Wall clock time and date at job start Sat Apr 11 2020 06:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99649 * 2 1 4 4 C 1.53004 * 109.46693 * 269.99795 * 3 2 1 5 5 N 1.46503 * 109.46697 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00072 * 179.97438 * 5 4 3 7 7 O 1.21528 * 119.99761 * 0.02562 * 6 5 4 8 8 C 1.48043 * 120.00259 * 179.97438 * 6 5 4 9 9 C 1.39385 * 119.69490 * 180.02562 * 8 6 5 10 10 C 1.38465 * 119.09496 * 180.02562 * 9 8 6 11 11 C 1.38895 * 118.47008 * 359.97438 * 10 9 8 12 12 F 1.35098 * 120.35213 * 179.97438 * 11 10 9 13 13 C 1.38881 * 119.30039 * 0.02562 * 11 10 9 14 14 N 1.31465 * 120.85378 * 0.02562 * 13 11 10 15 15 C 1.34770 * 119.99867 * 180.02562 * 2 1 3 16 16 O 1.21280 * 120.00031 * 180.02562 * 15 2 1 17 17 C 1.50703 * 120.00374 * 359.97438 * 15 2 1 18 18 S 1.80994 * 109.47225 * 180.02562 * 17 15 2 19 19 C 1.76209 * 100.00040 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99568 * 0.02562 * 19 18 17 21 21 C 1.38791 * 120.00112 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00181 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00012 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46961 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46903 * 120.00383 * 23 21 19 26 26 H 1.48494 * 109.47438 * 240.00377 * 23 21 19 27 27 H 1.09003 * 109.47275 * 90.00056 * 1 2 3 28 28 H 1.08998 * 109.47433 * 210.00403 * 1 2 3 29 29 H 1.08999 * 109.47414 * 329.99967 * 1 2 3 30 30 H 1.08998 * 109.46488 * 150.00293 * 3 2 1 31 31 H 1.08990 * 109.47559 * 30.00001 * 3 2 1 32 32 H 1.08994 * 109.47152 * 60.00227 * 4 3 2 33 33 H 1.08999 * 109.47137 * 300.00098 * 4 3 2 34 34 H 0.96997 * 120.00023 * 0.02562 * 5 4 3 35 35 H 1.07998 * 120.44821 * 0.27236 * 9 8 6 36 36 H 1.08000 * 120.76351 * 180.02562 * 10 9 8 37 37 H 1.07994 * 119.57634 * 180.02562 * 13 11 10 38 38 H 1.09004 * 109.46891 * 300.00651 * 17 15 2 39 39 H 1.08997 * 109.47258 * 59.99709 * 17 15 2 40 40 H 0.96995 * 119.99796 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 7 3.1854 2.9789 -1.4426 6 6 3.5229 3.5622 -2.6098 7 8 3.2187 3.0361 -3.6622 8 6 4.2631 4.8443 -2.6098 9 6 4.6084 5.4422 -3.8206 10 6 5.3011 6.6410 -3.8062 11 6 5.6256 7.2034 -2.5784 12 9 6.3013 8.3718 -2.5199 13 6 5.2491 6.5514 -1.4113 14 7 4.5926 5.4133 -1.4566 15 6 2.1388 -1.1672 -0.0005 16 8 3.3516 -1.1672 -0.0001 17 6 1.3854 -2.4723 -0.0005 18 16 2.5616 -3.8480 -0.0005 19 6 1.4415 -5.2083 0.0003 20 1 0.3762 -5.0305 0.0001 21 6 1.9282 -6.5080 -0.0001 22 7 3.2266 -6.7247 -0.0004 23 14 0.7407 -7.9501 0.0015 24 1 -0.6548 -7.4421 0.0023 25 1 0.9652 -8.7774 -1.2111 26 1 0.9676 -8.7770 1.2138 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 3.1498 1.1384 0.5138 31 1 1.6084 2.0284 0.5138 32 1 1.5000 1.8406 -1.9564 33 1 3.0415 0.9507 -1.9563 34 1 3.4284 3.3986 -0.6026 35 1 4.3358 4.9787 -4.7572 36 1 5.5819 7.1279 -4.7284 37 1 5.4987 6.9850 -0.4543 38 1 0.7590 -2.5302 0.8897 39 1 0.7583 -2.5299 -0.8902 40 1 3.5667 -7.6330 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688320314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:49 Heat of formation + Delta-G solvation = -72.306779 kcal Electronic energy + Delta-G solvation = -25261.487546 eV Core-core repulsion = 21117.590296 eV Total energy + Delta-G solvation = -4143.897250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.64307 -41.06794 -39.69612 -39.09094 -36.04735 -34.72678 -33.19097 -32.43217 -31.89076 -30.52548 -28.36435 -26.57328 -25.52637 -25.04250 -24.43552 -22.95910 -21.25504 -19.45925 -18.63274 -18.10274 -17.89125 -17.69819 -16.73848 -16.50185 -16.36262 -15.79541 -15.70503 -15.42532 -15.15619 -14.80761 -14.54265 -14.41813 -14.28469 -13.93715 -13.76579 -13.44097 -13.25961 -13.11941 -12.96574 -12.57568 -12.43158 -12.31763 -11.85905 -11.46820 -11.07306 -11.02333 -10.78656 -10.75299 -10.64512 -10.22862 -9.80536 -9.67020 -9.44783 -9.30694 -9.07736 -8.68608 -8.23194 -6.50818 -6.22112 -3.92852 -0.10273 0.42169 2.21440 2.49351 2.97945 3.03509 3.21511 3.22391 3.25630 3.29768 3.32281 3.54829 3.65138 4.05634 4.10671 4.19619 4.27191 4.65604 4.67942 4.74588 5.03463 5.05595 5.06340 5.13210 5.19754 5.23052 5.27306 5.40285 5.54108 5.66068 5.76344 5.81158 5.86497 5.88687 6.05514 6.11680 6.53589 6.87471 7.22299 7.42137 7.59605 7.82614 8.35002 8.47851 9.23367 10.85378 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.028194 B = 0.001678 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.886018 B =16683.914489 C =16923.760326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.622 5.622 3 C 0.109 3.891 4 C 0.101 3.899 5 N -0.704 5.704 6 C 0.572 3.428 7 O -0.526 6.526 8 C 0.070 3.930 9 C -0.080 4.080 10 C -0.115 4.115 11 C 0.070 3.930 12 F -0.124 7.124 13 C 0.077 3.923 14 N -0.431 5.431 15 C 0.533 3.467 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.411 0.589 35 H 0.161 0.839 36 H 0.157 0.843 37 H 0.177 0.823 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.355 30.107 -3.000 30.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C -0.015 4.015 4 C -0.024 4.024 5 N -0.356 5.356 6 C 0.356 3.644 7 O -0.402 6.402 8 C -0.068 4.068 9 C -0.101 4.101 10 C -0.141 4.141 11 C 0.048 3.952 12 F -0.102 7.102 13 C -0.085 4.085 14 N -0.142 5.142 15 C 0.321 3.679 16 O -0.384 6.384 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.247 0.753 35 H 0.179 0.821 36 H 0.174 0.826 37 H 0.194 0.806 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.108 29.135 -2.973 29.287 hybrid contribution -1.693 0.023 -0.398 1.739 sum -1.585 29.158 -3.371 29.395 Atomic orbital electron populations 1.21829 0.79194 1.03343 1.02020 1.47742 1.06994 1.05128 1.76035 1.21452 0.99078 0.85787 0.95232 1.21876 0.97045 0.84884 0.98580 1.45649 1.57083 1.23941 1.08910 1.17666 0.79236 0.83258 0.84251 1.90841 1.54379 1.63807 1.31162 1.21265 0.99702 0.96343 0.89478 1.22093 0.94326 0.93570 1.00110 1.21728 0.98393 0.96055 0.97929 1.19084 0.96083 0.84201 0.95825 1.91564 1.77007 1.44458 1.97189 1.22960 0.96097 0.91431 0.97983 1.67599 1.09136 1.08901 1.28517 1.20424 0.87980 0.84571 0.74902 1.90710 1.13702 1.86709 1.47320 1.23561 1.04595 0.97050 1.04861 1.85419 1.08025 0.93372 1.96706 1.22897 0.94335 0.92172 1.58873 0.90850 1.24996 0.95676 0.98398 0.94531 1.70029 1.11735 1.21574 1.46912 0.86113 0.80339 0.81117 0.77901 1.19606 1.20567 1.20571 0.92562 0.90360 0.91248 0.89017 0.90069 0.90935 0.90222 0.75275 0.82139 0.82553 0.80641 0.89116 0.89104 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.28 59.85 0.62 1.37 16 2 N -0.62 -8.20 2.87 -181.57 -0.52 -8.72 16 3 C 0.11 1.17 5.57 -4.04 -0.02 1.15 16 4 C 0.10 1.16 6.00 -4.04 -0.02 1.14 16 5 N -0.70 -7.18 5.54 -61.19 -0.34 -7.52 16 6 C 0.57 6.64 7.81 -12.24 -0.10 6.55 16 7 O -0.53 -7.77 16.32 5.34 0.09 -7.68 16 8 C 0.07 0.65 6.75 -83.02 -0.56 0.09 16 9 C -0.08 -0.59 9.63 -39.07 -0.38 -0.97 16 10 C -0.11 -0.64 10.15 -39.25 -0.40 -1.04 16 11 C 0.07 0.43 7.36 -39.10 -0.29 0.14 16 12 F -0.12 -0.79 17.28 2.25 0.04 -0.75 16 13 C 0.08 0.48 11.17 -17.47 -0.20 0.28 16 14 N -0.43 -3.51 9.53 -9.74 -0.09 -3.61 16 15 C 0.53 9.84 7.69 -10.99 -0.08 9.75 16 16 O -0.51 -11.38 15.44 5.56 0.09 -11.29 16 17 C -0.15 -2.99 4.71 36.01 0.17 -2.83 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.15 9.50 30.94 0.29 -14.86 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 23 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 29 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 30 H 0.09 1.12 7.42 -51.93 -0.39 0.74 16 31 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.41 3.36 7.80 -40.82 -0.32 3.04 16 35 H 0.16 1.09 7.64 -52.49 -0.40 0.69 16 36 H 0.16 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.09 1.65 7.40 -51.91 -0.38 1.27 16 39 H 0.09 1.69 8.11 -51.92 -0.42 1.27 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -36.60 371.02 -7.44 -44.04 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.72 Total: 0.16 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.06 Total: 2.76 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.22 Total: -45.26 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.17 Total: -18.98 kcal Atomic # 9 Polarization: -0.79 SS G_CDS: 0.04 Total: -0.75 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.60 -7.44 -44.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688320314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.269 kcal (2) G-P(sol) polarization free energy of solvation -36.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds