 H 1.09006 * 109.46809 * 59.99924 * 7 6 4 34 34 H 1.08001 * 122.74786 * 359.97438 * 9 8 7 35 35 H 1.08005 * 124.92132 * 179.67874 * 11 10 9 36 36 H 1.09003 * 111.00505 * 82.48412 * 13 4 2 37 37 H 1.09001 * 111.00757 * 206.33495 * 13 4 2 38 38 H 1.09000 * 110.36497 * 155.84404 * 14 13 4 39 39 H 1.08998 * 110.36590 * 278.17045 * 14 13 4 40 40 H 1.08997 * 109.47351 * 299.99464 * 18 16 15 41 41 H 1.08992 * 109.47253 * 60.00061 * 18 16 15 42 42 H 0.96999 * 119.99517 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 1.3051 -1.4459 1.6183 6 7 2.4526 0.1986 2.2920 7 6 2.4385 -0.4424 3.6136 8 6 2.8504 0.5587 4.6619 9 6 2.0328 1.3744 5.3345 10 7 2.6371 2.1576 6.2052 11 6 3.9200 2.0553 6.2972 12 16 4.4959 0.8661 5.2120 13 6 3.2897 -1.5140 0.6969 14 6 2.8201 -1.8831 -0.7325 15 7 2.0352 -0.7197 -1.1841 16 6 1.8148 -0.3710 -2.4672 17 8 1.1503 0.6107 -2.7232 18 6 2.3943 -1.2010 -3.5836 19 16 1.9247 -0.4812 -5.1766 20 6 2.7127 -1.6166 -6.2696 21 1 3.2747 -2.4483 -5.8710 22 6 2.6121 -1.4416 -7.6428 23 7 1.9275 -0.4277 -8.1286 24 14 3.4469 -2.6457 -8.8015 25 1 2.5107 -3.7523 -9.1241 26 1 3.8325 -1.9432 -10.0517 27 1 4.6613 -3.1988 -8.1498 28 1 -0.3634 0.4967 0.8997 29 1 -0.3634 0.5307 -0.8800 30 1 -0.3633 -1.0275 -0.0197 31 1 3.3574 0.5987 2.0937 32 1 1.4333 -0.8035 3.8315 33 1 3.1348 -1.2811 3.6181 34 1 0.9641 1.3883 5.1793 35 1 4.5404 2.6371 6.9628 36 1 4.1668 -0.8676 0.6652 37 1 3.4871 -2.4092 1.2866 38 1 3.6788 -2.0380 -1.3857 39 1 2.1952 -2.7759 -0.7078 40 1 3.4807 -1.2173 -3.4981 41 1 2.0092 -2.2185 -3.5175 42 1 1.8575 -0.3052 -9.0883 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676628107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:42 Heat of formation + Delta-G solvation = 18.152432 kcal Electronic energy + Delta-G solvation = -24022.777168 eV Core-core repulsion = 20449.015700 eV Total energy + Delta-G solvation = -3573.761468 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.25424 -39.93352 -37.85403 -35.56040 -32.43359 -32.21583 -31.47777 -30.11278 -28.40463 -26.84129 -25.48787 -25.05829 -23.64080 -22.82859 -21.30524 -20.46366 -18.98977 -18.45323 -17.68145 -16.86950 -16.69233 -16.11123 -15.38374 -15.05530 -14.80812 -14.73929 -14.54905 -14.41749 -14.23841 -13.91634 -13.75933 -13.63100 -12.92974 -12.80907 -12.75821 -12.52687 -12.49408 -12.15020 -11.74370 -11.65082 -11.63201 -11.22897 -11.07212 -11.02428 -10.90414 -10.76381 -10.09270 -9.82489 -9.79189 -9.40482 -9.33313 -9.07035 -8.86502 -8.50081 -8.23134 -6.50257 -6.21950 -3.92503 0.24221 0.90054 1.28994 2.41881 2.86319 3.09203 3.21634 3.24548 3.29407 3.56321 3.76065 3.93371 4.19488 4.21117 4.28522 4.40294 4.63344 4.66713 4.84798 4.96195 5.00149 5.10014 5.12805 5.13102 5.28825 5.34474 5.42283 5.45651 5.56761 5.62642 5.71377 5.73107 5.76578 5.90545 6.05019 6.13063 6.31837 6.43965 6.59555 6.82675 7.27219 7.58931 7.69721 8.34709 8.59289 9.23199 10.85457 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.028511 B = 0.001871 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.824223 B =14963.720805 C =15326.166236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.148 3.852 3 H 0.081 0.919 4 C 0.082 3.918 5 H 0.098 0.902 6 N -0.673 5.673 7 C 0.139 3.861 8 C -0.217 4.217 9 C 0.053 3.947 10 N -0.472 5.472 11 C 0.021 3.979 12 S 0.116 5.884 13 C -0.165 4.165 14 C 0.105 3.895 15 N -0.625 5.625 16 C 0.550 3.450 17 O -0.512 6.512 18 C -0.147 4.147 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.347 0.653 32 H 0.097 0.903 33 H 0.047 0.953 34 H 0.178 0.822 35 H 0.199 0.801 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.168 -2.675 29.886 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.044 3.956 3 H 0.099 0.901 4 C -0.029 4.029 5 H 0.116 0.884 6 N -0.304 5.304 7 C 0.008 3.992 8 C -0.339 4.339 9 C -0.099 4.099 10 N -0.185 5.185 11 C -0.277 4.277 12 S 0.368 5.632 13 C -0.205 4.205 14 C -0.019 4.019 15 N -0.363 5.363 16 C 0.338 3.662 17 O -0.385 6.385 18 C -0.298 4.298 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.166 0.834 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.195 0.805 35 H 0.215 0.785 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.187 -0.789 29.460 29.767 hybrid contribution 1.349 -2.431 -0.560 2.836 sum 5.535 -3.219 28.900 29.601 Atomic orbital electron populations 1.22069 0.94386 1.01961 1.03129 1.21426 0.94742 0.96457 0.83009 0.90081 1.22716 0.96607 0.92566 0.90992 0.88416 1.60417 1.35855 1.33847 1.00288 1.20258 1.01826 0.91631 0.85494 1.25897 0.94973 1.06785 1.06219 1.21813 1.01936 0.92744 0.93384 1.66357 1.08237 1.23831 1.20085 1.28418 0.94259 1.01847 1.03196 1.84126 1.09284 1.35066 1.34720 1.23528 0.98707 1.01576 0.96698 1.22170 0.95750 0.89323 0.94671 1.48706 1.53923 1.28757 1.04948 1.19985 0.79865 0.85044 0.81308 1.90700 1.38483 1.26972 1.82387 1.23514 1.03544 1.02600 1.00096 1.85409 1.69467 1.37891 0.90550 1.22856 1.38136 1.14227 0.93126 0.90979 1.24994 0.95283 0.95988 0.97338 1.70022 1.38510 1.28176 1.13517 0.86169 0.79451 0.80264 0.79615 1.20272 1.20739 1.19721 0.91633 0.90875 0.92938 0.83369 0.88525 0.93516 0.80530 0.78477 0.90322 0.89943 0.90224 0.91311 0.89449 0.89403 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.10 37.16 0.34 -1.60 16 2 C 0.15 1.76 3.23 -66.70 -0.22 1.55 16 3 H 0.08 1.11 8.03 -51.93 -0.42 0.69 16 4 C 0.08 0.64 2.77 -65.88 -0.18 0.46 16 5 H 0.10 0.69 7.57 -51.93 -0.39 0.29 16 6 N -0.67 -4.80 6.28 -106.06 -0.67 -5.47 16 7 C 0.14 0.78 6.09 -4.98 -0.03 0.75 16 8 C -0.22 -1.46 6.11 -35.92 -0.22 -1.68 16 9 C 0.05 0.42 11.25 -19.18 -0.22 0.21 16 10 N -0.47 -4.25 10.54 -15.75 -0.17 -4.41 16 11 C 0.02 0.13 12.23 51.58 0.63 0.76 16 12 S 0.12 0.66 23.22 -107.50 -2.50 -1.83 16 13 C -0.17 -1.18 6.66 -24.58 -0.16 -1.34 16 14 C 0.10 1.05 6.69 -2.52 -0.02 1.04 16 15 N -0.63 -8.80 3.08 -162.66 -0.50 -9.30 16 16 C 0.55 10.55 7.67 -10.98 -0.08 10.47 16 17 O -0.51 -11.79 14.93 5.56 0.08 -11.71 16 18 C -0.15 -3.01 5.16 36.01 0.19 -2.82 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 24 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.15 6.93 -51.93 -0.36 0.79 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.35 2.50 8.25 -39.29 -0.32 2.18 16 32 H 0.10 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.20 0.67 8.06 -52.48 -0.42 0.25 16 36 H 0.08 0.57 7.79 -51.93 -0.40 0.16 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.80 7.48 -51.93 -0.39 0.42 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.66 7.85 -51.92 -0.41 1.26 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 377.74 15.07 5.69 5.69 Total: -1.00 -35.19 377.74 -10.37 -45.56 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.04 Total: -0.41 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 0.22 Total: -5.18 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.60 Total: -44.63 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.08 Total: -11.71 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -4.71 Total: -5.68 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.19 -10.37 -45.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676628107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.710 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds