Wall clock time and date at job start Sat Apr 11 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.79663 * 2 1 4 4 C 1.55207 * 110.82240 * 123.40053 * 2 1 3 5 5 N 1.48110 * 103.27062 * 155.70058 * 4 2 1 6 6 C 1.34772 * 127.03673 * 140.71110 * 5 4 2 7 7 O 1.21278 * 120.00496 * 179.97438 * 6 5 4 8 8 C 1.50705 * 119.99951 * 359.97037 * 6 5 4 9 9 S 1.81001 * 109.47236 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99626 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00236 * 359.97438 * 10 9 8 12 12 C 1.38799 * 119.99634 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00109 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99992 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47175 * 89.99837 * 14 12 10 16 16 H 1.48497 * 109.47159 * 210.00048 * 14 12 10 17 17 H 1.48505 * 109.47236 * 330.00061 * 14 12 10 18 18 C 1.47489 * 105.93310 * 320.68640 * 5 4 2 19 19 C 1.54009 * 107.08477 * 25.44369 * 18 5 4 20 20 H 1.08998 * 110.32634 * 117.68628 * 19 18 5 21 21 N 1.46896 * 110.32719 * 239.80729 * 19 18 5 22 22 C 1.46905 * 110.99596 * 272.15964 * 21 19 18 23 23 C 1.50695 * 109.47097 * 179.97438 * 22 21 19 24 24 C 1.33643 * 122.74824 * 95.00150 * 23 22 21 25 25 S 1.76199 * 107.92569 * 179.97438 * 24 23 22 26 26 C 1.70974 * 90.28083 * 0.02562 * 25 24 23 27 27 N 1.29023 * 110.17232 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.46750 * 183.28866 * 1 2 3 29 29 H 1.08995 * 109.46934 * 303.28394 * 1 2 3 30 30 H 1.08996 * 109.47417 * 63.29357 * 1 2 3 31 31 H 1.09003 * 110.67500 * 37.24357 * 4 2 1 32 32 H 1.09005 * 110.63386 * 274.14346 * 4 2 1 33 33 H 1.09003 * 109.46684 * 299.99808 * 8 6 5 34 34 H 1.09005 * 109.47301 * 59.98841 * 8 6 5 35 35 H 0.96998 * 119.99888 * 180.02562 * 13 12 10 36 36 H 1.08997 * 109.91126 * 266.08455 * 18 5 4 37 37 H 1.09001 * 109.91454 * 144.79942 * 18 5 4 38 38 H 1.00900 * 111.00181 * 148.21039 * 21 19 18 39 39 H 1.09005 * 109.46915 * 60.00355 * 22 21 19 40 40 H 1.08995 * 109.47284 * 300.00478 * 22 21 19 41 41 H 1.08007 * 126.03527 * 0.24051 * 24 23 22 42 42 H 1.08005 * 124.91546 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0817 -0.7986 1.2111 5 7 3.4306 -1.2117 0.7600 6 6 4.5572 -1.2503 1.4987 7 8 5.5999 -1.6123 0.9961 8 6 4.5214 -0.8434 2.9493 9 16 6.1774 -1.0037 3.6620 10 6 5.8523 -0.4788 5.3123 11 1 4.8534 -0.1844 5.5985 12 6 6.8801 -0.4438 6.2445 13 7 8.0976 -0.8022 5.8956 14 14 6.5356 0.1132 7.9939 15 1 6.1587 -1.0604 8.8220 16 1 7.7529 0.7481 8.5600 17 1 5.4214 1.0950 7.9905 18 6 3.2887 -1.5727 -0.6630 19 6 2.0775 -0.7936 -1.2089 20 1 2.3910 -0.1114 -1.9990 21 7 1.0579 -1.7232 -1.7130 22 6 1.3042 -2.0613 -3.1213 23 6 0.2411 -3.0149 -3.6022 24 6 -0.8603 -2.6077 -4.2404 25 16 -1.8244 -4.0324 -4.6213 26 6 -0.6512 -5.0339 -3.8839 27 7 0.3207 -4.3187 -3.4272 28 1 -0.3633 -1.0260 0.0590 29 1 -0.3633 0.5640 0.8591 30 1 -0.3634 0.4618 -0.9180 31 1 1.4597 -1.6708 1.4126 32 1 2.1494 -0.1613 2.0928 33 1 4.1901 0.1921 3.0281 34 1 3.8291 -1.4884 3.4906 35 1 8.8157 -0.7781 6.5472 36 1 3.1144 -2.6444 -0.7584 37 1 4.1886 -1.2902 -1.2093 38 1 0.1307 -1.3451 -1.5888 39 1 2.2832 -2.5313 -3.2162 40 1 1.2773 -1.1530 -3.7231 41 1 -1.1125 -1.5861 -4.4838 42 1 -0.7144 -6.1097 -3.8110 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700255178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:04 Heat of formation + Delta-G solvation = 1.974518 kcal Electronic energy + Delta-G solvation = -24124.631508 eV Core-core repulsion = 20550.168513 eV Total energy + Delta-G solvation = -3574.462995 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28628 -40.69837 -39.20235 -36.04617 -34.59329 -33.54869 -31.88869 -31.17775 -28.95483 -27.69272 -27.35485 -26.85286 -25.12234 -23.81126 -20.96785 -20.50451 -20.38895 -19.64010 -19.07677 -18.14369 -17.32355 -16.89220 -16.77827 -16.72619 -16.51129 -16.31274 -15.69563 -15.44235 -15.04352 -14.73554 -14.46228 -14.37176 -14.18523 -13.99682 -13.76155 -13.55202 -13.24088 -13.09820 -13.02272 -12.90321 -12.86121 -12.61491 -12.36587 -12.09547 -11.75700 -11.74222 -11.60320 -11.14806 -10.98984 -10.53499 -10.37903 -10.29465 -9.83637 -9.76901 -9.42573 -8.69317 -8.34983 -6.14221 -0.18552 0.54026 0.82814 1.22335 1.42727 1.44102 1.54079 1.55934 1.79924 2.06966 2.26684 2.98950 3.17406 3.23591 3.38592 3.43419 3.54054 3.85296 3.98214 4.12359 4.19817 4.22891 4.33037 4.40860 4.43986 4.45141 4.53610 4.55193 4.59307 4.72443 4.77633 4.82890 4.89887 5.03602 5.17350 5.20608 5.22682 5.41002 5.44878 5.94965 6.19323 6.37814 6.47606 6.88040 7.05668 7.09247 8.74412 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.026560 B = 0.001882 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.967720 B =14873.585535 C =15181.056180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.095 0.905 4 C 0.100 3.900 5 N -0.618 5.618 6 C 0.548 3.452 7 O -0.570 6.570 8 C -0.117 4.117 9 S -0.152 6.152 10 C -0.545 4.545 11 H 0.084 0.916 12 C 0.012 3.988 13 N -0.912 5.912 14 Si 1.001 2.999 15 H -0.268 1.268 16 H -0.277 1.277 17 H -0.256 1.256 18 C 0.114 3.886 19 C 0.091 3.909 20 H 0.078 0.922 21 N -0.681 5.681 22 C 0.132 3.868 23 C 0.050 3.950 24 C -0.250 4.250 25 S 0.157 5.843 26 C 0.009 3.991 27 N -0.497 5.497 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.271 0.729 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.359 0.641 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.201 0.799 42 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.704 0.176 -22.279 36.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.113 0.887 4 C -0.022 4.022 5 N -0.353 5.353 6 C 0.336 3.664 7 O -0.449 6.449 8 C -0.268 4.268 9 S 0.075 5.925 10 C -0.693 4.693 11 H 0.102 0.898 12 C -0.193 4.193 13 N -0.548 5.548 14 Si 0.823 3.177 15 H -0.193 1.193 16 H -0.202 1.202 17 H -0.180 1.180 18 C -0.010 4.010 19 C -0.020 4.020 20 H 0.096 0.904 21 N -0.319 5.319 22 C 0.001 3.999 23 C -0.083 4.083 24 C -0.391 4.391 25 S 0.410 5.590 26 C -0.288 4.288 27 N -0.212 5.212 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.184 0.816 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.218 0.782 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -27.132 -1.430 -22.925 35.549 hybrid contribution -0.126 1.480 1.394 2.037 sum -27.258 0.050 -21.532 34.736 Atomic orbital electron populations 1.21707 0.91649 1.03039 1.03652 1.22470 0.97916 0.98849 0.92362 0.88703 1.22939 0.81176 0.99424 0.98659 1.48685 1.08586 1.66209 1.11790 1.19793 0.82191 0.76902 0.87489 1.90681 1.31822 1.48939 1.73482 1.23282 1.03467 1.05605 0.94490 1.85619 1.08475 1.88030 1.10345 1.23188 0.98799 1.51695 0.95621 0.89830 1.26173 0.93980 0.94670 1.04454 1.70192 1.01587 1.46088 1.36924 0.84919 0.78263 0.78718 0.75850 1.19306 1.20226 1.18025 1.22152 0.98241 0.99883 0.80684 1.22217 0.90996 0.91746 0.97017 0.90389 1.60424 1.06679 1.46965 1.17880 1.20457 0.95651 0.95340 0.88433 1.20281 0.97251 0.90025 1.00719 1.27236 0.98522 1.05188 1.08108 1.83925 1.24265 0.97474 1.53371 1.28865 0.93240 1.06189 1.00549 1.66128 1.28161 1.06376 1.20497 0.91295 0.90700 0.90428 0.89857 0.89335 0.87286 0.87765 0.91965 0.91926 0.92463 0.81564 0.91230 0.90915 0.78202 0.76613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 7.92 71.98 0.57 -0.64 16 2 C -0.10 -1.38 3.65 -9.48 -0.03 -1.41 16 3 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 4 C 0.10 2.09 6.40 86.83 0.56 2.65 16 5 N -0.62 -18.96 3.29 -808.86 -2.66 -21.62 16 6 C 0.55 22.79 7.91 87.66 0.69 23.48 16 7 O -0.57 -29.19 16.20 -3.02 -0.05 -29.23 16 8 C -0.12 -5.01 5.09 71.24 0.36 -4.65 16 9 S -0.15 -8.77 20.57 -56.49 -1.16 -9.94 16 10 C -0.55 -31.78 9.50 67.95 0.65 -31.14 16 11 H 0.08 4.51 7.80 -2.91 -0.02 4.48 16 12 C 0.01 0.69 5.49 84.86 0.47 1.15 16 13 N -0.91 -56.95 13.22 21.65 0.29 -56.66 16 14 Si 1.00 44.10 29.55 68.60 2.03 46.13 16 15 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 18 C 0.11 3.03 6.72 86.53 0.58 3.61 16 19 C 0.09 1.51 3.24 45.81 0.15 1.65 16 20 H 0.08 1.09 7.84 -2.39 -0.02 1.07 16 21 N -0.68 -10.17 5.93 -490.96 -2.91 -13.08 16 22 C 0.13 1.95 5.97 85.55 0.51 2.46 16 23 C 0.05 0.77 6.25 41.52 0.26 1.03 16 24 C -0.25 -2.50 11.11 66.78 0.74 -1.75 16 25 S 0.16 1.34 23.22 -56.49 -1.31 0.03 16 26 C 0.01 0.12 12.23 130.66 1.60 1.72 16 27 N -0.50 -9.73 10.53 -191.55 -2.02 -11.75 16 28 H 0.07 0.66 6.90 -2.39 -0.02 0.64 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.39 7.82 -2.39 -0.02 0.37 16 31 H 0.08 1.67 8.03 -2.39 -0.02 1.65 16 32 H 0.09 1.76 7.24 -2.38 -0.02 1.74 16 33 H 0.11 4.16 7.91 -2.39 -0.02 4.14 16 34 H 0.10 4.09 8.14 -2.39 -0.02 4.07 16 35 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 36 H 0.06 1.86 7.93 -2.39 -0.02 1.84 16 37 H 0.06 1.69 8.05 -2.39 -0.02 1.68 16 38 H 0.36 3.94 5.39 -89.69 -0.48 3.45 16 39 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.07 0.70 8.03 -2.39 -0.02 0.68 16 41 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 42 H 0.22 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -83.16 375.25 -0.15 -83.31 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.55 Total: 14.65 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 7.10 Total: -1.83 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -7.30 Total: -103.11 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.05 Total: -29.23 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -7.44 SS G_CDS: -2.47 Total: -9.91 kcal Total: -83.16 -0.15 -83.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.287 kcal (2) G-P(sol) polarization free energy of solvation -83.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds