Wall clock time and date at job start Sat Apr 11 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00725 * 2 1 4 4 C 1.52998 * 109.47348 * 89.99656 * 3 2 1 5 5 N 1.46496 * 109.47348 * 180.02562 * 4 3 2 6 6 C 1.34773 * 119.99944 * 180.02562 * 5 4 3 7 7 O 1.21511 * 120.00114 * 359.97438 * 6 5 4 8 8 C 1.48160 * 119.99774 * 179.97438 * 6 5 4 9 9 C 1.39898 * 120.90940 * 359.97438 * 8 6 5 10 10 C 1.38044 * 119.06578 * 180.02562 * 9 8 6 11 11 N 1.31872 * 120.93533 * 0.02562 * 10 9 8 12 12 C 1.31971 * 122.01628 * 359.65622 * 11 10 9 13 13 F 1.35098 * 119.59075 * 180.33947 * 12 11 10 14 14 C 1.38520 * 120.82114 * 0.64271 * 12 11 10 15 15 C 1.34780 * 119.99745 * 180.02562 * 2 1 3 16 16 O 1.21277 * 120.00158 * 179.97438 * 15 2 1 17 17 C 1.50701 * 119.99722 * 0.02562 * 15 2 1 18 18 S 1.81006 * 109.47126 * 180.02562 * 17 15 2 19 19 C 1.76196 * 99.99955 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00555 * 0.02562 * 19 18 17 21 21 C 1.38800 * 119.99756 * 179.97438 * 19 18 17 22 22 N 1.31632 * 120.00292 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99956 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47581 * 60.00133 * 23 21 19 25 25 H 1.48504 * 109.47410 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47297 * 299.99822 * 23 21 19 27 27 H 1.08998 * 109.47380 * 89.99638 * 1 2 3 28 28 H 1.09003 * 109.47489 * 210.00288 * 1 2 3 29 29 H 1.09006 * 109.46494 * 330.00296 * 1 2 3 30 30 H 1.09000 * 109.46485 * 329.99870 * 3 2 1 31 31 H 1.08997 * 109.47618 * 210.00463 * 3 2 1 32 32 H 1.09001 * 109.46728 * 60.00299 * 4 3 2 33 33 H 1.09006 * 109.47266 * 300.00654 * 4 3 2 34 34 H 0.97003 * 119.99939 * 359.97438 * 5 4 3 35 35 H 1.07996 * 120.46361 * 359.97438 * 9 8 6 36 36 H 1.08001 * 119.52719 * 180.02562 * 10 9 8 37 37 H 1.08002 * 120.51468 * 179.67964 * 14 12 11 38 38 H 1.09001 * 109.47214 * 299.99994 * 17 15 2 39 39 H 1.08999 * 109.47592 * 60.00332 * 17 15 2 40 40 H 0.97001 * 120.00433 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 1.4425 5 7 3.1847 2.9792 1.4425 6 6 3.5220 3.5626 2.6096 7 8 3.2185 3.0363 3.6620 8 6 4.2629 4.8456 2.6096 9 6 4.6224 5.4678 1.4093 10 6 5.3129 6.6624 1.4536 11 7 5.6343 7.2172 2.6060 12 6 5.3100 6.6683 3.7614 13 9 5.6582 7.2828 4.9131 14 6 4.6224 5.4667 3.8082 15 6 2.1388 -1.1673 -0.0005 16 8 3.3516 -1.1674 -0.0010 17 6 1.3852 -2.4723 -0.0017 18 16 2.5613 -3.8482 -0.0014 19 6 1.4411 -5.2082 -0.0021 20 1 0.3758 -5.0305 -0.0029 21 6 1.9278 -6.5081 -0.0026 22 7 3.2261 -6.7249 -0.0021 23 14 0.7402 -7.9500 -0.0041 24 1 -0.1142 -7.8865 -1.2169 25 1 1.5062 -9.2223 -0.0038 26 1 -0.1155 -7.8878 1.2081 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3632 0.8901 0.5138 30 1 1.6086 2.0282 -0.5139 31 1 3.1500 1.1383 -0.5139 32 1 3.0416 0.9506 1.9563 33 1 1.5002 1.8407 1.9563 34 1 3.4274 3.3992 0.6024 35 1 4.3642 5.0195 0.4613 36 1 5.5938 7.1494 0.5315 37 1 4.3640 5.0192 4.7566 38 1 0.7582 -2.5306 0.8880 39 1 0.7589 -2.5295 -0.8920 40 1 3.5663 -7.6333 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704191663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:17 Heat of formation + Delta-G solvation = -94.453714 kcal Electronic energy + Delta-G solvation = -25307.207032 eV Core-core repulsion = 21162.349419 eV Total energy + Delta-G solvation = -4144.857613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.18391 -41.76840 -40.91333 -40.13866 -37.22665 -35.83687 -34.58244 -34.11219 -32.24750 -31.70684 -29.66845 -27.69105 -27.53896 -26.06554 -24.75431 -23.93765 -22.13272 -20.75343 -19.79681 -19.44764 -18.57310 -18.08312 -17.75130 -17.41496 -17.28269 -17.00943 -16.88021 -16.78637 -16.53081 -16.41160 -15.76022 -15.32336 -15.08342 -15.06012 -14.64384 -14.49125 -14.33172 -14.24722 -14.15135 -13.55765 -13.32335 -13.21477 -13.15742 -13.01852 -12.85651 -12.65957 -12.39617 -11.73785 -11.68231 -11.28878 -11.12654 -10.95734 -10.85925 -10.34202 -10.26788 -10.19518 -9.78606 -8.67077 -8.34424 -6.12675 -0.62064 -0.25984 1.23378 1.41707 1.43967 1.50579 1.55834 1.58963 1.72834 2.22333 2.28447 2.44562 2.51971 2.99717 3.25397 3.31425 3.44940 3.68646 3.70224 3.70694 3.81479 4.03575 4.22595 4.29603 4.34531 4.38246 4.44659 4.50006 4.64036 4.71291 4.73808 4.77060 4.89976 4.99445 5.09972 5.38807 5.41633 5.54225 6.19034 6.21543 6.26826 6.44615 6.93683 7.06805 7.11704 8.74425 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.026033 B = 0.001703 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.310815 B =16439.223720 C =16759.960230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.110 3.890 4 C 0.109 3.891 5 N -0.695 5.695 6 C 0.557 3.443 7 O -0.570 6.570 8 C -0.067 4.067 9 C -0.128 4.128 10 C 0.143 3.857 11 N -0.520 5.520 12 C 0.289 3.711 13 F -0.119 7.119 14 C -0.148 4.148 15 C 0.530 3.470 16 O -0.560 6.560 17 C -0.125 4.125 18 S -0.155 6.155 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.260 1.260 25 H -0.280 1.280 26 H -0.263 1.263 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.423 0.577 35 H 0.194 0.806 36 H 0.219 0.781 37 H 0.151 0.849 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.190 29.267 -2.436 29.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.343 5.343 3 C -0.013 4.013 4 C -0.016 4.016 5 N -0.348 5.348 6 C 0.344 3.656 7 O -0.449 6.449 8 C -0.078 4.078 9 C -0.148 4.148 10 C -0.014 4.014 11 N -0.236 5.236 12 C 0.137 3.863 13 F -0.098 7.098 14 C -0.170 4.170 15 C 0.318 3.682 16 O -0.438 6.438 17 C -0.276 4.276 18 S 0.072 5.928 19 C -0.694 4.694 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.185 1.185 25 H -0.205 1.205 26 H -0.188 1.188 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.152 0.848 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.262 0.738 35 H 0.211 0.789 36 H 0.235 0.765 37 H 0.169 0.831 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.063 29.552 -1.648 29.756 hybrid contribution -1.762 -1.650 0.479 2.461 sum -4.825 27.902 -1.169 28.340 Atomic orbital electron populations 1.22167 0.76430 1.04852 1.03830 1.47704 1.08653 1.04292 1.73634 1.21652 0.99447 0.85574 0.94598 1.21662 0.96648 0.84372 0.98899 1.45452 1.57216 1.23465 1.08705 1.18322 0.78995 0.84393 0.83919 1.90826 1.55644 1.65503 1.32896 1.20117 0.98647 0.94591 0.94463 1.22859 0.97011 0.96080 0.98860 1.23344 0.91434 0.91774 0.94860 1.66968 1.21425 1.36488 0.98711 1.18041 0.96380 0.89715 0.82177 1.91624 1.90077 1.82882 1.45192 1.21913 0.99307 0.94601 1.01218 1.20171 0.87295 0.85616 0.75107 1.90691 1.15594 1.87446 1.50076 1.23391 1.02748 0.95013 1.06478 1.85580 1.12727 0.97432 1.97042 1.23165 0.94656 0.92638 1.58915 0.89823 1.26130 0.97575 1.01718 0.93757 1.70178 1.14129 1.22501 1.47963 0.85015 0.77628 0.75899 0.79529 1.18459 1.20519 1.18761 0.90312 0.91054 0.87918 0.84771 0.90104 0.94584 0.90297 0.73800 0.78918 0.76500 0.83143 0.87566 0.87130 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 10.24 127.77 1.31 2.22 16 2 N -0.61 -13.21 2.87 -846.77 -2.43 -15.64 16 3 C 0.11 1.68 5.52 86.38 0.48 2.15 16 4 C 0.11 2.01 6.00 86.38 0.52 2.53 16 5 N -0.69 -9.07 5.51 -465.68 -2.57 -11.64 16 6 C 0.56 10.70 7.80 86.88 0.68 11.38 16 7 O -0.57 -16.77 16.44 -3.75 -0.06 -16.83 16 8 C -0.07 -0.95 5.91 -19.89 -0.12 -1.07 16 9 C -0.13 -0.72 9.61 22.63 0.22 -0.50 16 10 C 0.14 0.98 11.17 84.64 0.95 1.92 16 11 N -0.52 -8.14 10.35 -197.08 -2.04 -10.18 16 12 C 0.29 5.28 8.41 84.74 0.71 5.99 16 13 F -0.12 -2.43 17.29 44.97 0.78 -1.66 16 14 C -0.15 -2.61 9.66 22.69 0.22 -2.39 16 15 C 0.53 18.40 7.69 87.66 0.67 19.07 16 16 O -0.56 -24.55 15.44 -3.02 -0.05 -24.59 16 17 C -0.13 -4.78 4.71 71.24 0.34 -4.44 16 18 S -0.16 -8.49 20.57 -56.49 -1.16 -9.65 16 19 C -0.55 -30.77 9.50 67.95 0.65 -30.13 16 20 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 21 C 0.01 0.73 5.49 84.86 0.47 1.20 16 22 N -0.91 -55.75 13.22 21.65 0.29 -55.46 16 23 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 27 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 1.09 6.44 -2.39 -0.02 1.07 16 29 H 0.10 0.74 8.07 -2.38 -0.02 0.72 16 30 H 0.13 0.72 8.07 -2.39 -0.02 0.70 16 31 H 0.08 1.50 7.42 -2.39 -0.02 1.48 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.42 1.69 6.61 -92.71 -0.61 1.08 16 35 H 0.19 -0.68 6.53 -2.91 -0.02 -0.70 16 36 H 0.22 -0.41 8.06 -2.91 -0.02 -0.44 16 37 H 0.15 2.87 7.74 -2.91 -0.02 2.84 16 38 H 0.11 3.70 7.40 -2.39 -0.02 3.69 16 39 H 0.11 3.75 8.11 -2.39 -0.02 3.73 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -89.75 369.28 2.34 -87.41 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 0.48 Total: 5.19 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 7.08 Total: 7.93 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -6.75 Total: -92.93 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.11 Total: -41.42 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.78 Total: -1.66 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -89.75 2.34 -87.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704191663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.047 kcal (2) G-P(sol) polarization free energy of solvation -89.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds