Wall clock time and date at job start Sat Apr 11 2020 06:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47140 * 2 1 4 4 C 1.52997 * 109.47288 * 239.99462 * 2 1 3 5 5 N 1.46502 * 109.47125 * 185.00339 * 4 2 1 6 6 C 1.34770 * 119.99970 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00175 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00079 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.47350 * 180.02562 * 8 6 5 10 10 C 1.76195 * 100.00076 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00381 * 359.97438 * 10 9 8 12 12 C 1.38803 * 119.99953 * 179.97438 * 10 9 8 13 13 N 1.31627 * 120.00166 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99903 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47274 * 90.00080 * 14 12 10 16 16 H 1.48504 * 109.46626 * 209.99592 * 14 12 10 17 17 H 1.48501 * 109.47138 * 329.99491 * 14 12 10 18 18 N 1.46506 * 109.46637 * 119.99498 * 2 1 3 19 19 C 1.34771 * 120.00260 * 274.99960 * 18 2 1 20 20 O 1.21530 * 120.00095 * 0.02562 * 19 18 2 21 21 C 1.47999 * 119.99962 * 180.02562 * 19 18 2 22 22 N 1.32809 * 119.75457 * 359.97263 * 21 19 18 23 23 C 1.31428 * 121.67052 * 179.74908 * 22 21 19 24 24 C 1.38681 * 120.97836 * 0.54929 * 23 22 21 25 25 C 1.38451 * 119.39296 * 359.46544 * 24 23 22 26 26 C 1.38956 * 118.46990 * 0.25395 * 25 24 23 27 27 F 1.35103 * 120.50685 * 180.02562 * 26 25 24 28 28 H 1.08992 * 109.47575 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47268 * 300.00531 * 1 2 3 30 30 H 1.09000 * 109.47236 * 59.99820 * 1 2 3 31 31 H 1.08999 * 109.47389 * 305.00500 * 4 2 1 32 32 H 1.08998 * 109.46820 * 65.00195 * 4 2 1 33 33 H 0.97001 * 119.99631 * 359.97438 * 5 4 2 34 34 H 1.09008 * 109.47143 * 299.99307 * 8 6 5 35 35 H 1.08998 * 109.47373 * 59.99713 * 8 6 5 36 36 H 0.97000 * 120.00563 * 180.02562 * 13 12 10 37 37 H 0.97006 * 119.99641 * 95.00636 * 18 2 1 38 38 H 1.07994 * 119.51413 * 180.28661 * 23 22 21 39 39 H 1.08002 * 120.30561 * 179.74935 * 24 23 22 40 40 H 1.08005 * 120.76284 * 180.27759 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5000 -0.8265 -1.1904 6 6 4.1731 -1.4285 -2.1909 7 8 3.5700 -1.8835 -3.1396 8 6 5.6749 -1.5372 -2.1302 9 16 6.2785 -2.3891 -3.6087 10 6 8.0101 -2.3764 -3.2837 11 1 8.3863 -1.9240 -2.3781 12 6 8.8909 -2.9479 -4.1916 13 7 8.4324 -3.4998 -5.2952 14 14 10.7267 -2.9351 -3.8467 15 1 11.0976 -4.1604 -3.0941 16 1 11.4713 -2.8987 -5.1311 17 1 11.0706 -1.7361 -3.0410 18 7 2.0182 -0.6906 1.1963 19 6 2.1469 -0.0182 2.3572 20 8 1.8575 1.1609 2.4118 21 6 2.6406 -0.7157 3.5655 22 7 2.9550 -2.0044 3.5005 23 6 3.4014 -2.6596 4.5487 24 6 3.5516 -2.0282 5.7743 25 6 3.2364 -0.6850 5.8899 26 6 2.7719 -0.0144 4.7650 27 9 2.4526 1.2967 4.8312 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.6053 -1.7199 -1.2951 32 1 1.7516 -0.1584 -2.1369 33 1 3.9823 -0.4622 -0.4317 34 1 6.1099 -0.5388 -2.0837 35 1 5.9629 -2.1007 -1.2427 36 1 9.0478 -3.8995 -5.9295 37 1 2.2489 -1.6318 1.1528 38 1 3.6509 -3.7061 4.4554 39 1 3.9156 -2.5781 6.6296 40 1 3.3493 -0.1703 6.8327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705114099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:21 Heat of formation + Delta-G solvation = -81.763111 kcal Electronic energy + Delta-G solvation = -26066.755416 eV Core-core repulsion = 21922.448109 eV Total energy + Delta-G solvation = -4144.307307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.37374 -40.98428 -39.76601 -38.97779 -36.52023 -33.83031 -33.20664 -32.42930 -31.87466 -30.93341 -29.36486 -26.08870 -25.54952 -25.29779 -24.06933 -22.15961 -20.91329 -20.34181 -18.81011 -18.11749 -17.87788 -17.58085 -16.61436 -16.41334 -16.28580 -16.21972 -15.60580 -15.11944 -15.05311 -14.80493 -14.59306 -14.24225 -14.06256 -13.80619 -13.72886 -13.46831 -13.10035 -12.99440 -12.90230 -12.84037 -12.55258 -12.22714 -11.79726 -11.30071 -11.06453 -11.02551 -10.77079 -10.76250 -10.57947 -10.12713 -9.82121 -9.64552 -9.47419 -9.36602 -9.07386 -8.93961 -8.23892 -6.49989 -6.21783 -3.92211 -0.05459 0.42414 2.25676 2.56977 3.01810 3.08227 3.20127 3.22143 3.27663 3.31827 3.44410 3.59088 3.71166 4.04930 4.16172 4.20361 4.23683 4.39828 4.71411 4.82885 4.95693 5.02862 5.13386 5.14620 5.16708 5.29459 5.35153 5.41360 5.52952 5.66269 5.76136 5.88866 5.90518 5.92030 6.12027 6.14413 6.55100 6.93096 7.20890 7.59535 7.66013 7.78491 8.35216 8.58333 9.23591 10.85657 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.011609 B = 0.002478 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.261174 B =11297.847347 C =12971.865095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 H 0.098 0.902 4 C 0.114 3.886 5 N -0.739 5.739 6 C 0.533 3.467 7 O -0.516 6.516 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.704 5.704 19 C 0.571 3.429 20 O -0.519 6.519 21 C 0.044 3.956 22 N -0.429 5.429 23 C 0.090 3.910 24 C -0.117 4.117 25 C -0.119 4.119 26 C 0.111 3.889 27 F -0.105 7.105 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.399 0.601 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.414 0.586 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.091 4.284 24.597 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 H 0.116 0.884 4 C -0.011 4.011 5 N -0.395 5.395 6 C 0.319 3.681 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.168 5.832 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.357 5.357 19 C 0.355 3.645 20 O -0.394 6.394 21 C -0.095 4.095 22 N -0.140 5.140 23 C -0.070 4.070 24 C -0.137 4.137 25 C -0.146 4.146 26 C 0.088 3.912 27 F -0.083 7.083 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.233 0.767 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.251 0.749 38 H 0.191 0.809 39 H 0.171 0.829 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.412 3.942 22.006 27.154 hybrid contribution 2.329 0.824 2.621 3.601 sum -13.083 4.766 24.627 28.290 Atomic orbital electron populations 1.22107 0.93756 1.02867 1.03209 1.21348 0.95184 0.97917 0.83004 0.88374 1.21613 0.81217 1.01425 0.96844 1.45992 1.06760 1.62069 1.24652 1.20299 0.89511 0.76698 0.81574 1.90706 1.69859 1.45992 1.32466 1.23532 0.93534 1.05697 1.07669 1.85379 1.04577 1.73139 1.20153 1.22867 0.91556 1.44309 1.09635 0.90956 1.24990 0.99582 0.94563 0.94440 1.70014 1.35427 1.35472 1.09390 0.86170 0.82860 0.78602 0.77881 1.20271 1.20747 1.19700 1.45924 1.65988 1.15049 1.08744 1.17655 0.78228 0.86024 0.82588 1.90871 1.49527 1.14637 1.84376 1.21372 1.03320 0.91261 0.93576 1.67646 1.08070 1.06143 1.32124 1.22979 0.95377 1.00972 0.87679 1.22375 0.97336 0.94075 0.99923 1.21765 0.98857 0.95453 0.98499 1.18671 0.98254 0.79878 0.94412 1.91639 1.89250 1.30761 1.96635 0.91851 0.91576 0.90815 0.90743 0.89740 0.76739 0.89261 0.89237 0.92179 0.74890 0.80889 0.82945 0.82668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.48 37.15 0.35 -0.94 16 2 C 0.13 1.21 2.73 -67.93 -0.19 1.02 16 3 H 0.10 1.01 7.58 -51.93 -0.39 0.62 16 4 C 0.11 1.24 5.23 -4.04 -0.02 1.22 16 5 N -0.74 -9.74 5.39 -60.30 -0.32 -10.07 16 6 C 0.53 9.81 7.85 -10.99 -0.09 9.72 16 7 O -0.52 -11.49 15.86 5.56 0.09 -11.40 16 8 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 11 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 14 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 18 N -0.70 -6.75 4.51 -54.70 -0.25 -7.00 16 19 C 0.57 6.53 7.77 -12.26 -0.10 6.43 16 20 O -0.52 -7.38 14.98 5.34 0.08 -7.30 16 21 C 0.04 0.44 6.75 -82.95 -0.56 -0.12 16 22 N -0.43 -3.69 9.54 -9.76 -0.09 -3.78 16 23 C 0.09 0.51 11.18 -17.56 -0.20 0.32 16 24 C -0.12 -0.48 10.11 -39.34 -0.40 -0.88 16 25 C -0.12 -0.68 10.16 -39.24 -0.40 -1.07 16 26 C 0.11 1.02 7.32 -38.82 -0.28 0.74 16 27 F -0.10 -1.19 15.55 2.25 0.04 -1.15 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.40 4.57 8.14 -40.82 -0.33 4.24 16 34 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 35 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.41 3.75 7.93 -40.82 -0.32 3.42 16 38 H 0.17 0.51 8.06 -52.49 -0.42 0.08 16 39 H 0.15 0.12 8.06 -52.49 -0.42 -0.30 16 40 H 0.16 0.48 8.06 -52.48 -0.42 0.06 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -36.87 371.15 -7.64 -44.51 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.82 Total: 2.87 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.45 Total: 0.59 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.07 Total: -46.26 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.17 Total: -18.70 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.87 -7.64 -44.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705114099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.252 kcal (2) G-P(sol) polarization free energy of solvation -36.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds