Wall clock time and date at job start Sat Apr 11 2020 06:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99649 * 2 1 4 4 C 1.53004 * 109.46693 * 269.99795 * 3 2 1 5 5 N 1.46503 * 109.46697 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00072 * 179.97438 * 5 4 3 7 7 O 1.21528 * 119.99761 * 0.02562 * 6 5 4 8 8 C 1.48043 * 120.00259 * 179.97438 * 6 5 4 9 9 C 1.39385 * 119.69490 * 180.02562 * 8 6 5 10 10 C 1.38465 * 119.09496 * 180.02562 * 9 8 6 11 11 C 1.38895 * 118.47008 * 359.97438 * 10 9 8 12 12 F 1.35098 * 120.35213 * 179.97438 * 11 10 9 13 13 C 1.38881 * 119.30039 * 0.02562 * 11 10 9 14 14 N 1.31465 * 120.85378 * 0.02562 * 13 11 10 15 15 C 1.34770 * 119.99867 * 180.02562 * 2 1 3 16 16 O 1.21280 * 120.00031 * 180.02562 * 15 2 1 17 17 C 1.50703 * 120.00374 * 359.97438 * 15 2 1 18 18 S 1.80994 * 109.47225 * 180.02562 * 17 15 2 19 19 C 1.76209 * 100.00040 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99568 * 0.02562 * 19 18 17 21 21 C 1.38791 * 120.00112 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00181 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00012 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46961 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46903 * 120.00383 * 23 21 19 26 26 H 1.48494 * 109.47438 * 240.00377 * 23 21 19 27 27 H 1.09003 * 109.47275 * 90.00056 * 1 2 3 28 28 H 1.08998 * 109.47433 * 210.00403 * 1 2 3 29 29 H 1.08999 * 109.47414 * 329.99967 * 1 2 3 30 30 H 1.08998 * 109.46488 * 150.00293 * 3 2 1 31 31 H 1.08990 * 109.47559 * 30.00001 * 3 2 1 32 32 H 1.08994 * 109.47152 * 60.00227 * 4 3 2 33 33 H 1.08999 * 109.47137 * 300.00098 * 4 3 2 34 34 H 0.96997 * 120.00023 * 0.02562 * 5 4 3 35 35 H 1.07998 * 120.44821 * 0.27236 * 9 8 6 36 36 H 1.08000 * 120.76351 * 180.02562 * 10 9 8 37 37 H 1.07994 * 119.57634 * 180.02562 * 13 11 10 38 38 H 1.09004 * 109.46891 * 300.00651 * 17 15 2 39 39 H 1.08997 * 109.47258 * 59.99709 * 17 15 2 40 40 H 0.96995 * 119.99796 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 7 3.1854 2.9789 -1.4426 6 6 3.5229 3.5622 -2.6098 7 8 3.2187 3.0361 -3.6622 8 6 4.2631 4.8443 -2.6098 9 6 4.6084 5.4422 -3.8206 10 6 5.3011 6.6410 -3.8062 11 6 5.6256 7.2034 -2.5784 12 9 6.3013 8.3718 -2.5199 13 6 5.2491 6.5514 -1.4113 14 7 4.5926 5.4133 -1.4566 15 6 2.1388 -1.1672 -0.0005 16 8 3.3516 -1.1672 -0.0001 17 6 1.3854 -2.4723 -0.0005 18 16 2.5616 -3.8480 -0.0005 19 6 1.4415 -5.2083 0.0003 20 1 0.3762 -5.0305 0.0001 21 6 1.9282 -6.5080 -0.0001 22 7 3.2266 -6.7247 -0.0004 23 14 0.7407 -7.9501 0.0015 24 1 -0.6548 -7.4421 0.0023 25 1 0.9652 -8.7774 -1.2111 26 1 0.9676 -8.7770 1.2138 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 3.1498 1.1384 0.5138 31 1 1.6084 2.0284 0.5138 32 1 1.5000 1.8406 -1.9564 33 1 3.0415 0.9507 -1.9563 34 1 3.4284 3.3986 -0.6026 35 1 4.3358 4.9787 -4.7572 36 1 5.5819 7.1279 -4.7284 37 1 5.4987 6.9850 -0.4543 38 1 0.7590 -2.5302 0.8897 39 1 0.7583 -2.5299 -0.8902 40 1 3.5667 -7.6330 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688320314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:48 Heat of formation + Delta-G solvation = -99.134227 kcal Electronic energy + Delta-G solvation = -25262.650871 eV Core-core repulsion = 21117.590296 eV Total energy + Delta-G solvation = -4145.060575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.14266 -41.75446 -40.92219 -39.99336 -37.21067 -35.77514 -34.58436 -33.74315 -32.59823 -31.66058 -29.58765 -27.69752 -27.46809 -25.79004 -25.00583 -23.88900 -22.09088 -20.74515 -19.65742 -19.33547 -18.66518 -18.48918 -18.08712 -17.42606 -17.03446 -16.88763 -16.81394 -16.65583 -16.50804 -16.05267 -15.72331 -15.26251 -15.17538 -14.95990 -14.54715 -14.47264 -14.33352 -14.20811 -14.12882 -13.68674 -13.57149 -13.23536 -13.14794 -13.06938 -12.90979 -12.62645 -12.36912 -11.70208 -11.62822 -11.15821 -11.15203 -10.96693 -10.85219 -10.39935 -10.26160 -10.08617 -9.80798 -8.67356 -8.34736 -6.13031 -0.70390 -0.06506 1.23540 1.41681 1.42678 1.46219 1.52084 1.57292 1.78806 2.25603 2.29703 2.56896 2.77224 2.99364 2.99628 3.26542 3.54943 3.65469 3.68790 3.72296 3.81150 4.01690 4.08182 4.21742 4.29665 4.41251 4.49758 4.57081 4.68187 4.70119 4.72531 4.76583 4.87656 4.98013 5.16102 5.37029 5.42253 5.52451 6.18480 6.19363 6.21516 6.52123 6.97969 7.06683 7.10660 8.74794 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.028194 B = 0.001678 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.886018 B =16683.914489 C =16923.760326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.608 5.608 3 C 0.112 3.888 4 C 0.110 3.890 5 N -0.694 5.694 6 C 0.568 3.432 7 O -0.567 6.567 8 C 0.050 3.950 9 C -0.084 4.084 10 C -0.105 4.105 11 C 0.074 3.926 12 F -0.122 7.122 13 C 0.078 3.922 14 N -0.441 5.441 15 C 0.530 3.470 16 O -0.561 6.561 17 C -0.124 4.124 18 S -0.156 6.156 19 C -0.544 4.544 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.255 1.255 25 H -0.275 1.275 26 H -0.274 1.274 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.422 0.578 35 H 0.162 0.838 36 H 0.184 0.816 37 H 0.204 0.796 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.496 32.223 -2.468 32.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.342 5.342 3 C -0.012 4.012 4 C -0.015 4.015 5 N -0.346 5.346 6 C 0.354 3.646 7 O -0.446 6.446 8 C -0.088 4.088 9 C -0.105 4.105 10 C -0.131 4.131 11 C 0.052 3.948 12 F -0.101 7.101 13 C -0.084 4.084 14 N -0.152 5.152 15 C 0.318 3.682 16 O -0.439 6.439 17 C -0.275 4.275 18 S 0.071 5.929 19 C -0.692 4.692 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.179 1.179 25 H -0.201 1.201 26 H -0.199 1.199 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.148 0.852 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.260 0.740 35 H 0.179 0.821 36 H 0.202 0.798 37 H 0.220 0.780 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.078 31.307 -2.415 31.468 hybrid contribution -1.020 -0.404 -0.562 1.233 sum -3.098 30.902 -2.976 31.199 Atomic orbital electron populations 1.22186 0.76323 1.05349 1.03420 1.47709 1.08711 1.04202 1.73601 1.21620 0.99203 0.85510 0.94820 1.21656 0.96642 0.84448 0.98736 1.45551 1.56564 1.23236 1.09280 1.18086 0.78802 0.83917 0.83818 1.90809 1.56143 1.65160 1.32455 1.20994 1.01137 0.95931 0.90696 1.22156 0.94566 0.94187 0.99552 1.21979 0.97042 0.95095 0.99024 1.19156 0.95600 0.84042 0.96033 1.91575 1.76919 1.44390 1.97194 1.23401 0.95046 0.90622 0.99295 1.67559 1.09830 1.09734 1.28038 1.20211 0.87308 0.85616 0.75087 1.90693 1.15684 1.87458 1.50095 1.23384 1.02713 0.94837 1.06566 1.85611 1.12780 0.97459 1.97033 1.23232 0.94653 0.92582 1.58712 0.89784 1.26144 0.97598 1.01740 0.93751 1.70197 1.14142 1.22401 1.48117 0.84893 0.78227 0.76716 0.78032 1.17870 1.20077 1.19888 0.91431 0.90377 0.87341 0.90626 0.85239 0.90156 0.94426 0.73961 0.82074 0.79840 0.77974 0.86963 0.87525 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 10.28 127.77 1.31 2.38 16 2 N -0.61 -15.02 2.87 -846.76 -2.43 -17.45 16 3 C 0.11 2.23 5.57 86.38 0.48 2.71 16 4 C 0.11 2.53 6.00 86.38 0.52 3.05 16 5 N -0.69 -14.02 5.54 -465.78 -2.58 -16.61 16 6 C 0.57 13.45 7.81 86.85 0.68 14.13 16 7 O -0.57 -17.45 16.32 -3.80 -0.06 -17.51 16 8 C 0.05 0.90 6.75 41.88 0.28 1.18 16 9 C -0.08 -1.18 9.63 22.60 0.22 -0.96 16 10 C -0.11 -0.98 10.15 22.48 0.23 -0.75 16 11 C 0.07 0.74 7.36 22.58 0.17 0.90 16 12 F -0.12 -1.27 17.28 44.97 0.78 -0.49 16 13 C 0.08 0.81 11.17 84.90 0.95 1.76 16 14 N -0.44 -6.66 9.53 -184.74 -1.76 -8.42 16 15 C 0.53 19.64 7.69 87.66 0.67 20.32 16 16 O -0.56 -26.09 15.44 -3.03 -0.05 -26.14 16 17 C -0.12 -4.92 4.71 71.24 0.34 -4.58 16 18 S -0.16 -8.74 20.57 -56.49 -1.16 -9.90 16 19 C -0.54 -31.13 9.50 67.95 0.65 -30.49 16 20 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.70 5.49 84.85 0.47 1.17 16 22 N -0.91 -56.42 13.22 21.65 0.29 -56.13 16 23 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 24 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 25 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.26 6.44 -2.39 -0.02 1.25 16 29 H 0.11 0.92 7.89 -2.39 -0.02 0.90 16 30 H 0.08 1.82 7.42 -2.39 -0.02 1.80 16 31 H 0.13 1.41 7.89 -2.39 -0.02 1.39 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.42 6.52 7.80 -92.71 -0.72 5.80 16 35 H 0.16 2.19 7.64 -2.91 -0.02 2.17 16 36 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 37 H 0.20 0.85 8.06 -2.91 -0.02 0.82 16 38 H 0.11 3.95 7.40 -2.39 -0.02 3.93 16 39 H 0.11 3.87 8.11 -2.40 -0.02 3.85 16 40 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -84.54 371.02 2.37 -82.18 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.37 Total: 13.93 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 6.96 Total: 10.82 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -6.49 Total: -98.61 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.11 Total: -43.65 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.78 Total: -0.49 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.90 kcal Total: -84.54 2.37 -82.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688320314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.957 kcal (2) G-P(sol) polarization free energy of solvation -84.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds