Wall clock time and date at job start Sat Apr 11 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.64505 * 2 1 4 4 C 1.54322 * 110.72195 * 236.85847 * 2 1 3 5 5 N 1.47024 * 107.27028 * 263.82946 * 4 2 1 6 6 C 1.34771 * 125.64941 * 181.02024 * 5 4 2 7 7 O 1.21289 * 120.00201 * 180.02562 * 6 5 4 8 8 C 1.50704 * 120.00220 * 0.02562 * 6 5 4 9 9 S 1.80998 * 109.47205 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99645 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00111 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99720 * 179.97438 * 10 9 8 13 13 N 1.31632 * 120.00093 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00020 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 90.00077 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00257 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00251 * 14 12 10 18 18 C 1.47431 * 108.70378 * 1.28475 * 5 4 2 19 19 C 1.55131 * 104.71883 * 335.55425 * 18 5 4 20 20 H 1.09002 * 111.22546 * 279.17259 * 19 18 5 21 21 N 1.46901 * 110.90392 * 155.27339 * 19 18 5 22 22 C 1.46899 * 110.99865 * 92.97154 * 21 19 18 23 23 C 1.50702 * 109.47127 * 179.97438 * 22 21 19 24 24 C 1.33640 * 122.74307 * 95.00394 * 23 22 21 25 25 S 1.76205 * 107.92255 * 179.97438 * 24 23 22 26 26 C 1.70981 * 90.28039 * 0.02562 * 25 24 23 27 27 N 1.29029 * 110.16718 * 359.72816 * 26 25 24 28 28 H 1.09001 * 109.47114 * 181.69185 * 1 2 3 29 29 H 1.08996 * 109.46905 * 301.68907 * 1 2 3 30 30 H 1.09005 * 109.46947 * 61.68671 * 1 2 3 31 31 H 1.08993 * 109.88592 * 144.41469 * 4 2 1 32 32 H 1.08995 * 110.00870 * 23.31913 * 4 2 1 33 33 H 1.09004 * 109.46909 * 59.99989 * 8 6 5 34 34 H 1.08994 * 109.46860 * 300.00327 * 8 6 5 35 35 H 0.96993 * 120.00092 * 359.97438 * 13 12 10 36 36 H 1.08997 * 110.36218 * 94.47838 * 18 5 4 37 37 H 1.08991 * 110.36680 * 216.80539 * 18 5 4 38 38 H 1.00897 * 111.00067 * 216.92583 * 21 19 18 39 39 H 1.08991 * 109.47838 * 300.00444 * 22 21 19 40 40 H 1.09002 * 109.47009 * 60.00056 * 22 21 19 41 41 H 1.08002 * 126.04208 * 0.02562 * 24 23 22 42 42 H 1.07999 * 124.91489 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 -1.2086 5 7 2.3716 -2.1519 -0.7426 6 6 2.8849 -3.1452 -1.4950 7 8 3.0884 -4.2352 -1.0034 8 6 3.2062 -2.9018 -2.9471 9 16 3.8760 -4.4156 -3.6789 10 6 4.1552 -3.8607 -5.3278 11 1 3.9157 -2.8443 -5.6034 12 6 4.6838 -4.7297 -6.2723 13 7 4.9760 -5.9684 -5.9363 14 14 4.9804 -4.1413 -8.0202 15 1 6.3526 -3.5840 -8.1288 16 1 3.9902 -3.0890 -8.3631 17 1 4.8342 -5.2830 -8.9585 18 6 2.0075 -2.2536 0.6824 19 6 2.0790 -0.7974 1.2125 20 1 3.1059 -0.5092 1.4371 21 7 1.2173 -0.6253 2.3897 22 6 1.9720 -0.8433 3.6309 23 6 1.0573 -0.6579 4.8142 24 6 0.4312 -1.6769 5.4104 25 16 -0.5270 -1.0232 6.7368 26 6 0.0091 0.5554 6.3572 27 7 0.8135 0.5216 5.3489 28 1 -0.3633 -1.0272 0.0303 29 1 -0.3633 0.5398 0.8744 30 1 -0.3633 0.4874 -0.9048 31 1 2.9868 -0.3180 -1.5780 32 1 1.3283 -0.8223 -2.0009 33 1 3.9434 -2.1029 -3.0271 34 1 2.2983 -2.6127 -3.4765 35 1 4.8224 -6.2738 -5.0287 36 1 0.9974 -2.6492 0.7884 37 1 2.7207 -2.8851 1.2120 38 1 0.7796 0.2838 2.3875 39 1 2.3752 -1.8559 3.6380 40 1 2.7907 -0.1260 3.6891 41 1 0.5009 -2.7174 5.1296 42 1 -0.2798 1.4506 6.8878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700255181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:08 Heat of formation + Delta-G solvation = 14.112066 kcal Electronic energy + Delta-G solvation = -24069.767191 eV Core-core repulsion = 20495.830519 eV Total energy + Delta-G solvation = -3573.936672 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45156 -39.99187 -37.97188 -35.29144 -32.60742 -32.51421 -31.02974 -30.04183 -27.99045 -26.72850 -26.19930 -24.87562 -24.61436 -22.62685 -20.25253 -19.89071 -19.40286 -18.53019 -18.21156 -16.86532 -16.56731 -16.36638 -15.55734 -15.44616 -15.07446 -14.84417 -14.40256 -14.20941 -13.94337 -13.80883 -13.67563 -13.52865 -13.11503 -12.98598 -12.71391 -12.47527 -12.42740 -12.23888 -11.90020 -11.84367 -11.73117 -11.32351 -11.08196 -10.91233 -10.89463 -10.18788 -10.14170 -9.89366 -9.57447 -9.50363 -9.38249 -9.00610 -8.88839 -8.52004 -8.21187 -6.66456 -6.61638 -3.99351 0.29061 0.95739 1.29437 2.27773 2.80325 2.98660 3.32980 3.39218 3.45024 3.56621 3.69331 3.95071 4.10862 4.25020 4.32162 4.59601 4.64123 4.69745 4.90255 4.91955 5.02028 5.07794 5.14102 5.19399 5.23011 5.34897 5.39071 5.43537 5.57022 5.65848 5.67153 5.68553 5.77132 5.78811 5.87328 6.02930 6.09259 6.33904 6.58566 6.89905 7.26503 7.61434 7.93091 8.48029 8.50850 9.27812 10.82391 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.032241 B = 0.001828 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.259846 B =15315.537448 C =15882.201782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 H 0.088 0.912 4 C 0.107 3.893 5 N -0.624 5.624 6 C 0.548 3.452 7 O -0.517 6.517 8 C -0.124 4.124 9 S -0.117 6.117 10 C -0.607 4.607 11 H 0.066 0.934 12 C 0.035 3.965 13 N -0.884 5.884 14 Si 1.087 2.913 15 H -0.284 1.284 16 H -0.287 1.287 17 H -0.280 1.280 18 C 0.122 3.878 19 C 0.076 3.924 20 H 0.067 0.933 21 N -0.669 5.669 22 C 0.133 3.867 23 C 0.062 3.938 24 C -0.229 4.229 25 S 0.118 5.882 26 C 0.018 3.982 27 N -0.468 5.468 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.278 0.722 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.350 0.650 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.180 0.820 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.099 17.194 24.695 32.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 H 0.106 0.894 4 C -0.017 4.017 5 N -0.362 5.362 6 C 0.336 3.664 7 O -0.391 6.391 8 C -0.275 4.275 9 S 0.109 5.891 10 C -0.755 4.755 11 H 0.084 0.916 12 C -0.176 4.176 13 N -0.519 5.519 14 Si 0.913 3.087 15 H -0.211 1.211 16 H -0.213 1.213 17 H -0.205 1.205 18 C -0.002 4.002 19 C -0.035 4.035 20 H 0.085 0.915 21 N -0.302 5.302 22 C 0.001 3.999 23 C -0.069 4.069 24 C -0.369 4.369 25 S 0.370 5.630 26 C -0.280 4.280 27 N -0.182 5.182 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.171 0.829 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.198 0.802 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -11.884 14.481 24.462 30.812 hybrid contribution 0.195 2.750 0.238 2.767 sum -11.689 17.231 24.700 32.306 Atomic orbital electron populations 1.21693 0.93220 1.02940 1.01533 1.22382 0.97392 0.98950 0.93725 0.89356 1.22063 1.00521 0.82360 0.96720 1.48377 1.65092 1.11722 1.11005 1.19971 0.75945 0.82890 0.87595 1.90710 1.51742 1.23278 1.73363 1.23285 1.04527 1.05830 0.93839 1.84819 1.82023 1.12159 1.10065 1.23725 1.53822 1.02637 0.95283 0.91589 1.26059 0.92994 0.93565 1.04947 1.70764 1.42665 1.16050 1.22388 0.83288 0.76523 0.75425 0.73435 1.21065 1.21299 1.20498 1.22131 1.01285 0.95729 0.81068 1.22754 0.95406 0.95833 0.89518 0.91498 1.60422 1.32154 1.37706 0.99962 1.20489 0.92214 1.02368 0.84809 1.20157 1.00975 0.86670 0.99146 1.26946 1.03978 1.05201 1.00769 1.84146 1.45066 1.03012 1.30726 1.28358 0.99236 1.01866 0.98524 1.66126 1.15216 1.27179 1.09653 0.91711 0.92183 0.92394 0.91218 0.90904 0.89095 0.89054 0.90948 0.90606 0.90804 0.82923 0.89005 0.93071 0.80231 0.78445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.49 37.16 0.32 -0.74 16 2 C -0.11 -0.86 3.39 -88.79 -0.30 -1.16 16 3 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.11 1.17 6.06 -3.06 -0.02 1.15 16 5 N -0.62 -9.11 3.32 -170.38 -0.57 -9.68 16 6 C 0.55 10.75 7.87 -10.99 -0.09 10.66 16 7 O -0.52 -12.13 16.12 5.55 0.09 -12.05 16 8 C -0.12 -2.59 5.35 36.01 0.19 -2.40 16 9 S -0.12 -3.21 19.60 -107.50 -2.11 -5.31 16 10 C -0.61 -17.65 9.50 30.94 0.29 -17.36 16 11 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 12 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16 13 N -0.88 -27.73 13.67 55.49 0.76 -26.97 16 14 Si 1.09 25.15 29.92 -169.99 -5.09 20.06 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.12 1.50 6.29 -2.41 -0.02 1.48 16 19 C 0.08 0.68 3.19 -65.44 -0.21 0.47 16 20 H 0.07 0.60 7.83 -51.93 -0.41 0.20 16 21 N -0.67 -5.36 5.74 -105.60 -0.61 -5.97 16 22 C 0.13 1.05 5.99 -4.98 -0.03 1.02 16 23 C 0.06 0.52 6.25 -84.23 -0.53 -0.01 16 24 C -0.23 -1.64 11.12 29.12 0.32 -1.32 16 25 S 0.12 0.66 23.22 -107.50 -2.50 -1.84 16 26 C 0.02 0.11 12.23 51.59 0.63 0.74 16 27 N -0.47 -4.05 10.53 -11.90 -0.13 -4.17 16 28 H 0.06 0.61 7.42 -51.93 -0.39 0.22 16 29 H 0.06 0.41 6.75 -51.93 -0.35 0.06 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.78 7.85 -51.93 -0.41 0.37 16 33 H 0.09 1.78 8.14 -51.91 -0.42 1.35 16 34 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 35 H 0.28 8.92 7.12 -40.82 -0.29 8.62 16 36 H 0.08 0.96 7.69 -51.93 -0.40 0.56 16 37 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16 38 H 0.35 2.70 7.01 -39.29 -0.28 2.42 16 39 H 0.09 0.70 8.10 -51.93 -0.42 0.27 16 40 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 41 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.20 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -35.84 375.18 -9.95 -45.79 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.94 Total: 1.02 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 0.47 Total: -6.54 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.54 Total: -46.80 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.09 Total: 20.06 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -4.60 Total: -7.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.84 -9.95 -45.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.906 kcal (2) G-P(sol) polarization free energy of solvation -35.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds