Wall clock time and date at job start Sat Apr 11 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.99143 * 2 1 4 4 C 1.54336 * 109.78276 * 121.16088 * 2 1 3 5 5 C 1.55149 * 103.01966 * 97.49756 * 4 2 1 6 6 H 1.09006 * 111.00811 * 277.23838 * 5 4 2 7 7 N 1.46897 * 111.00731 * 153.38211 * 5 4 2 8 8 C 1.46897 * 111.00403 * 161.35024 * 7 5 4 9 9 C 1.50700 * 109.47207 * 180.02562 * 8 7 5 10 10 C 1.35142 * 127.24690 * 89.70887 * 9 8 7 11 11 C 1.37807 * 114.75763 * 179.86628 * 10 9 8 12 12 N 1.30084 * 116.88375 * 0.44474 * 11 10 9 13 13 S 1.69599 * 107.14864 * 359.76293 * 12 11 10 14 14 C 1.54912 * 101.58276 * 35.30714 * 5 4 2 15 15 N 1.47020 * 109.88225 * 238.90516 * 2 1 3 16 16 C 1.34777 * 125.64991 * 59.55939 * 15 2 1 17 17 O 1.21283 * 119.99750 * 359.71166 * 16 15 2 18 18 C 1.50702 * 119.99928 * 179.97438 * 16 15 2 19 19 S 1.80999 * 109.46903 * 179.72354 * 18 16 15 20 20 C 1.76200 * 99.99730 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00351 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99941 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00384 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46990 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47522 * 119.99735 * 24 22 20 27 27 H 1.48500 * 109.47073 * 240.00101 * 24 22 20 28 28 H 1.09003 * 109.46705 * 179.64644 * 1 2 3 29 29 H 1.08996 * 109.47048 * 299.63957 * 1 2 3 30 30 H 1.08999 * 109.47501 * 59.64683 * 1 2 3 31 31 H 1.09001 * 110.84537 * 339.03334 * 4 2 1 32 32 H 1.08994 * 110.66946 * 215.88489 * 4 2 1 33 33 H 1.00900 * 110.99963 * 37.39501 * 7 5 4 34 34 H 1.09002 * 109.47352 * 300.00239 * 8 7 5 35 35 H 1.08999 * 109.46921 * 60.00253 * 8 7 5 36 36 H 1.08002 * 122.62206 * 0.03862 * 10 9 8 37 37 H 1.08010 * 121.56119 * 180.20778 * 11 10 9 38 38 H 1.08993 * 110.36878 * 204.14992 * 14 5 4 39 39 H 1.09004 * 110.45528 * 81.87464 * 14 5 4 40 40 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 41 41 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 42 42 H 0.97002 * 120.00288 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0524 -0.7515 1.2427 5 6 2.3563 -2.1696 0.6916 6 1 1.4523 -2.7778 0.6580 7 7 3.4030 -2.8292 1.4835 8 6 3.3889 -4.2823 1.2685 9 6 4.4733 -4.9231 2.0958 10 6 4.3728 -5.3801 3.3636 11 6 5.5311 -5.9245 3.8744 12 7 6.5728 -5.9282 3.0952 13 16 6.1021 -5.2200 1.6278 14 6 2.8614 -1.8465 -0.7368 15 7 2.0300 -0.7140 -1.1839 16 6 1.7754 -0.3844 -2.4657 17 8 1.0746 0.5727 -2.7179 18 6 2.3566 -1.2088 -3.5854 19 16 1.8303 -0.5228 -5.1756 20 6 2.6301 -1.6457 -6.2728 21 1 3.2259 -2.4551 -5.8775 22 6 2.4937 -1.4907 -7.6453 23 7 1.7663 -0.5051 -8.1273 24 14 3.3410 -2.6815 -8.8087 25 1 4.0917 -3.6926 -8.0218 26 1 2.3228 -3.3629 -9.6478 27 1 4.2827 -1.9353 -9.6814 28 1 -0.3633 -1.0277 -0.0063 29 1 -0.3633 0.5082 0.8932 30 1 -0.3634 0.5193 -0.8868 31 1 1.2886 -0.7950 2.0192 32 1 2.9601 -0.2826 1.6225 33 1 3.3087 -2.6077 2.4634 34 1 2.4202 -4.6842 1.5658 35 1 3.5623 -4.4952 0.2137 36 1 3.4555 -5.3255 3.9312 37 1 5.5733 -6.3259 4.8762 38 1 2.7179 -2.7047 -1.3931 39 1 3.9126 -1.5593 -0.7133 40 1 3.4447 -1.1897 -3.5237 41 1 2.0058 -2.2372 -3.4993 42 1 1.6712 -0.3965 -9.0865 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717820791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:34 Heat of formation + Delta-G solvation = 11.383616 kcal Electronic energy + Delta-G solvation = -24124.094546 eV Core-core repulsion = 20550.039560 eV Total energy + Delta-G solvation = -3574.054986 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.19335 -39.21095 -37.78455 -35.72933 -32.43118 -32.34964 -32.06919 -29.50479 -28.71235 -26.51247 -26.00411 -25.47920 -23.80872 -22.27962 -20.92413 -20.25480 -19.14847 -18.20851 -17.71529 -16.70760 -16.52381 -16.12061 -15.54513 -15.25669 -14.92543 -14.80300 -14.43227 -14.32637 -13.95550 -13.93033 -13.63619 -13.34087 -13.08157 -13.03948 -12.62518 -12.56926 -12.48848 -12.05608 -11.77367 -11.51068 -11.35044 -11.21760 -11.06955 -11.00705 -10.83430 -10.78972 -10.75061 -9.99752 -9.80194 -9.37281 -9.10275 -9.07158 -9.02135 -8.50962 -8.22703 -6.49974 -6.21582 -3.92054 0.28617 1.13864 1.54995 2.05967 2.86424 3.06765 3.21862 3.25395 3.31136 3.50519 3.73708 4.01905 4.19985 4.22666 4.36354 4.52390 4.70558 4.76574 4.82999 4.99553 5.04857 5.08671 5.13689 5.14349 5.30606 5.31581 5.41682 5.48056 5.50402 5.56031 5.61537 5.68563 5.72934 5.89395 6.01405 6.14084 6.18944 6.26223 6.41369 6.55268 6.77097 7.60113 7.68329 8.35710 8.57282 9.23930 10.85885 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.010363 B = 0.002601 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.201733 B =10761.093008 C =13208.270359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 H 0.076 0.924 4 C -0.127 4.127 5 C 0.073 3.927 6 H 0.066 0.934 7 N -0.672 5.672 8 C 0.130 3.870 9 C -0.165 4.165 10 C -0.206 4.206 11 C 0.087 3.913 12 N -0.467 5.467 13 S 0.287 5.713 14 C 0.111 3.889 15 N -0.622 5.622 16 C 0.550 3.450 17 O -0.513 6.513 18 C -0.147 4.147 19 S -0.061 6.061 20 C -0.533 4.533 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.350 0.650 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.154 0.846 37 H 0.182 0.818 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.971 -8.971 27.083 28.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.094 0.906 4 C -0.165 4.165 5 C -0.037 4.037 6 H 0.084 0.916 7 N -0.305 5.305 8 C 0.000 4.000 9 C -0.296 4.296 10 C -0.243 4.243 11 C -0.110 4.110 12 N -0.288 5.288 13 S 0.439 5.561 14 C -0.013 4.013 15 N -0.360 5.360 16 C 0.339 3.661 17 O -0.387 6.387 18 C -0.297 4.297 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.169 0.831 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.171 0.829 37 H 0.198 0.802 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.279 -7.485 24.930 26.379 hybrid contribution -0.986 -2.180 1.237 2.694 sum 3.293 -9.666 26.166 28.088 Atomic orbital electron populations 1.22171 0.94756 1.02174 1.03134 1.21407 0.94713 0.96421 0.83921 0.90590 1.22863 1.02151 0.94366 0.97113 1.22678 0.92371 0.94794 0.93886 0.91629 1.60353 1.49513 1.07003 1.13583 1.20375 0.93351 0.87254 0.99063 1.25392 1.02249 1.03101 0.98841 1.21336 1.01461 1.05787 0.95682 1.22797 0.88507 0.98322 1.01413 1.76778 1.27247 1.21744 1.03014 1.84335 1.00341 1.52084 1.19299 1.22234 0.95730 0.89563 0.93760 1.48530 1.51873 1.30738 1.04888 1.19994 0.80062 0.84717 0.81330 1.90692 1.37205 1.28292 1.82499 1.23516 1.03831 1.02408 0.99978 1.85392 1.66732 1.40680 0.90636 1.22892 1.36173 1.16020 0.93074 0.90896 1.24995 0.95259 0.95995 0.97370 1.70030 1.37250 1.29463 1.13551 0.86118 0.79071 0.80213 0.80110 1.19584 1.20589 1.20557 0.92773 0.92091 0.90508 0.90004 0.89546 0.83116 0.92419 0.88741 0.82875 0.80162 0.90712 0.90208 0.89286 0.89459 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.05 37.16 0.34 -1.55 16 2 C 0.14 1.59 3.51 -66.95 -0.23 1.35 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.13 -0.93 5.95 -24.89 -0.15 -1.08 16 5 C 0.07 0.55 3.32 -65.57 -0.22 0.33 16 6 H 0.07 0.48 7.92 -51.93 -0.41 0.07 16 7 N -0.67 -4.23 6.36 -105.73 -0.67 -4.90 16 8 C 0.13 0.78 6.13 -4.98 -0.03 0.75 16 9 C -0.17 -1.13 6.11 -35.41 -0.22 -1.34 16 10 C -0.21 -1.19 10.17 -40.84 -0.42 -1.60 16 11 C 0.09 0.58 11.27 -18.45 -0.21 0.37 16 12 N -0.47 -4.44 12.09 28.86 0.35 -4.09 16 13 S 0.29 2.48 23.72 -107.50 -2.55 -0.07 16 14 C 0.11 1.19 6.34 -2.53 -0.02 1.17 16 15 N -0.62 -8.72 3.08 -163.01 -0.50 -9.22 16 16 C 0.55 10.47 7.65 -10.98 -0.08 10.39 16 17 O -0.51 -11.63 14.75 5.55 0.08 -11.54 16 18 C -0.15 -3.00 5.16 36.01 0.19 -2.82 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.53 -15.17 9.50 30.94 0.29 -14.87 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 24 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.15 6.74 -51.93 -0.35 0.80 16 31 H 0.08 0.46 7.83 -51.93 -0.41 0.06 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.35 1.76 8.52 -39.29 -0.33 1.42 16 34 H 0.06 0.28 8.09 -51.93 -0.42 -0.14 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.18 0.65 8.06 -52.48 -0.42 0.23 16 38 H 0.07 0.79 7.47 -51.93 -0.39 0.40 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 41 H 0.09 1.65 7.84 -51.92 -0.41 1.25 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 377.96 15.07 5.70 5.70 Total: -1.00 -34.90 377.96 -11.02 -45.91 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -6.07 Total: -1.94 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -0.85 Total: -6.92 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.09 Total: -43.64 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -4.76 Total: -3.94 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.90 -11.02 -45.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717820791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.297 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds