Wall clock time and date at job start Sat Apr 11 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.28986 * 2 1 4 4 C 1.54001 * 110.32967 * 122.13901 * 2 1 3 5 5 N 1.47492 * 107.08521 * 117.58598 * 4 2 1 6 6 C 1.34776 * 127.03328 * 205.48297 * 5 4 2 7 7 O 1.21275 * 120.00035 * 179.97438 * 6 5 4 8 8 C 1.50694 * 119.99962 * 359.97438 * 6 5 4 9 9 S 1.81002 * 109.47090 * 179.97438 * 8 6 5 10 10 C 1.76198 * 100.00188 * 179.97438 * 9 8 6 11 11 H 1.08009 * 120.00093 * 0.02562 * 10 9 8 12 12 C 1.38792 * 120.00296 * 179.97438 * 10 9 8 13 13 N 1.31637 * 119.99882 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00286 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46775 * 90.00090 * 14 12 10 16 16 H 1.48495 * 109.47320 * 210.00033 * 14 12 10 17 17 H 1.48494 * 109.47229 * 330.00254 * 14 12 10 18 18 C 1.48119 * 105.93147 * 25.44851 * 5 4 2 19 19 C 1.54621 * 110.32585 * 237.76194 * 2 1 3 20 20 H 1.08990 * 110.73922 * 337.59379 * 19 2 1 21 21 N 1.46901 * 110.73978 * 100.92392 * 19 2 1 22 22 C 1.46908 * 110.99653 * 205.00091 * 21 19 2 23 23 C 1.50702 * 109.46600 * 179.97438 * 22 21 19 24 24 C 1.33638 * 122.74626 * 94.73534 * 23 22 21 25 25 S 1.76203 * 107.91944 * 179.97438 * 24 23 22 26 26 C 1.70976 * 90.28217 * 0.27415 * 25 24 23 27 27 N 1.29024 * 110.17072 * 359.83636 * 26 25 24 28 28 H 1.09002 * 109.47153 * 299.31350 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.31541 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.31522 * 1 2 3 31 31 H 1.09003 * 109.91422 * 236.94489 * 4 2 1 32 32 H 1.08997 * 109.91050 * 358.03278 * 4 2 1 33 33 H 1.09004 * 109.47709 * 299.99895 * 8 6 5 34 34 H 1.09000 * 109.47271 * 59.99937 * 8 6 5 35 35 H 0.97000 * 120.00026 * 179.97438 * 13 12 10 36 36 H 1.08999 * 110.66058 * 79.14725 * 18 5 4 37 37 H 1.08999 * 110.65908 * 202.10089 * 18 5 4 38 38 H 1.00902 * 110.99894 * 328.94875 * 21 19 2 39 39 H 1.08998 * 109.46515 * 299.99355 * 22 21 19 40 40 H 1.08997 * 109.47092 * 59.99988 * 22 21 19 41 41 H 1.07992 * 126.04186 * 0.02832 * 24 23 22 42 42 H 1.08009 * 124.91198 * 179.83990 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0650 -0.7682 1.2228 5 7 2.8277 -1.9218 0.7101 6 6 3.0614 -3.0874 1.3451 7 8 3.7092 -3.9557 0.7999 8 6 2.5179 -3.3117 2.7326 9 16 2.9966 -4.9593 3.3091 10 6 2.2521 -4.9530 4.9060 11 1 1.7026 -4.0861 5.2423 12 6 2.3708 -6.0625 5.7314 13 7 3.0401 -7.1193 5.3214 14 14 1.5808 -6.0562 7.4242 15 1 0.1971 -6.5864 7.3266 16 1 2.3744 -6.9101 8.3440 17 1 1.5428 -4.6670 7.9475 18 6 3.2836 -1.5375 -0.6458 19 6 2.0671 -0.7735 -1.2264 20 1 1.3175 -1.4697 -1.6021 21 7 2.4919 0.1555 -2.2821 22 6 2.4360 -0.4867 -3.6022 23 6 2.8772 0.4948 -4.6573 24 6 4.1343 0.5571 -5.1062 25 16 4.2134 1.8298 -6.3222 26 6 2.5500 2.1571 -6.1000 27 7 2.0563 1.3662 -5.2081 28 1 -0.3633 0.5031 0.8961 29 1 -0.3633 -1.0276 -0.0123 30 1 -0.3634 0.5244 -0.8838 31 1 2.7182 -0.1228 1.8101 32 1 1.2336 -1.1129 1.8375 33 1 2.9231 -2.5581 3.4079 34 1 1.4307 -3.2355 2.7136 35 1 3.1233 -7.8945 5.8984 36 1 4.1553 -0.8857 -0.5881 37 1 3.5055 -2.4225 -1.2422 38 1 1.9377 0.9986 -2.2664 39 1 3.0968 -1.3534 -3.6127 40 1 1.4143 -0.8059 -3.8079 41 1 4.9564 -0.0637 -4.7818 42 1 1.9932 2.9160 -6.6297 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700255179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:06 Heat of formation + Delta-G solvation = 18.071363 kcal Electronic energy + Delta-G solvation = -23981.737968 eV Core-core repulsion = 20407.972984 eV Total energy + Delta-G solvation = -3573.764984 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37264 -39.86291 -37.83202 -35.22706 -32.66058 -32.41865 -31.16890 -29.95598 -27.91902 -26.47770 -26.11558 -25.44244 -24.66187 -22.27318 -20.61432 -19.91522 -19.35848 -18.42484 -17.69934 -16.71216 -16.42941 -16.33247 -15.38299 -15.22071 -15.05983 -14.79682 -14.44082 -14.39212 -13.90126 -13.83325 -13.65146 -13.50750 -13.33264 -12.96093 -12.81799 -12.53576 -12.20427 -12.05681 -11.77298 -11.73456 -11.27931 -11.20376 -11.05849 -11.01343 -10.82341 -10.75795 -10.11389 -9.86909 -9.80967 -9.39656 -9.35181 -9.05981 -8.87459 -8.47610 -8.22361 -6.49342 -6.20892 -3.91475 0.31652 0.98232 1.31796 2.31092 2.90371 3.08052 3.22709 3.26178 3.30717 3.59358 3.73241 4.02187 4.19023 4.22213 4.42665 4.62136 4.65900 4.74154 4.93210 5.02312 5.12564 5.13924 5.14244 5.19346 5.23263 5.38567 5.41730 5.54188 5.61804 5.67378 5.70955 5.77144 5.79979 5.85794 5.92203 5.98481 6.15120 6.33242 6.67374 6.94677 7.29440 7.60196 7.73536 8.35939 8.57861 9.24304 10.86539 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.030587 B = 0.001839 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.191863 B =15223.368488 C =15879.529727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 H 0.092 0.908 4 C 0.108 3.892 5 N -0.628 5.628 6 C 0.553 3.447 7 O -0.516 6.516 8 C -0.146 4.146 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.118 3.882 19 C 0.075 3.925 20 H 0.065 0.935 21 N -0.672 5.672 22 C 0.133 3.867 23 C 0.063 3.937 24 C -0.229 4.229 25 S 0.117 5.883 26 C 0.019 3.981 27 N -0.467 5.467 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.268 0.732 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.348 0.652 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.180 0.820 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 22.336 -22.000 31.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 H 0.111 0.889 4 C -0.016 4.016 5 N -0.366 5.366 6 C 0.342 3.658 7 O -0.390 6.390 8 C -0.297 4.297 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.006 4.006 19 C -0.035 4.035 20 H 0.083 0.917 21 N -0.304 5.304 22 C 0.002 3.998 23 C -0.069 4.069 24 C -0.369 4.369 25 S 0.369 5.631 26 C -0.280 4.280 27 N -0.181 5.181 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.168 0.832 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.198 0.802 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -0.324 21.104 -23.131 31.313 hybrid contribution -2.489 0.588 2.131 3.329 sum -2.813 21.692 -21.000 30.323 Atomic orbital electron populations 1.21902 0.93933 1.02497 1.02115 1.22264 0.96337 0.99951 0.94068 0.88947 1.22099 0.96005 0.87552 0.95906 1.48741 1.55218 1.15216 1.17431 1.19985 0.79360 0.79450 0.87050 1.90706 1.39145 1.41904 1.67278 1.23503 1.03801 1.07499 0.94896 1.85398 1.71238 1.08894 1.17865 1.22859 1.39502 1.04568 1.01361 0.90937 1.24993 0.95167 0.94588 0.98847 1.70022 1.38685 1.04552 1.37015 0.86168 0.79078 0.78223 0.82031 1.20283 1.20740 1.19692 1.22328 0.96146 0.98883 0.83221 1.22730 0.96119 0.93884 0.90792 0.91678 1.60455 1.60218 1.07789 1.01945 1.20484 1.00623 0.93590 0.85141 1.20180 0.89080 0.98013 0.99644 1.26939 1.01937 1.04897 1.03126 1.84131 1.11536 1.30102 1.37335 1.28358 0.96196 1.03101 1.00324 1.66128 1.37351 1.05408 1.09238 0.91852 0.92107 0.92530 0.91356 0.90327 0.89288 0.89355 0.92190 0.90388 0.90145 0.83243 0.88970 0.93051 0.80221 0.78458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.89 37.16 0.33 -0.80 16 2 C -0.11 -0.91 3.08 -89.25 -0.28 -1.18 16 3 H 0.09 0.69 7.94 -51.93 -0.41 0.28 16 4 C 0.11 1.19 6.42 -2.98 -0.02 1.17 16 5 N -0.63 -9.27 3.29 -169.76 -0.56 -9.83 16 6 C 0.55 10.89 7.91 -10.99 -0.09 10.80 16 7 O -0.52 -12.18 16.07 5.56 0.09 -12.09 16 8 C -0.15 -3.05 5.24 36.00 0.19 -2.86 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 11 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 14 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 C 0.12 1.46 6.77 -2.12 -0.01 1.45 16 19 C 0.08 0.71 2.94 -65.83 -0.19 0.52 16 20 H 0.07 0.66 7.55 -51.93 -0.39 0.27 16 21 N -0.67 -5.61 6.34 -106.00 -0.67 -6.29 16 22 C 0.13 1.10 5.99 -4.97 -0.03 1.07 16 23 C 0.06 0.53 6.25 -84.22 -0.53 0.01 16 24 C -0.23 -1.67 11.12 29.12 0.32 -1.34 16 25 S 0.12 0.66 23.22 -107.50 -2.50 -1.83 16 26 C 0.02 0.12 12.23 51.58 0.63 0.75 16 27 N -0.47 -4.15 10.53 -11.89 -0.13 -4.28 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.86 7.09 -51.93 -0.37 0.49 16 33 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 34 H 0.09 1.70 7.92 -51.92 -0.41 1.29 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.10 7.85 -51.93 -0.41 0.69 16 38 H 0.35 2.79 8.32 -39.29 -0.33 2.47 16 39 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 41 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.20 0.62 8.06 -52.48 -0.42 0.20 16 LS Contribution 379.86 15.07 5.72 5.72 Total: -1.00 -35.07 379.86 -10.10 -45.17 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.08 Total: -0.17 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 0.53 Total: -3.44 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.62 Total: -45.95 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -4.71 Total: -5.71 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.07 -10.10 -45.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.241 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds