Wall clock time and date at job start Sat Apr 11 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.64505 * 2 1 4 4 C 1.54322 * 110.72195 * 236.85847 * 2 1 3 5 5 N 1.47024 * 107.27028 * 263.82946 * 4 2 1 6 6 C 1.34771 * 125.64941 * 181.02024 * 5 4 2 7 7 O 1.21289 * 120.00201 * 180.02562 * 6 5 4 8 8 C 1.50704 * 120.00220 * 0.02562 * 6 5 4 9 9 S 1.80998 * 109.47205 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99645 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00111 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99720 * 179.97438 * 10 9 8 13 13 N 1.31632 * 120.00093 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00020 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 90.00077 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00257 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00251 * 14 12 10 18 18 C 1.47431 * 108.70378 * 1.28475 * 5 4 2 19 19 C 1.55131 * 104.71883 * 335.55425 * 18 5 4 20 20 H 1.09002 * 111.22546 * 279.17259 * 19 18 5 21 21 N 1.46901 * 110.90392 * 155.27339 * 19 18 5 22 22 C 1.46899 * 110.99865 * 92.97154 * 21 19 18 23 23 C 1.50702 * 109.47127 * 179.97438 * 22 21 19 24 24 C 1.33640 * 122.74307 * 95.00394 * 23 22 21 25 25 S 1.76205 * 107.92255 * 179.97438 * 24 23 22 26 26 C 1.70981 * 90.28039 * 0.02562 * 25 24 23 27 27 N 1.29029 * 110.16718 * 359.72816 * 26 25 24 28 28 H 1.09001 * 109.47114 * 181.69185 * 1 2 3 29 29 H 1.08996 * 109.46905 * 301.68907 * 1 2 3 30 30 H 1.09005 * 109.46947 * 61.68671 * 1 2 3 31 31 H 1.08993 * 109.88592 * 144.41469 * 4 2 1 32 32 H 1.08995 * 110.00870 * 23.31913 * 4 2 1 33 33 H 1.09004 * 109.46909 * 59.99989 * 8 6 5 34 34 H 1.08994 * 109.46860 * 300.00327 * 8 6 5 35 35 H 0.96993 * 120.00092 * 359.97438 * 13 12 10 36 36 H 1.08997 * 110.36218 * 94.47838 * 18 5 4 37 37 H 1.08991 * 110.36680 * 216.80539 * 18 5 4 38 38 H 1.00897 * 111.00067 * 216.92583 * 21 19 18 39 39 H 1.08991 * 109.47838 * 300.00444 * 22 21 19 40 40 H 1.09002 * 109.47009 * 60.00056 * 22 21 19 41 41 H 1.08002 * 126.04208 * 0.02562 * 24 23 22 42 42 H 1.07999 * 124.91489 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 -1.2086 5 7 2.3716 -2.1519 -0.7426 6 6 2.8849 -3.1452 -1.4950 7 8 3.0884 -4.2352 -1.0034 8 6 3.2062 -2.9018 -2.9471 9 16 3.8760 -4.4156 -3.6789 10 6 4.1552 -3.8607 -5.3278 11 1 3.9157 -2.8443 -5.6034 12 6 4.6838 -4.7297 -6.2723 13 7 4.9760 -5.9684 -5.9363 14 14 4.9804 -4.1413 -8.0202 15 1 6.3526 -3.5840 -8.1288 16 1 3.9902 -3.0890 -8.3631 17 1 4.8342 -5.2830 -8.9585 18 6 2.0075 -2.2536 0.6824 19 6 2.0790 -0.7974 1.2125 20 1 3.1059 -0.5092 1.4371 21 7 1.2173 -0.6253 2.3897 22 6 1.9720 -0.8433 3.6309 23 6 1.0573 -0.6579 4.8142 24 6 0.4312 -1.6769 5.4104 25 16 -0.5270 -1.0232 6.7368 26 6 0.0091 0.5554 6.3572 27 7 0.8135 0.5216 5.3489 28 1 -0.3633 -1.0272 0.0303 29 1 -0.3633 0.5398 0.8744 30 1 -0.3633 0.4874 -0.9048 31 1 2.9868 -0.3180 -1.5780 32 1 1.3283 -0.8223 -2.0009 33 1 3.9434 -2.1029 -3.0271 34 1 2.2983 -2.6127 -3.4765 35 1 4.8224 -6.2738 -5.0287 36 1 0.9974 -2.6492 0.7884 37 1 2.7207 -2.8851 1.2120 38 1 0.7796 0.2838 2.3875 39 1 2.3752 -1.8559 3.6380 40 1 2.7907 -0.1260 3.6891 41 1 0.5009 -2.7174 5.1296 42 1 -0.2798 1.4506 6.8878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700255181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:07 Heat of formation + Delta-G solvation = -11.426072 kcal Electronic energy + Delta-G solvation = -24070.874608 eV Core-core repulsion = 20495.830519 eV Total energy + Delta-G solvation = -3575.044088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38286 -40.76176 -39.21698 -36.17302 -34.75695 -33.55740 -31.76324 -31.32694 -29.00827 -27.58395 -27.15228 -26.78838 -25.28968 -23.58243 -21.04263 -20.82271 -20.53143 -20.11246 -19.00932 -18.24494 -17.54087 -17.15064 -16.91171 -16.36400 -16.10661 -15.92465 -15.72718 -15.63023 -14.97965 -14.90816 -14.58807 -14.38521 -14.20841 -14.13765 -14.09198 -13.74319 -13.51739 -13.39665 -13.16587 -13.07962 -12.75034 -12.35414 -12.05983 -11.94164 -11.80294 -11.65121 -11.56961 -11.11146 -11.08769 -10.64625 -10.39748 -10.34084 -9.89933 -9.79260 -9.50418 -8.93571 -8.89462 -6.29186 -0.19785 0.49831 0.81144 1.12280 1.44060 1.51010 1.61322 1.72020 1.79619 1.97968 2.33004 3.01586 3.04873 3.10974 3.24754 3.41776 3.49302 3.75383 3.92217 4.06060 4.09202 4.14629 4.21509 4.29046 4.30574 4.45800 4.48905 4.56571 4.61411 4.69159 4.76902 4.84552 4.84769 5.01455 5.12825 5.16004 5.25882 5.44997 5.63533 5.86494 6.13706 6.24231 6.33193 6.75963 6.99119 7.05541 8.49849 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.032241 B = 0.001828 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.259846 B =15315.537448 C =15882.201782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 H 0.117 0.883 4 C 0.095 3.905 5 N -0.613 5.613 6 C 0.545 3.455 7 O -0.568 6.568 8 C -0.099 4.099 9 S -0.196 6.196 10 C -0.612 4.612 11 H 0.076 0.924 12 C -0.020 4.020 13 N -0.913 5.913 14 Si 1.140 2.860 15 H -0.267 1.267 16 H -0.262 1.262 17 H -0.279 1.279 18 C 0.118 3.882 19 C 0.089 3.911 20 H 0.072 0.928 21 N -0.666 5.666 22 C 0.135 3.865 23 C 0.048 3.952 24 C -0.246 4.246 25 S 0.152 5.848 26 C 0.017 3.983 27 N -0.497 5.497 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.260 0.740 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.356 0.644 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.185 0.815 42 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.193 20.544 24.984 34.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.111 4.111 3 H 0.135 0.865 4 C -0.027 4.027 5 N -0.348 5.348 6 C 0.333 3.667 7 O -0.447 6.447 8 C -0.250 4.250 9 S 0.031 5.969 10 C -0.760 4.760 11 H 0.094 0.906 12 C -0.223 4.223 13 N -0.548 5.548 14 Si 0.957 3.043 15 H -0.192 1.192 16 H -0.186 1.186 17 H -0.204 1.204 18 C -0.005 4.005 19 C -0.022 4.022 20 H 0.090 0.910 21 N -0.300 5.300 22 C 0.004 3.996 23 C -0.083 4.083 24 C -0.387 4.387 25 S 0.405 5.595 26 C -0.281 4.281 27 N -0.211 5.211 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.178 0.822 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.203 0.797 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -13.017 17.900 24.805 33.244 hybrid contribution 0.419 1.785 0.343 1.865 sum -12.598 19.684 25.148 34.331 Atomic orbital electron populations 1.21666 0.92734 1.01974 1.02645 1.22389 0.97634 0.99611 0.91502 0.86496 1.22452 1.01575 0.80364 0.98313 1.48301 1.62649 1.12175 1.11646 1.19716 0.76433 0.83202 0.87342 1.90689 1.54408 1.25514 1.74049 1.23142 1.05139 1.02189 0.94551 1.85074 1.83120 1.17678 1.11012 1.24045 1.53263 1.03038 0.95642 0.90625 1.27872 0.91980 0.92959 1.09456 1.70887 1.44859 1.17592 1.21467 0.82681 0.77889 0.75669 0.68031 1.19228 1.18607 1.20416 1.22268 1.00385 0.98172 0.79660 1.22565 0.96045 0.93270 0.90292 0.91024 1.60316 1.31966 1.38087 0.99653 1.20445 0.92223 1.02152 0.84796 1.20199 1.01533 0.87078 0.99531 1.27146 1.04411 1.05527 1.01589 1.84026 1.43912 1.02199 1.29383 1.28893 0.98150 1.03227 0.97802 1.66146 1.16583 1.27475 1.10922 0.93699 0.90989 0.91391 0.89954 0.90176 0.87268 0.87409 0.92878 0.91002 0.92474 0.82234 0.89295 0.93182 0.79726 0.75684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 8.49 71.98 0.61 -1.08 16 2 C -0.09 -1.22 3.39 -9.61 -0.03 -1.26 16 3 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 4 C 0.10 1.83 6.06 86.73 0.53 2.35 16 5 N -0.61 -17.40 3.32 -811.36 -2.70 -20.10 16 6 C 0.55 21.56 7.87 87.66 0.69 22.25 16 7 O -0.57 -27.72 16.12 -3.06 -0.05 -27.77 16 8 C -0.10 -4.10 5.35 71.24 0.38 -3.72 16 9 S -0.20 -11.03 19.60 -56.49 -1.11 -12.13 16 10 C -0.61 -35.71 9.50 67.95 0.65 -35.07 16 11 H 0.08 4.13 7.80 -2.91 -0.02 4.10 16 12 C -0.02 -1.15 5.49 84.86 0.47 -0.68 16 13 N -0.91 -58.55 13.67 21.65 0.30 -58.25 16 14 Si 1.14 49.60 29.92 68.60 2.05 51.65 16 15 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 16 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 17 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 18 C 0.12 2.88 6.29 86.93 0.55 3.43 16 19 C 0.09 1.44 3.19 46.39 0.15 1.58 16 20 H 0.07 1.14 7.83 -2.39 -0.02 1.12 16 21 N -0.67 -9.67 5.74 -488.01 -2.80 -12.47 16 22 C 0.14 2.03 5.99 85.56 0.51 2.54 16 23 C 0.05 0.76 6.25 41.52 0.26 1.02 16 24 C -0.25 -3.34 11.12 66.78 0.74 -2.59 16 25 S 0.15 1.45 23.22 -56.49 -1.31 0.14 16 26 C 0.02 0.18 12.23 130.65 1.60 1.77 16 27 N -0.50 -7.89 10.53 -191.55 -2.02 -9.90 16 28 H 0.04 0.76 7.42 -2.39 -0.02 0.75 16 29 H 0.07 0.77 6.75 -2.39 -0.02 0.75 16 30 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.48 7.85 -2.39 -0.02 1.46 16 33 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 34 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 35 H 0.26 17.41 7.12 -92.71 -0.66 16.74 16 36 H 0.07 1.83 7.69 -2.39 -0.02 1.81 16 37 H 0.06 1.59 8.03 -2.39 -0.02 1.57 16 38 H 0.36 4.67 7.01 -89.70 -0.63 4.04 16 39 H 0.09 1.35 8.10 -2.39 -0.02 1.33 16 40 H 0.05 0.76 8.09 -2.39 -0.02 0.74 16 41 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 42 H 0.23 0.75 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -80.63 375.18 -0.03 -80.66 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.52 Total: 17.63 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 7.09 Total: -9.44 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -7.22 Total: -100.72 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.05 Total: -27.77 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.05 Total: 51.65 kcal Atomic # 16 Polarization: -9.58 SS G_CDS: -2.42 Total: -12.00 kcal Total: -80.63 -0.03 -80.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.234 kcal (2) G-P(sol) polarization free energy of solvation -80.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds