Wall clock time and date at job start Sat Apr 11 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.79663 * 2 1 4 4 C 1.55207 * 110.82240 * 123.40053 * 2 1 3 5 5 N 1.48110 * 103.27062 * 155.70058 * 4 2 1 6 6 C 1.34772 * 127.03673 * 140.71110 * 5 4 2 7 7 O 1.21278 * 120.00496 * 179.97438 * 6 5 4 8 8 C 1.50705 * 119.99951 * 359.97037 * 6 5 4 9 9 S 1.81001 * 109.47236 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99626 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00236 * 359.97438 * 10 9 8 12 12 C 1.38799 * 119.99634 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00109 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99992 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47175 * 89.99837 * 14 12 10 16 16 H 1.48497 * 109.47159 * 210.00048 * 14 12 10 17 17 H 1.48505 * 109.47236 * 330.00061 * 14 12 10 18 18 C 1.47489 * 105.93310 * 320.68640 * 5 4 2 19 19 C 1.54009 * 107.08477 * 25.44369 * 18 5 4 20 20 H 1.08998 * 110.32634 * 117.68628 * 19 18 5 21 21 N 1.46896 * 110.32719 * 239.80729 * 19 18 5 22 22 C 1.46905 * 110.99596 * 272.15964 * 21 19 18 23 23 C 1.50695 * 109.47097 * 179.97438 * 22 21 19 24 24 C 1.33643 * 122.74824 * 95.00150 * 23 22 21 25 25 S 1.76199 * 107.92569 * 179.97438 * 24 23 22 26 26 C 1.70974 * 90.28083 * 0.02562 * 25 24 23 27 27 N 1.29023 * 110.17232 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.46750 * 183.28866 * 1 2 3 29 29 H 1.08995 * 109.46934 * 303.28394 * 1 2 3 30 30 H 1.08996 * 109.47417 * 63.29357 * 1 2 3 31 31 H 1.09003 * 110.67500 * 37.24357 * 4 2 1 32 32 H 1.09005 * 110.63386 * 274.14346 * 4 2 1 33 33 H 1.09003 * 109.46684 * 299.99808 * 8 6 5 34 34 H 1.09005 * 109.47301 * 59.98841 * 8 6 5 35 35 H 0.96998 * 119.99888 * 180.02562 * 13 12 10 36 36 H 1.08997 * 109.91126 * 266.08455 * 18 5 4 37 37 H 1.09001 * 109.91454 * 144.79942 * 18 5 4 38 38 H 1.00900 * 111.00181 * 148.21039 * 21 19 18 39 39 H 1.09005 * 109.46915 * 60.00355 * 22 21 19 40 40 H 1.08995 * 109.47284 * 300.00478 * 22 21 19 41 41 H 1.08007 * 126.03527 * 0.24051 * 24 23 22 42 42 H 1.08005 * 124.91546 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0817 -0.7986 1.2111 5 7 3.4306 -1.2117 0.7600 6 6 4.5572 -1.2503 1.4987 7 8 5.5999 -1.6123 0.9961 8 6 4.5214 -0.8434 2.9493 9 16 6.1774 -1.0037 3.6620 10 6 5.8523 -0.4788 5.3123 11 1 4.8534 -0.1844 5.5985 12 6 6.8801 -0.4438 6.2445 13 7 8.0976 -0.8022 5.8956 14 14 6.5356 0.1132 7.9939 15 1 6.1587 -1.0604 8.8220 16 1 7.7529 0.7481 8.5600 17 1 5.4214 1.0950 7.9905 18 6 3.2887 -1.5727 -0.6630 19 6 2.0775 -0.7936 -1.2089 20 1 2.3910 -0.1114 -1.9990 21 7 1.0579 -1.7232 -1.7130 22 6 1.3042 -2.0613 -3.1213 23 6 0.2411 -3.0149 -3.6022 24 6 -0.8603 -2.6077 -4.2404 25 16 -1.8244 -4.0324 -4.6213 26 6 -0.6512 -5.0339 -3.8839 27 7 0.3207 -4.3187 -3.4272 28 1 -0.3633 -1.0260 0.0590 29 1 -0.3633 0.5640 0.8591 30 1 -0.3634 0.4618 -0.9180 31 1 1.4597 -1.6708 1.4126 32 1 2.1494 -0.1613 2.0928 33 1 4.1901 0.1921 3.0281 34 1 3.8291 -1.4884 3.4906 35 1 8.8157 -0.7781 6.5472 36 1 3.1144 -2.6444 -0.7584 37 1 4.1886 -1.2902 -1.2093 38 1 0.1307 -1.3451 -1.5888 39 1 2.2832 -2.5313 -3.2162 40 1 1.2773 -1.1530 -3.7231 41 1 -1.1125 -1.5861 -4.4838 42 1 -0.7144 -6.1097 -3.8110 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700255178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:05 Heat of formation + Delta-G solvation = 28.263030 kcal Electronic energy + Delta-G solvation = -24123.491553 eV Core-core repulsion = 20550.168513 eV Total energy + Delta-G solvation = -3573.323040 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.42071 -39.84582 -37.92635 -35.10237 -32.67651 -32.39930 -31.07139 -29.95233 -27.88909 -26.54081 -26.20827 -25.44064 -24.50481 -22.83828 -20.09628 -19.78393 -19.23778 -18.58818 -17.64564 -16.84919 -16.23378 -16.18254 -15.96366 -15.17874 -15.05595 -14.82376 -14.77313 -14.10455 -13.88647 -13.75185 -13.61268 -13.47724 -13.45340 -12.87760 -12.54267 -12.47732 -12.25662 -12.05683 -11.76666 -11.70002 -11.33200 -11.05240 -11.03695 -10.99112 -10.93030 -10.73579 -10.02127 -9.89120 -9.78675 -9.35624 -9.34576 -9.03981 -8.80557 -8.44769 -8.19269 -6.46660 -6.18748 -3.89069 0.28355 0.96799 1.30054 2.34887 2.96176 3.13643 3.24267 3.28117 3.32287 3.64341 3.75436 3.98153 4.17246 4.23412 4.39061 4.59892 4.64515 4.73760 4.82237 5.05119 5.09652 5.14897 5.16169 5.16861 5.24468 5.30349 5.38491 5.50065 5.58401 5.68355 5.68469 5.75535 5.78266 5.91781 5.95228 6.04408 6.17881 6.43752 6.64362 6.98973 7.36571 7.62216 7.79938 8.38039 8.64014 9.26315 10.88681 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.026560 B = 0.001882 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.967720 B =14873.585535 C =15181.056180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 H 0.088 0.912 4 C 0.110 3.890 5 N -0.627 5.627 6 C 0.552 3.448 7 O -0.517 6.517 8 C -0.146 4.146 9 S -0.061 6.061 10 C -0.534 4.534 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.117 3.883 19 C 0.078 3.922 20 H 0.062 0.938 21 N -0.676 5.676 22 C 0.130 3.870 23 C 0.075 3.925 24 C -0.255 4.255 25 S 0.112 5.888 26 C 0.025 3.975 27 N -0.451 5.451 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.268 0.732 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.347 0.653 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.176 0.824 42 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.826 -1.372 -22.125 33.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.127 4.127 3 H 0.107 0.893 4 C -0.013 4.013 5 N -0.364 5.364 6 C 0.340 3.660 7 O -0.391 6.391 8 C -0.296 4.296 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.007 4.007 19 C -0.033 4.033 20 H 0.079 0.921 21 N -0.312 5.312 22 C -0.002 4.002 23 C -0.058 4.058 24 C -0.395 4.395 25 S 0.364 5.636 26 C -0.274 4.274 27 N -0.164 5.164 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.171 0.829 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.193 0.807 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -23.165 -2.982 -22.739 32.597 hybrid contribution -1.187 2.037 1.506 2.798 sum -24.352 -0.945 -21.233 32.323 Atomic orbital electron populations 1.21737 0.94098 1.02770 1.02115 1.22485 0.96091 0.99420 0.94721 0.89336 1.22569 0.83441 0.98459 0.96862 1.48729 1.08368 1.68235 1.11025 1.19978 0.81521 0.76864 0.87612 1.90707 1.29532 1.46182 1.72707 1.23499 1.08132 1.03966 0.94028 1.85410 1.01887 1.87469 1.08634 1.22861 0.98098 1.51592 0.95701 0.90950 1.24995 0.94439 0.94959 0.99238 1.70022 1.00322 1.44860 1.35066 0.86168 0.77930 0.78808 0.82583 1.20271 1.20770 1.19714 1.21996 0.96642 0.99990 0.82050 1.22400 0.92380 0.92158 0.96356 0.92054 1.60576 1.06389 1.47016 1.17203 1.20495 0.96681 0.94564 0.88411 1.20218 0.96193 0.90284 0.99136 1.26911 0.99305 1.03613 1.09664 1.84089 1.25887 0.98749 1.54868 1.28508 0.93098 1.05050 1.00702 1.66130 1.26352 1.05213 1.18666 0.91033 0.91555 0.92524 0.90610 0.89997 0.89380 0.89323 0.92206 0.90462 0.90894 0.82932 0.88870 0.93262 0.80686 0.78332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 7.92 37.16 0.29 -0.62 16 2 C -0.11 -0.92 3.65 -88.60 -0.32 -1.24 16 3 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.11 1.26 6.40 -1.99 -0.01 1.24 16 5 N -0.63 -9.65 3.29 -169.59 -0.56 -10.20 16 6 C 0.55 11.20 7.91 -10.99 -0.09 11.12 16 7 O -0.52 -12.57 16.20 5.56 0.09 -12.48 16 8 C -0.15 -3.10 5.09 36.01 0.18 -2.91 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 11 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.48 13.22 55.49 0.73 -25.75 16 14 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 C 0.12 1.54 6.72 -2.97 -0.02 1.52 16 19 C 0.08 0.71 3.24 -66.33 -0.21 0.49 16 20 H 0.06 0.51 7.84 -51.93 -0.41 0.10 16 21 N -0.68 -5.64 5.93 -106.53 -0.63 -6.27 16 22 C 0.13 1.03 5.97 -4.98 -0.03 1.00 16 23 C 0.07 0.63 6.25 -84.22 -0.53 0.10 16 24 C -0.25 -1.59 11.11 29.12 0.32 -1.27 16 25 S 0.11 0.60 23.22 -107.50 -2.50 -1.89 16 26 C 0.03 0.18 12.23 51.58 0.63 0.81 16 27 N -0.45 -4.48 10.53 -11.90 -0.13 -4.60 16 28 H 0.07 0.47 6.90 -51.93 -0.36 0.11 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.28 7.82 -51.93 -0.41 -0.13 16 31 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 32 H 0.08 0.91 7.24 -51.93 -0.38 0.54 16 33 H 0.09 1.72 7.91 -51.92 -0.41 1.31 16 34 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 35 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.08 1.10 7.93 -51.93 -0.41 0.69 16 37 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 38 H 0.35 2.42 5.39 -39.29 -0.21 2.21 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.30 8.03 -51.93 -0.42 -0.12 16 41 H 0.18 0.68 8.06 -52.48 -0.42 0.26 16 42 H 0.20 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -36.33 375.25 -10.07 -46.39 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.91 Total: -0.64 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 0.42 Total: -2.91 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.58 Total: -46.83 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -4.71 Total: -5.80 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.33 -10.07 -46.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.657 kcal (2) G-P(sol) polarization free energy of solvation -36.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds