Wall clock time and date at job start Sat Apr 11 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.99143 * 2 1 4 4 C 1.54336 * 109.78276 * 121.16088 * 2 1 3 5 5 C 1.55149 * 103.01966 * 97.49756 * 4 2 1 6 6 H 1.09006 * 111.00811 * 277.23838 * 5 4 2 7 7 N 1.46897 * 111.00731 * 153.38211 * 5 4 2 8 8 C 1.46897 * 111.00403 * 161.35024 * 7 5 4 9 9 C 1.50700 * 109.47207 * 180.02562 * 8 7 5 10 10 C 1.35142 * 127.24690 * 89.70887 * 9 8 7 11 11 C 1.37807 * 114.75763 * 179.86628 * 10 9 8 12 12 N 1.30084 * 116.88375 * 0.44474 * 11 10 9 13 13 S 1.69599 * 107.14864 * 359.76293 * 12 11 10 14 14 C 1.54912 * 101.58276 * 35.30714 * 5 4 2 15 15 N 1.47020 * 109.88225 * 238.90516 * 2 1 3 16 16 C 1.34777 * 125.64991 * 59.55939 * 15 2 1 17 17 O 1.21283 * 119.99750 * 359.71166 * 16 15 2 18 18 C 1.50702 * 119.99928 * 179.97438 * 16 15 2 19 19 S 1.80999 * 109.46903 * 179.72354 * 18 16 15 20 20 C 1.76200 * 99.99730 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00351 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99941 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00384 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46990 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47522 * 119.99735 * 24 22 20 27 27 H 1.48500 * 109.47073 * 240.00101 * 24 22 20 28 28 H 1.09003 * 109.46705 * 179.64644 * 1 2 3 29 29 H 1.08996 * 109.47048 * 299.63957 * 1 2 3 30 30 H 1.08999 * 109.47501 * 59.64683 * 1 2 3 31 31 H 1.09001 * 110.84537 * 339.03334 * 4 2 1 32 32 H 1.08994 * 110.66946 * 215.88489 * 4 2 1 33 33 H 1.00900 * 110.99963 * 37.39501 * 7 5 4 34 34 H 1.09002 * 109.47352 * 300.00239 * 8 7 5 35 35 H 1.08999 * 109.46921 * 60.00253 * 8 7 5 36 36 H 1.08002 * 122.62206 * 0.03862 * 10 9 8 37 37 H 1.08010 * 121.56119 * 180.20778 * 11 10 9 38 38 H 1.08993 * 110.36878 * 204.14992 * 14 5 4 39 39 H 1.09004 * 110.45528 * 81.87464 * 14 5 4 40 40 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 41 41 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 42 42 H 0.97002 * 120.00288 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0524 -0.7515 1.2427 5 6 2.3563 -2.1696 0.6916 6 1 1.4523 -2.7778 0.6580 7 7 3.4030 -2.8292 1.4835 8 6 3.3889 -4.2823 1.2685 9 6 4.4733 -4.9231 2.0958 10 6 4.3728 -5.3801 3.3636 11 6 5.5311 -5.9245 3.8744 12 7 6.5728 -5.9282 3.0952 13 16 6.1021 -5.2200 1.6278 14 6 2.8614 -1.8465 -0.7368 15 7 2.0300 -0.7140 -1.1839 16 6 1.7754 -0.3844 -2.4657 17 8 1.0746 0.5727 -2.7179 18 6 2.3566 -1.2088 -3.5854 19 16 1.8303 -0.5228 -5.1756 20 6 2.6301 -1.6457 -6.2728 21 1 3.2259 -2.4551 -5.8775 22 6 2.4937 -1.4907 -7.6453 23 7 1.7663 -0.5051 -8.1273 24 14 3.3410 -2.6815 -8.8087 25 1 4.0917 -3.6926 -8.0218 26 1 2.3228 -3.3629 -9.6478 27 1 4.2827 -1.9353 -9.6814 28 1 -0.3633 -1.0277 -0.0063 29 1 -0.3633 0.5082 0.8932 30 1 -0.3634 0.5193 -0.8868 31 1 1.2886 -0.7950 2.0192 32 1 2.9601 -0.2826 1.6225 33 1 3.3087 -2.6077 2.4634 34 1 2.4202 -4.6842 1.5658 35 1 3.5623 -4.4952 0.2137 36 1 3.4555 -5.3255 3.9312 37 1 5.5733 -6.3259 4.8762 38 1 2.7179 -2.7047 -1.3931 39 1 3.9126 -1.5593 -0.7133 40 1 3.4447 -1.1897 -3.5237 41 1 2.0058 -2.2372 -3.4993 42 1 1.6712 -0.3965 -9.0865 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717820791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:34 Heat of formation + Delta-G solvation = -13.136910 kcal Electronic energy + Delta-G solvation = -24125.157836 eV Core-core repulsion = 20550.039560 eV Total energy + Delta-G solvation = -3575.118276 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.28708 -39.76184 -38.90203 -36.48890 -34.59444 -33.42785 -32.79038 -30.40686 -30.01426 -27.68129 -27.08163 -26.85195 -24.37345 -23.26543 -21.67683 -20.73342 -20.42637 -19.58597 -18.79297 -18.03581 -17.35482 -16.89551 -16.77353 -16.60314 -16.17714 -15.94884 -15.80097 -15.14190 -14.91912 -14.64140 -14.55845 -14.32326 -14.28530 -14.00956 -13.85351 -13.65337 -13.17860 -13.16632 -13.10913 -12.92982 -12.89818 -12.58229 -12.10243 -12.06364 -11.95888 -11.71442 -11.59645 -11.34076 -11.16574 -10.87142 -10.54520 -10.28971 -9.73607 -9.66444 -9.49113 -8.68550 -8.35616 -6.13993 -0.22057 0.60318 1.01310 1.23670 1.40918 1.44411 1.56465 1.57664 1.60930 2.06358 2.26343 2.98556 3.01716 3.28378 3.40158 3.58489 3.68758 3.90678 4.04662 4.08924 4.20339 4.24996 4.36104 4.37947 4.39634 4.43722 4.48465 4.62830 4.65809 4.74478 4.87950 4.91129 4.93004 5.00439 5.07436 5.10272 5.31446 5.41105 5.51829 5.71202 5.88650 6.19193 6.35372 6.43171 7.05695 7.14311 8.73899 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.010363 B = 0.002601 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.201733 B =10761.093008 C =13208.270359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 H 0.063 0.937 4 C -0.110 4.110 5 C 0.089 3.911 6 H 0.077 0.923 7 N -0.673 5.673 8 C 0.132 3.868 9 C -0.158 4.158 10 C -0.197 4.197 11 C 0.090 3.910 12 N -0.502 5.502 13 S 0.230 5.770 14 C 0.100 3.900 15 N -0.612 5.612 16 C 0.547 3.453 17 O -0.561 6.561 18 C -0.120 4.120 19 S -0.149 6.149 20 C -0.544 4.544 21 H 0.081 0.919 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.274 1.274 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.032 0.968 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.362 0.638 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.186 0.814 37 H 0.211 0.789 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.120 -11.105 29.982 32.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 H 0.082 0.918 4 C -0.148 4.148 5 C -0.021 4.021 6 H 0.095 0.905 7 N -0.308 5.308 8 C 0.001 3.999 9 C -0.289 4.289 10 C -0.233 4.233 11 C -0.107 4.107 12 N -0.323 5.323 13 S 0.382 5.618 14 C -0.023 4.023 15 N -0.347 5.347 16 C 0.335 3.665 17 O -0.439 6.439 18 C -0.271 4.271 19 S 0.078 5.922 20 C -0.692 4.692 21 H 0.099 0.901 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.180 1.180 26 H -0.198 1.198 27 H -0.199 1.199 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.052 0.948 31 H 0.131 0.869 32 H 0.113 0.887 33 H 0.183 0.817 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.203 0.797 37 H 0.228 0.772 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.454 -9.645 27.898 29.853 hybrid contribution -1.045 -1.524 0.538 1.925 sum 3.409 -11.170 28.436 30.741 Atomic orbital electron populations 1.22113 0.94684 1.02368 1.02491 1.21709 0.94878 0.96397 0.84422 0.91841 1.22812 1.03283 0.93275 0.95411 1.22477 0.92744 0.95217 0.91707 0.90487 1.60211 1.49052 1.07221 1.14307 1.20393 0.93889 0.86991 0.98579 1.25484 1.00877 1.03246 0.99269 1.21657 1.02166 1.04216 0.95237 1.23428 0.88119 0.96962 1.02211 1.76842 1.28762 1.23240 1.03442 1.84460 1.02935 1.53902 1.20466 1.22529 0.95273 0.88266 0.96217 1.48452 1.50953 1.31407 1.03932 1.19693 0.79915 0.84093 0.82769 1.90675 1.39466 1.30195 1.83540 1.23313 1.04394 1.02892 0.96548 1.85554 1.68037 1.42838 0.95733 1.23203 1.36232 1.16081 0.93660 0.90053 1.26133 0.95814 0.97900 0.99307 1.70190 1.38857 1.31578 1.14128 0.84901 0.77926 0.77701 0.77399 1.18030 1.19814 1.19933 0.92032 0.89085 0.94832 0.86942 0.88676 0.81651 0.90259 0.89604 0.79663 0.77225 0.90596 0.90250 0.88062 0.87752 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 9.05 71.98 0.65 -2.77 16 2 C 0.13 2.73 3.51 45.35 0.16 2.89 16 3 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 4 C -0.11 -1.19 5.95 31.78 0.19 -1.00 16 5 C 0.09 1.01 3.32 46.31 0.15 1.16 16 6 H 0.08 0.78 7.92 -2.38 -0.02 0.76 16 7 N -0.67 -5.95 6.36 -488.42 -3.11 -9.06 16 8 C 0.13 1.14 6.13 85.56 0.52 1.67 16 9 C -0.16 -1.74 6.11 24.97 0.15 -1.59 16 10 C -0.20 -1.56 10.17 21.45 0.22 -1.34 16 11 C 0.09 0.97 11.27 84.85 0.96 1.92 16 12 N -0.50 -9.09 12.09 -62.60 -0.76 -9.84 16 13 S 0.23 3.87 23.72 -56.49 -1.34 2.53 16 14 C 0.10 1.93 6.34 86.86 0.55 2.48 16 15 N -0.61 -16.65 3.08 -788.02 -2.43 -19.07 16 16 C 0.55 21.24 7.65 87.66 0.67 21.91 16 17 O -0.56 -26.66 14.75 -3.04 -0.04 -26.71 16 18 C -0.12 -4.99 5.16 71.24 0.37 -4.62 16 19 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 20 C -0.54 -31.40 9.50 67.95 0.65 -30.76 16 21 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 22 C 0.01 0.76 5.49 84.86 0.47 1.22 16 23 N -0.91 -56.34 13.22 21.65 0.29 -56.06 16 24 Si 1.00 43.94 29.55 68.60 2.03 45.97 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.03 1.02 6.74 -2.39 -0.02 1.01 16 31 H 0.11 0.64 7.83 -2.39 -0.02 0.63 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.36 1.94 8.52 -89.69 -0.76 1.17 16 34 H 0.08 0.40 8.09 -2.39 -0.02 0.38 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.19 0.26 8.06 -2.91 -0.02 0.23 16 37 H 0.21 0.80 8.06 -2.91 -0.02 0.77 16 38 H 0.08 1.46 7.47 -2.39 -0.02 1.45 16 39 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 41 H 0.10 3.92 7.84 -2.40 -0.02 3.90 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -81.08 377.96 -0.55 -81.63 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.27 Total: 9.02 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 5.71 Total: -8.82 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -6.01 Total: -94.04 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.04 Total: -26.71 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -4.54 SS G_CDS: -2.50 Total: -7.05 kcal Total: -81.08 -0.55 -81.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717820791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.489 kcal (2) G-P(sol) polarization free energy of solvation -81.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds