Wall clock time and date at job start Sat Apr 11 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.28986 * 2 1 4 4 C 1.54001 * 110.32967 * 122.13901 * 2 1 3 5 5 N 1.47492 * 107.08521 * 117.58598 * 4 2 1 6 6 C 1.34776 * 127.03328 * 205.48297 * 5 4 2 7 7 O 1.21275 * 120.00035 * 179.97438 * 6 5 4 8 8 C 1.50694 * 119.99962 * 359.97438 * 6 5 4 9 9 S 1.81002 * 109.47090 * 179.97438 * 8 6 5 10 10 C 1.76198 * 100.00188 * 179.97438 * 9 8 6 11 11 H 1.08009 * 120.00093 * 0.02562 * 10 9 8 12 12 C 1.38792 * 120.00296 * 179.97438 * 10 9 8 13 13 N 1.31637 * 119.99882 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00286 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46775 * 90.00090 * 14 12 10 16 16 H 1.48495 * 109.47320 * 210.00033 * 14 12 10 17 17 H 1.48494 * 109.47229 * 330.00254 * 14 12 10 18 18 C 1.48119 * 105.93147 * 25.44851 * 5 4 2 19 19 C 1.54621 * 110.32585 * 237.76194 * 2 1 3 20 20 H 1.08990 * 110.73922 * 337.59379 * 19 2 1 21 21 N 1.46901 * 110.73978 * 100.92392 * 19 2 1 22 22 C 1.46908 * 110.99653 * 205.00091 * 21 19 2 23 23 C 1.50702 * 109.46600 * 179.97438 * 22 21 19 24 24 C 1.33638 * 122.74626 * 94.73534 * 23 22 21 25 25 S 1.76203 * 107.91944 * 179.97438 * 24 23 22 26 26 C 1.70976 * 90.28217 * 0.27415 * 25 24 23 27 27 N 1.29024 * 110.17072 * 359.83636 * 26 25 24 28 28 H 1.09002 * 109.47153 * 299.31350 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.31541 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.31522 * 1 2 3 31 31 H 1.09003 * 109.91422 * 236.94489 * 4 2 1 32 32 H 1.08997 * 109.91050 * 358.03278 * 4 2 1 33 33 H 1.09004 * 109.47709 * 299.99895 * 8 6 5 34 34 H 1.09000 * 109.47271 * 59.99937 * 8 6 5 35 35 H 0.97000 * 120.00026 * 179.97438 * 13 12 10 36 36 H 1.08999 * 110.66058 * 79.14725 * 18 5 4 37 37 H 1.08999 * 110.65908 * 202.10089 * 18 5 4 38 38 H 1.00902 * 110.99894 * 328.94875 * 21 19 2 39 39 H 1.08998 * 109.46515 * 299.99355 * 22 21 19 40 40 H 1.08997 * 109.47092 * 59.99988 * 22 21 19 41 41 H 1.07992 * 126.04186 * 0.02832 * 24 23 22 42 42 H 1.08009 * 124.91198 * 179.83990 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0650 -0.7682 1.2228 5 7 2.8277 -1.9218 0.7101 6 6 3.0614 -3.0874 1.3451 7 8 3.7092 -3.9557 0.7999 8 6 2.5179 -3.3117 2.7326 9 16 2.9966 -4.9593 3.3091 10 6 2.2521 -4.9530 4.9060 11 1 1.7026 -4.0861 5.2423 12 6 2.3708 -6.0625 5.7314 13 7 3.0401 -7.1193 5.3214 14 14 1.5808 -6.0562 7.4242 15 1 0.1971 -6.5864 7.3266 16 1 2.3744 -6.9101 8.3440 17 1 1.5428 -4.6670 7.9475 18 6 3.2836 -1.5375 -0.6458 19 6 2.0671 -0.7735 -1.2264 20 1 1.3175 -1.4697 -1.6021 21 7 2.4919 0.1555 -2.2821 22 6 2.4360 -0.4867 -3.6022 23 6 2.8772 0.4948 -4.6573 24 6 4.1343 0.5571 -5.1062 25 16 4.2134 1.8298 -6.3222 26 6 2.5500 2.1571 -6.1000 27 7 2.0563 1.3662 -5.2081 28 1 -0.3633 0.5031 0.8961 29 1 -0.3633 -1.0276 -0.0123 30 1 -0.3634 0.5244 -0.8838 31 1 2.7182 -0.1228 1.8101 32 1 1.2336 -1.1129 1.8375 33 1 2.9231 -2.5581 3.4079 34 1 1.4307 -3.2355 2.7136 35 1 3.1233 -7.8945 5.8984 36 1 4.1553 -0.8857 -0.5881 37 1 3.5055 -2.4225 -1.2422 38 1 1.9377 0.9986 -2.2664 39 1 3.0968 -1.3534 -3.6127 40 1 1.4143 -0.8059 -3.8079 41 1 4.9564 -0.0637 -4.7818 42 1 1.9932 2.9160 -6.6297 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700255179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:06 Heat of formation + Delta-G solvation = -7.002168 kcal Electronic energy + Delta-G solvation = -23982.825238 eV Core-core repulsion = 20407.972984 eV Total energy + Delta-G solvation = -3574.852253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24140 -40.73018 -39.09156 -36.11149 -34.59243 -33.62084 -31.91144 -31.24056 -28.95066 -27.69167 -27.32024 -26.80878 -25.31445 -23.18895 -21.39991 -20.84082 -20.42419 -19.61869 -18.91827 -18.05880 -17.52743 -16.96123 -16.88929 -16.66376 -16.22952 -15.98078 -15.58629 -15.35240 -15.26044 -14.63782 -14.55280 -14.37061 -14.21093 -14.09226 -13.95360 -13.66100 -13.39570 -13.20308 -13.02275 -12.89748 -12.78452 -12.61118 -12.38844 -12.01205 -11.96796 -11.73746 -11.60464 -11.14790 -10.98128 -10.62973 -10.38299 -10.29509 -9.90216 -9.78578 -9.47941 -8.68917 -8.35135 -6.14044 -0.18247 0.51433 0.82310 1.22110 1.42448 1.43762 1.53989 1.55499 1.74663 2.05552 2.26646 2.98930 3.10589 3.20514 3.35647 3.45765 3.57215 3.86897 3.91914 4.07600 4.17434 4.23471 4.26886 4.35884 4.43373 4.47581 4.49486 4.57090 4.64773 4.74313 4.77896 4.86271 4.89138 4.98883 5.08150 5.16921 5.26394 5.34833 5.41099 5.90128 6.19253 6.27949 6.41416 6.77695 7.05807 7.08631 8.74189 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.030587 B = 0.001839 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.191863 B =15223.368488 C =15879.529727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.113 0.887 4 C 0.098 3.902 5 N -0.620 5.620 6 C 0.550 3.450 7 O -0.568 6.568 8 C -0.119 4.119 9 S -0.150 6.150 10 C -0.546 4.546 11 H 0.083 0.917 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 1.000 3.000 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.257 1.257 18 C 0.115 3.885 19 C 0.088 3.912 20 H 0.058 0.942 21 N -0.665 5.665 22 C 0.136 3.864 23 C 0.047 3.953 24 C -0.245 4.245 25 S 0.154 5.846 26 C 0.016 3.984 27 N -0.498 5.498 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.271 0.729 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.354 0.646 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.187 0.813 42 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.488 25.447 -21.879 33.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.131 0.869 4 C -0.024 4.024 5 N -0.355 5.355 6 C 0.339 3.661 7 O -0.446 6.446 8 C -0.270 4.270 9 S 0.077 5.923 10 C -0.693 4.693 11 H 0.101 0.899 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.181 1.181 18 C -0.008 4.008 19 C -0.023 4.023 20 H 0.076 0.924 21 N -0.298 5.298 22 C 0.004 3.996 23 C -0.084 4.084 24 C -0.385 4.385 25 S 0.407 5.593 26 C -0.282 4.282 27 N -0.212 5.212 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.175 0.825 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.205 0.795 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.597 24.292 -23.041 33.520 hybrid contribution -2.058 -0.230 1.920 2.824 sum -3.655 24.062 -21.122 32.225 Atomic orbital electron populations 1.21879 0.92950 1.01964 1.03306 1.22234 0.96976 1.00219 0.91911 0.86910 1.22474 0.96142 0.86436 0.97361 1.48651 1.54195 1.14523 1.18114 1.19737 0.79210 0.80448 0.86726 1.90684 1.41669 1.44056 1.68211 1.23292 1.04819 1.03011 0.95896 1.85591 1.72442 1.15132 1.19159 1.23190 1.39576 1.05233 1.01348 0.89869 1.26148 0.95526 0.93919 1.03584 1.70190 1.40248 1.05439 1.38889 0.84937 0.78051 0.78945 0.75946 1.19265 1.20259 1.18116 1.22481 0.97871 0.98584 0.81846 1.22514 0.94289 0.93911 0.91573 0.92376 1.60373 1.60147 1.07613 1.01700 1.20428 1.00252 0.93713 0.85189 1.20187 0.89608 0.98486 1.00162 1.27150 1.01902 1.05695 1.03741 1.84000 1.10668 1.28683 1.35957 1.28887 0.96940 1.02831 0.99502 1.66141 1.38143 1.06388 1.10565 0.90638 0.93502 0.91404 0.89693 0.89883 0.87551 0.87550 0.91968 0.89604 0.92074 0.82546 0.89223 0.93609 0.79534 0.75721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.89 71.98 0.64 -1.17 16 2 C -0.09 -1.35 3.08 -9.90 -0.03 -1.38 16 3 H 0.11 1.26 7.94 -2.39 -0.02 1.24 16 4 C 0.10 1.93 6.42 86.53 0.56 2.49 16 5 N -0.62 -17.84 3.29 -809.39 -2.66 -20.51 16 6 C 0.55 21.95 7.91 87.66 0.69 22.65 16 7 O -0.57 -27.92 16.07 -3.01 -0.05 -27.97 16 8 C -0.12 -4.95 5.24 71.23 0.37 -4.58 16 9 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 10 C -0.55 -31.48 9.50 67.95 0.65 -30.84 16 11 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 12 C 0.01 0.74 5.49 84.85 0.47 1.21 16 13 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 14 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 15 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 16 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 18 C 0.12 2.81 6.77 86.73 0.59 3.39 16 19 C 0.09 1.55 2.94 46.13 0.14 1.68 16 20 H 0.06 1.14 7.55 -2.39 -0.02 1.12 16 21 N -0.67 -10.18 6.34 -489.29 -3.10 -13.28 16 22 C 0.14 2.18 5.99 85.56 0.51 2.70 16 23 C 0.05 0.77 6.25 41.52 0.26 1.03 16 24 C -0.24 -3.32 11.12 66.78 0.74 -2.58 16 25 S 0.15 1.47 23.22 -56.49 -1.31 0.16 16 26 C 0.02 0.17 12.23 130.65 1.60 1.77 16 27 N -0.50 -8.21 10.53 -191.54 -2.02 -10.22 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.74 8.13 -2.39 -0.02 0.72 16 30 H 0.07 0.73 8.14 -2.38 -0.02 0.72 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.60 7.09 -2.39 -0.02 1.58 16 33 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 34 H 0.11 4.01 7.92 -2.40 -0.02 3.99 16 35 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 1.74 7.85 -2.39 -0.02 1.72 16 38 H 0.35 4.92 8.32 -89.69 -0.75 4.18 16 39 H 0.09 1.45 8.10 -2.39 -0.02 1.43 16 40 H 0.05 0.78 8.08 -2.39 -0.02 0.76 16 41 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.23 0.83 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -78.72 379.86 -0.53 -79.25 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.29 Total: 16.26 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 7.18 Total: -3.63 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -7.50 Total: -100.16 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.05 Total: -27.97 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -7.07 SS G_CDS: -2.47 Total: -9.55 kcal Total: -78.72 -0.53 -79.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.250 kcal (2) G-P(sol) polarization free energy of solvation -78.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds