Wall clock time and date at job start Sat Apr 11 2020 06:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34781 * 119.99861 * 2 1 4 4 O 1.21737 * 119.99563 * 180.08199 * 3 2 1 5 5 C 1.46338 * 120.00088 * 0.08351 * 3 2 1 6 6 C 1.36736 * 125.43487 * 171.36477 * 5 3 2 7 7 C 1.37349 * 113.32817 * 180.02562 * 6 5 3 8 8 C 1.34202 * 115.04753 * 359.97438 * 7 6 5 9 9 F 1.35095 * 124.54120 * 180.02562 * 8 7 6 10 10 S 1.70619 * 110.91892 * 0.02562 * 8 7 6 11 11 C 1.46508 * 120.00264 * 179.97438 * 2 1 3 12 12 C 1.53932 * 113.72717 * 38.77045 * 11 2 1 13 13 N 1.48195 * 86.09911 * 221.95505 * 12 11 2 14 14 C 1.46899 * 111.06842 * 137.52188 * 13 12 11 15 15 C 1.50697 * 109.47319 * 70.57272 * 14 13 12 16 16 O 1.21294 * 119.99652 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00108 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99845 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00090 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99809 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00127 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99812 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46709 * 90.00112 * 22 20 18 24 24 H 1.48495 * 109.47111 * 210.00053 * 22 20 18 25 25 H 1.48498 * 109.47350 * 330.00368 * 22 20 18 26 26 C 1.47960 * 90.79527 * 24.60337 * 13 12 11 27 27 H 1.09004 * 109.46819 * 83.45841 * 1 2 3 28 28 H 1.08998 * 109.46882 * 203.45403 * 1 2 3 29 29 H 1.08994 * 109.47332 * 323.46142 * 1 2 3 30 30 H 1.07996 * 123.33695 * 359.97438 * 6 5 3 31 31 H 1.08000 * 122.47546 * 179.97438 * 7 6 5 32 32 H 1.08999 * 112.93760 * 170.33486 * 11 2 1 33 33 H 1.08992 * 113.76591 * 336.23605 * 12 11 2 34 34 H 1.09000 * 113.76014 * 107.60685 * 12 11 2 35 35 H 1.09008 * 109.47094 * 190.57244 * 14 13 12 36 36 H 1.09005 * 109.47091 * 310.56796 * 14 13 12 37 37 H 0.97004 * 120.00010 * 0.02562 * 17 15 14 38 38 H 0.96995 * 120.00312 * 180.02562 * 21 20 18 39 39 H 1.09004 * 113.75718 * 221.08291 * 26 13 12 40 40 H 1.09002 * 113.86078 * 89.73492 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3562 1.1672 -0.0015 5 6 1.4071 2.4346 0.0018 6 6 1.9649 3.6717 0.1693 7 6 1.0466 4.6923 0.1285 8 6 -0.2238 4.3062 -0.0666 9 9 -1.2777 5.1482 -0.1394 10 16 -0.3294 2.6094 -0.2106 11 6 2.1976 -1.2688 0.0006 12 6 1.5558 -2.3550 -0.8814 13 7 1.8639 -3.2921 0.2245 14 6 0.7407 -4.2065 0.4702 15 6 0.6273 -5.1815 -0.6733 16 8 1.4054 -5.1202 -1.6018 17 7 -0.3385 -6.1214 -0.6642 18 6 -0.4420 -7.0080 -1.7048 19 1 0.2507 -6.9535 -2.5315 20 6 -1.4381 -7.9767 -1.6957 21 7 -2.2813 -8.0427 -0.6900 22 14 -1.5786 -9.1852 -3.1132 23 1 -0.7537 -10.3857 -2.8236 24 1 -2.9978 -9.5886 -3.2810 25 1 -1.0957 -8.5423 -4.3616 26 6 1.8624 -2.1771 1.1972 27 1 -0.3633 0.1171 -1.0210 28 1 -0.3633 -0.9428 0.4090 29 1 -0.3634 0.8256 0.6118 30 1 3.0224 3.8306 0.3196 31 1 1.3263 5.7290 0.2449 32 1 3.2669 -1.1419 -0.1680 33 1 0.4888 -2.2102 -1.0499 34 1 2.1085 -2.5593 -1.7984 35 1 0.9130 -4.7527 1.3977 36 1 -0.1830 -3.6336 0.5522 37 1 -0.9610 -6.1701 0.0782 38 1 -2.9764 -8.7192 -0.6834 39 1 2.6596 -2.2396 1.9380 40 1 0.8859 -1.9789 1.6392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723825170.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:44 Heat of formation + Delta-G solvation = -20.936173 kcal Electronic energy + Delta-G solvation = -26422.920845 eV Core-core repulsion = 22281.251192 eV Total energy + Delta-G solvation = -4141.669653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.48192 -40.90209 -39.40694 -37.96749 -37.48576 -35.33144 -33.93509 -31.37104 -30.66672 -29.36401 -27.63044 -26.16955 -25.91720 -25.01349 -23.68279 -21.86333 -20.03147 -19.45312 -19.35001 -18.78158 -17.95743 -17.40142 -16.92802 -16.50523 -16.28266 -16.20170 -15.89032 -15.30485 -14.93992 -14.70568 -14.62382 -14.04841 -13.96940 -13.73092 -13.58918 -13.48155 -13.26292 -12.82566 -12.80392 -12.60069 -12.40705 -12.10702 -11.84409 -11.55624 -11.16809 -11.08142 -11.06208 -10.67661 -10.42692 -10.36203 -10.25346 -9.54846 -9.28988 -9.18377 -8.84966 -8.77873 -8.31258 -8.01155 -6.46120 -3.87008 -0.10642 0.60421 1.15292 1.77674 2.49256 2.78295 3.14936 3.24055 3.29613 3.82896 3.87523 3.92840 4.09066 4.18483 4.40462 4.47708 4.71573 4.79675 4.87405 4.88454 4.92759 5.11062 5.16489 5.27456 5.32733 5.34312 5.49370 5.59644 5.65448 5.72202 5.73075 5.85576 6.05388 6.18355 6.22014 6.50076 6.92465 7.07853 7.51229 7.74052 8.00991 8.56282 9.13540 9.48880 10.00324 10.71558 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.002160 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.243074 B =12961.201487 C =13813.968567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.600 5.600 3 C 0.593 3.407 4 O -0.522 6.522 5 C -0.267 4.267 6 C -0.031 4.031 7 C -0.189 4.189 8 C -0.048 4.048 9 F -0.103 7.103 10 S 0.251 5.749 11 C 0.115 3.885 12 C 0.013 3.987 13 N -0.447 5.447 14 C 0.013 3.987 15 C 0.442 3.558 16 O -0.578 6.578 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.013 4.013 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.134 0.866 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.097 0.903 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.760 23.530 5.889 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.332 5.332 3 C 0.381 3.619 4 O -0.399 6.399 5 C -0.387 4.387 6 C -0.063 4.063 7 C -0.220 4.220 8 C -0.184 4.184 9 F -0.082 7.082 10 S 0.517 5.483 11 C 0.012 3.988 12 C -0.117 4.117 13 N -0.170 5.170 14 C -0.119 4.119 15 C 0.227 3.773 16 O -0.461 6.461 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.144 4.144 27 H 0.093 0.907 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.181 0.819 31 H 0.171 0.829 32 H 0.151 0.849 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.064 22.057 4.997 22.640 hybrid contribution -0.707 1.065 0.217 1.297 sum 0.358 23.122 5.214 23.705 Atomic orbital electron populations 1.22045 0.80113 1.03488 1.03163 1.47751 1.06543 1.05987 1.72943 1.16850 0.86702 0.81888 0.76482 1.90864 1.12381 1.86598 1.50096 1.24483 0.96378 0.98394 1.19490 1.20462 1.01504 0.89018 0.95351 1.20280 0.90874 1.02686 1.08187 1.23006 0.87761 0.97161 1.10500 1.91524 1.53619 1.69206 1.93863 1.84248 1.03550 0.93480 1.66998 1.23368 0.98996 0.79804 0.96646 1.24334 1.00257 0.89321 0.97776 1.68418 1.37323 1.08413 1.02855 1.22454 0.92884 0.96527 1.00019 1.19651 0.84378 0.84645 0.88613 1.90534 1.43967 1.74255 1.37392 1.41868 1.28154 1.28119 1.21888 1.19696 1.14135 1.08522 1.00498 0.87908 1.25261 0.95768 0.98547 0.98332 1.69603 1.18094 1.35662 1.30950 0.85859 0.77312 0.80199 0.80944 1.20350 1.20922 1.19411 1.24527 1.02033 0.91070 0.96721 0.90694 0.88400 0.90598 0.81929 0.82882 0.84857 0.90992 0.87843 0.88880 0.92922 0.77509 0.91842 0.88515 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 7.63 59.85 0.46 0.89 16 2 N -0.60 -6.30 3.09 -176.95 -0.55 -6.85 16 3 C 0.59 6.97 7.63 -13.00 -0.10 6.87 16 4 O -0.52 -7.79 16.33 5.16 0.08 -7.70 16 5 C -0.27 -2.50 6.23 -36.87 -0.23 -2.73 16 6 C -0.03 -0.26 10.01 -40.45 -0.41 -0.66 16 7 C -0.19 -1.42 10.16 -41.33 -0.42 -1.84 16 8 C -0.05 -0.39 8.10 29.31 0.24 -0.15 16 9 F -0.10 -0.93 17.32 2.25 0.04 -0.89 16 10 S 0.25 1.81 17.88 -107.50 -1.92 -0.12 16 11 C 0.12 1.40 4.39 -69.63 -0.31 1.10 16 12 C 0.01 0.18 6.18 -2.63 -0.02 0.16 16 13 N -0.45 -7.02 5.95 -239.68 -1.43 -8.45 16 14 C 0.01 0.22 5.31 -4.98 -0.03 0.20 16 15 C 0.44 10.08 7.59 -10.99 -0.08 9.99 16 16 O -0.58 -15.26 15.13 5.55 0.08 -15.18 16 17 N -0.56 -13.86 5.29 -10.96 -0.06 -13.92 16 18 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.02 13.05 55.50 0.72 -23.30 16 22 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 C -0.01 -0.16 7.46 -2.76 -0.02 -0.18 16 27 H 0.07 0.51 7.76 -51.93 -0.40 0.11 16 28 H 0.10 0.69 6.11 -51.93 -0.32 0.38 16 29 H 0.08 0.47 4.61 -23.18 -0.11 0.37 16 30 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.13 1.81 7.22 -51.93 -0.37 1.43 16 33 H 0.07 0.97 6.33 -51.93 -0.33 0.64 16 34 H 0.10 1.72 8.10 -51.93 -0.42 1.30 16 35 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 36 H 0.05 0.75 7.70 -51.93 -0.40 0.35 16 37 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 38 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.70 6.60 -51.93 -0.34 0.36 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -32.81 350.98 -8.13 -40.94 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.22 Total: 8.64 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.15 Total: 5.83 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -1.31 Total: -52.51 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.17 Total: -22.88 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.04 Total: -0.89 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.92 Total: -0.12 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.81 -8.13 -40.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723825170.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.005 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds