Wall clock time and date at job start Sat Apr 11 2020 06:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34781 * 119.99861 * 2 1 4 4 O 1.21737 * 119.99563 * 180.08199 * 3 2 1 5 5 C 1.46338 * 120.00088 * 0.08351 * 3 2 1 6 6 C 1.36736 * 125.43487 * 171.36477 * 5 3 2 7 7 C 1.37349 * 113.32817 * 180.02562 * 6 5 3 8 8 C 1.34202 * 115.04753 * 359.97438 * 7 6 5 9 9 F 1.35095 * 124.54120 * 180.02562 * 8 7 6 10 10 S 1.70619 * 110.91892 * 0.02562 * 8 7 6 11 11 C 1.46508 * 120.00264 * 179.97438 * 2 1 3 12 12 C 1.53932 * 113.72717 * 38.77045 * 11 2 1 13 13 N 1.48195 * 86.09911 * 221.95505 * 12 11 2 14 14 C 1.46899 * 111.06842 * 137.52188 * 13 12 11 15 15 C 1.50697 * 109.47319 * 70.57272 * 14 13 12 16 16 O 1.21294 * 119.99652 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00108 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99845 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00090 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99809 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00127 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99812 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46709 * 90.00112 * 22 20 18 24 24 H 1.48495 * 109.47111 * 210.00053 * 22 20 18 25 25 H 1.48498 * 109.47350 * 330.00368 * 22 20 18 26 26 C 1.47960 * 90.79527 * 24.60337 * 13 12 11 27 27 H 1.09004 * 109.46819 * 83.45841 * 1 2 3 28 28 H 1.08998 * 109.46882 * 203.45403 * 1 2 3 29 29 H 1.08994 * 109.47332 * 323.46142 * 1 2 3 30 30 H 1.07996 * 123.33695 * 359.97438 * 6 5 3 31 31 H 1.08000 * 122.47546 * 179.97438 * 7 6 5 32 32 H 1.08999 * 112.93760 * 170.33486 * 11 2 1 33 33 H 1.08992 * 113.76591 * 336.23605 * 12 11 2 34 34 H 1.09000 * 113.76014 * 107.60685 * 12 11 2 35 35 H 1.09008 * 109.47094 * 190.57244 * 14 13 12 36 36 H 1.09005 * 109.47091 * 310.56796 * 14 13 12 37 37 H 0.97004 * 120.00010 * 0.02562 * 17 15 14 38 38 H 0.96995 * 120.00312 * 180.02562 * 21 20 18 39 39 H 1.09004 * 113.75718 * 221.08291 * 26 13 12 40 40 H 1.09002 * 113.86078 * 89.73492 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3562 1.1672 -0.0015 5 6 1.4071 2.4346 0.0018 6 6 1.9649 3.6717 0.1693 7 6 1.0466 4.6923 0.1285 8 6 -0.2238 4.3062 -0.0666 9 9 -1.2777 5.1482 -0.1394 10 16 -0.3294 2.6094 -0.2106 11 6 2.1976 -1.2688 0.0006 12 6 1.5558 -2.3550 -0.8814 13 7 1.8639 -3.2921 0.2245 14 6 0.7407 -4.2065 0.4702 15 6 0.6273 -5.1815 -0.6733 16 8 1.4054 -5.1202 -1.6018 17 7 -0.3385 -6.1214 -0.6642 18 6 -0.4420 -7.0080 -1.7048 19 1 0.2507 -6.9535 -2.5315 20 6 -1.4381 -7.9767 -1.6957 21 7 -2.2813 -8.0427 -0.6900 22 14 -1.5786 -9.1852 -3.1132 23 1 -0.7537 -10.3857 -2.8236 24 1 -2.9978 -9.5886 -3.2810 25 1 -1.0957 -8.5423 -4.3616 26 6 1.8624 -2.1771 1.1972 27 1 -0.3633 0.1171 -1.0210 28 1 -0.3633 -0.9428 0.4090 29 1 -0.3634 0.8256 0.6118 30 1 3.0224 3.8306 0.3196 31 1 1.3263 5.7290 0.2449 32 1 3.2669 -1.1419 -0.1680 33 1 0.4888 -2.2102 -1.0499 34 1 2.1085 -2.5593 -1.7984 35 1 0.9130 -4.7527 1.3977 36 1 -0.1830 -3.6336 0.5522 37 1 -0.9610 -6.1701 0.0782 38 1 -2.9764 -8.7192 -0.6834 39 1 2.6596 -2.2396 1.9380 40 1 0.8859 -1.9789 1.6392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723825170.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:43 Heat of formation + Delta-G solvation = -45.840491 kcal Electronic energy + Delta-G solvation = -26424.000777 eV Core-core repulsion = 22281.251192 eV Total energy + Delta-G solvation = -4142.749586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.13609 -41.91495 -40.52198 -39.46233 -38.35006 -36.31430 -35.86166 -33.30037 -31.80627 -30.26102 -28.40837 -27.44516 -27.06693 -26.17778 -24.87171 -22.77603 -21.02976 -20.77194 -20.34204 -19.92928 -19.54570 -18.28946 -17.83583 -17.69797 -17.20092 -17.09802 -16.85223 -16.54076 -16.37797 -15.89461 -15.63758 -15.55174 -15.27905 -14.92249 -14.47039 -14.28096 -14.11155 -14.01107 -13.67934 -13.52749 -13.51570 -13.44234 -13.15215 -13.03748 -12.86731 -12.41563 -12.19990 -12.12891 -11.83758 -11.65459 -11.49479 -11.28929 -10.33127 -10.07465 -10.00318 -9.80588 -9.75643 -9.56745 -8.46226 -5.94328 -0.78222 -0.01399 0.52192 1.10875 1.38007 1.42426 1.54268 1.65057 1.97051 2.06079 2.29399 2.82042 3.20586 3.23309 3.25434 3.34080 3.50519 3.71290 3.88919 4.08343 4.17018 4.24245 4.28804 4.31156 4.33652 4.42029 4.54857 4.60970 4.71826 4.75168 4.80234 4.88802 4.96935 5.13310 5.26878 5.33170 5.42293 5.85339 6.05083 6.11810 6.61248 6.87005 7.14027 7.57300 8.13388 8.71037 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.019992 B = 0.002160 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.243074 B =12961.201487 C =13813.968567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.597 5.597 3 C 0.591 3.409 4 O -0.564 6.564 5 C -0.291 4.291 6 C -0.028 4.028 7 C -0.187 4.187 8 C -0.061 4.061 9 F -0.108 7.108 10 S 0.300 5.700 11 C 0.127 3.873 12 C 0.012 3.988 13 N -0.478 5.478 14 C 0.026 3.974 15 C 0.440 3.560 16 O -0.620 6.620 17 N -0.573 5.573 18 C -0.331 4.331 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.989 3.011 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.002 3.998 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.166 0.834 31 H 0.172 0.828 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.105 0.895 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 24.460 6.944 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.328 5.328 3 C 0.380 3.620 4 O -0.445 6.445 5 C -0.412 4.412 6 C -0.061 4.061 7 C -0.218 4.218 8 C -0.197 4.197 9 F -0.087 7.087 10 S 0.567 5.433 11 C 0.023 3.977 12 C -0.118 4.118 13 N -0.202 5.202 14 C -0.106 4.106 15 C 0.227 3.773 16 O -0.506 6.506 17 N -0.211 5.211 18 C -0.461 4.461 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.813 3.187 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.127 4.127 27 H 0.103 0.897 28 H 0.129 0.871 29 H 0.110 0.890 30 H 0.184 0.816 31 H 0.189 0.811 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.603 22.992 6.079 23.790 hybrid contribution -0.192 0.844 -0.119 0.874 sum -0.795 23.837 5.960 24.583 Atomic orbital electron populations 1.22314 0.78109 1.04879 1.04340 1.47744 1.07717 1.05020 1.72304 1.17155 0.86372 0.82758 0.75698 1.90837 1.14224 1.87268 1.52164 1.24348 0.98079 0.97568 1.21195 1.20599 1.01969 0.88948 0.94629 1.20426 0.90423 1.03458 1.07519 1.23248 0.87940 0.97808 1.10724 1.91516 1.53805 1.69460 1.93931 1.83965 1.01019 0.92447 1.65878 1.22990 0.98017 0.80329 0.96389 1.24268 1.00654 0.90162 0.96697 1.68385 1.37323 1.09878 1.04582 1.22360 0.94975 0.95779 0.97438 1.20764 0.82620 0.84455 0.89463 1.90511 1.45189 1.75273 1.39594 1.41924 1.29033 1.28505 1.21594 1.19615 1.14785 1.10507 1.01190 0.90535 1.25975 0.95036 0.99521 1.00575 1.69653 1.18231 1.36173 1.31919 0.84980 0.77847 0.77985 0.77860 1.19864 1.19461 1.19872 1.24552 1.03893 0.88379 0.95896 0.89723 0.87135 0.89009 0.81616 0.81077 0.86802 0.89766 0.91121 0.87048 0.89500 0.76895 0.91305 0.87626 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 7.63 127.77 0.97 1.57 16 2 N -0.60 -11.71 3.09 -831.93 -2.57 -14.29 16 3 C 0.59 13.51 7.63 86.35 0.66 14.17 16 4 O -0.56 -17.13 16.33 -4.47 -0.07 -17.20 16 5 C -0.29 -5.07 6.23 24.03 0.15 -4.92 16 6 C -0.03 -0.44 10.01 21.71 0.22 -0.22 16 7 C -0.19 -2.46 10.16 21.14 0.21 -2.25 16 8 C -0.06 -0.87 8.10 66.90 0.54 -0.33 16 9 F -0.11 -1.73 17.32 44.97 0.78 -0.95 16 10 S 0.30 3.61 17.88 -56.49 -1.01 2.60 16 11 C 0.13 3.00 4.39 46.55 0.20 3.21 16 12 C 0.01 0.34 6.18 86.36 0.53 0.87 16 13 N -0.48 -14.46 5.95 -912.22 -5.42 -19.88 16 14 C 0.03 0.82 5.31 85.56 0.45 1.27 16 15 C 0.44 20.07 7.59 87.66 0.67 20.73 16 16 O -0.62 -33.63 15.13 -3.07 -0.05 -33.67 16 17 N -0.57 -28.32 5.29 -306.99 -1.62 -29.94 16 18 C -0.33 -18.42 9.68 84.04 0.81 -17.60 16 19 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 20 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 21 N -0.92 -48.28 13.05 21.66 0.28 -48.00 16 22 Si 0.99 42.26 29.55 68.60 2.03 44.29 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 C 0.00 0.04 7.46 86.41 0.65 0.68 16 27 H 0.08 0.93 7.76 -2.38 -0.02 0.91 16 28 H 0.11 1.14 6.11 -2.39 -0.01 1.13 16 29 H 0.09 0.85 4.61 -20.67 -0.10 0.76 16 30 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.11 3.18 7.22 -2.39 -0.02 3.16 16 33 H 0.08 2.16 6.33 -2.39 -0.02 2.14 16 34 H 0.07 2.47 8.10 -2.39 -0.02 2.45 16 35 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 36 H 0.09 2.14 7.70 -2.38 -0.02 2.12 16 37 H 0.40 18.42 7.90 -92.71 -0.73 17.69 16 38 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 39 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.10 1.54 6.60 -2.39 -0.02 1.53 16 Total: -1.00 -72.72 350.98 -0.82 -73.54 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.30 Total: 26.42 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 6.54 Total: 17.08 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -9.34 Total: -112.11 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -0.12 Total: -50.88 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.78 Total: -0.95 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.01 Total: 2.60 kcal Total: -72.72 -0.82 -73.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723825170.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.703 kcal (2) G-P(sol) polarization free energy of solvation -72.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds