Wall clock time and date at job start Sat Apr 11 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 119.99771 * 2 1 4 4 O 1.21281 * 119.99390 * 179.97438 * 3 2 1 5 5 C 1.50692 * 120.00244 * 359.97438 * 3 2 1 6 6 S 1.81008 * 109.47074 * 180.02562 * 5 3 2 7 7 C 1.76203 * 99.99900 * 179.97438 * 6 5 3 8 8 H 1.08004 * 119.99925 * 359.97438 * 7 6 5 9 9 C 1.38800 * 119.99684 * 180.02562 * 7 6 5 10 10 N 1.31634 * 119.99427 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00341 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47132 * 90.00025 * 11 9 7 13 13 H 1.48498 * 109.47215 * 210.00171 * 11 9 7 14 14 H 1.48505 * 109.47160 * 330.00335 * 11 9 7 15 15 C 1.46495 * 119.99947 * 179.97438 * 2 1 3 16 16 C 1.53780 * 113.61485 * 60.00211 * 15 2 1 17 17 C 1.53777 * 87.08301 * 220.01777 * 16 15 2 18 18 N 1.46904 * 113.61233 * 139.98352 * 17 16 15 19 19 C 1.46899 * 111.00029 * 156.53100 * 18 17 16 20 20 C 1.50703 * 109.47107 * 179.97438 * 19 18 17 21 21 C 1.33640 * 122.74995 * 94.73055 * 20 19 18 22 22 S 1.76201 * 107.92149 * 179.97438 * 21 20 19 23 23 C 1.70975 * 90.28455 * 0.27810 * 22 21 20 24 24 N 1.29024 * 110.16825 * 359.83570 * 23 22 21 25 25 C 1.53775 * 87.17159 * 25.39091 * 17 16 15 26 26 H 1.09000 * 109.47466 * 270.00624 * 1 2 3 27 27 H 1.09005 * 109.46753 * 30.00570 * 1 2 3 28 28 H 1.09004 * 109.47104 * 149.99951 * 1 2 3 29 29 H 1.09001 * 109.47414 * 299.99643 * 5 3 2 30 30 H 1.09001 * 109.47573 * 59.99936 * 5 3 2 31 31 H 0.97002 * 119.99349 * 180.02562 * 10 9 7 32 32 H 1.08998 * 112.90941 * 191.25268 * 15 2 1 33 33 H 1.09005 * 113.61314 * 105.46659 * 16 15 2 34 34 H 1.09001 * 113.61434 * 334.57099 * 16 15 2 35 35 H 1.08998 * 113.61906 * 270.79643 * 17 16 15 36 36 H 1.00902 * 111.00190 * 32.56801 * 18 17 16 37 37 H 1.09002 * 109.47043 * 299.99792 * 19 18 17 38 38 H 1.09001 * 109.47354 * 59.99854 * 19 18 17 39 39 H 1.08002 * 126.03629 * 0.04004 * 21 20 19 40 40 H 1.07995 * 124.91298 * 179.84412 * 23 22 21 41 41 H 1.09004 * 113.61332 * 89.15828 * 25 17 16 42 42 H 1.09005 * 113.61343 * 220.05745 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5616 3.8480 -0.0012 7 6 1.4415 5.2082 -0.0026 8 1 0.3762 5.0305 -0.0032 9 6 1.9283 6.5081 -0.0039 10 7 1.0915 7.5242 -0.0044 11 14 3.7708 6.8155 -0.0035 12 1 4.2596 6.8953 -1.4034 13 1 4.0593 8.0937 0.6952 14 1 4.4583 5.7017 0.6981 15 6 2.1975 -1.2687 0.0006 16 6 1.8954 -2.1550 -1.2193 17 6 1.9129 -3.3526 -0.2549 18 7 0.8688 -4.3477 -0.5335 19 6 1.2424 -5.6655 -0.0025 20 6 0.1494 -6.6577 -0.3062 21 6 0.1713 -7.4508 -1.3815 22 16 -1.2828 -8.4455 -1.3513 23 6 -1.7795 -7.6902 0.0999 24 7 -0.9094 -6.8097 0.4637 25 6 1.5384 -2.3625 0.8605 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5140 28 1 -0.3633 -0.8900 -0.5139 29 1 0.7591 2.5299 -0.8908 30 1 0.7583 2.5303 0.8891 31 1 1.4317 8.4326 -0.0057 32 1 3.2624 -1.1437 0.1964 33 1 2.6998 -2.1746 -1.9546 34 1 0.9183 -1.9669 -1.6644 35 1 2.8997 -3.7983 -0.1300 36 1 0.6721 -4.3985 -1.5218 37 1 2.1717 -5.9944 -0.4676 38 1 1.3806 -5.5966 1.0765 39 1 0.9443 -7.4780 -2.1353 40 1 -2.6898 -7.9174 0.6347 41 1 0.4635 -2.2313 0.9851 42 1 2.0550 -2.5495 1.8019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725774440.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:53 Heat of formation + Delta-G solvation = 43.639881 kcal Electronic energy + Delta-G solvation = -23655.144703 eV Core-core repulsion = 20082.488454 eV Total energy + Delta-G solvation = -3572.656249 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.49764 -40.11170 -38.35445 -35.43128 -33.78439 -32.42005 -30.84725 -29.24213 -27.16800 -26.70347 -25.86678 -25.60635 -24.77416 -23.07012 -20.21563 -19.82761 -19.06519 -18.58784 -17.65383 -17.07091 -16.30551 -16.19702 -15.78647 -15.66431 -15.26282 -15.04125 -14.89789 -14.16736 -13.83248 -13.76666 -13.70190 -13.35936 -13.22517 -12.96044 -12.77412 -12.68573 -12.25979 -12.21420 -11.91145 -11.75174 -11.43999 -11.23502 -10.99621 -10.97619 -10.75363 -10.53319 -10.09365 -9.94506 -9.83626 -9.44003 -9.39286 -8.98645 -8.85156 -8.50483 -8.46349 -6.89803 -6.27231 -3.98677 0.22847 0.91374 1.24876 2.28588 2.74662 2.94835 3.22187 3.34458 3.52085 3.60749 3.70611 3.96245 4.23888 4.34715 4.40708 4.55066 4.62714 4.66972 4.74261 4.74899 4.81563 5.01717 5.07465 5.11876 5.19521 5.28524 5.38302 5.44579 5.56048 5.59704 5.62618 5.73366 5.76032 5.83593 5.85994 6.04660 6.05168 6.64174 6.66555 6.91179 7.29559 7.50962 7.95895 8.43363 8.47355 9.19085 10.81984 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.037942 B = 0.001650 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.783019 B =16963.267679 C =17357.051873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.532 3.468 4 O -0.521 6.521 5 C -0.121 4.121 6 S -0.145 6.145 7 C -0.520 4.520 8 H 0.088 0.912 9 C 0.095 3.905 10 N -0.880 5.880 11 Si 0.857 3.143 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.235 1.235 15 C 0.126 3.874 16 C -0.153 4.153 17 C 0.062 3.938 18 N -0.667 5.667 19 C 0.132 3.868 20 C 0.072 3.928 21 C -0.254 4.254 22 S 0.115 5.885 23 C 0.023 3.977 24 N -0.452 5.452 25 C -0.134 4.134 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.270 0.730 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.342 0.658 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.176 0.824 40 H 0.200 0.800 41 H 0.097 0.903 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.903 -34.766 -2.841 35.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.344 5.344 3 C 0.320 3.680 4 O -0.396 6.396 5 C -0.271 4.271 6 S 0.082 5.918 7 C -0.668 4.668 8 H 0.106 0.894 9 C -0.113 4.113 10 N -0.517 5.517 11 Si 0.682 3.318 12 H -0.192 1.192 13 H -0.200 1.200 14 H -0.159 1.159 15 C 0.021 3.979 16 C -0.193 4.193 17 C -0.048 4.048 18 N -0.298 5.298 19 C 0.001 3.999 20 C -0.061 4.061 21 C -0.394 4.394 22 S 0.367 5.633 23 C -0.275 4.275 24 N -0.165 5.165 25 C -0.173 4.173 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.161 0.839 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.194 0.806 40 H 0.217 0.783 41 H 0.115 0.885 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.066 -34.864 -2.411 35.183 hybrid contribution 0.290 0.635 -0.516 0.869 sum -3.776 -34.229 -2.928 34.561 Atomic orbital electron populations 1.21776 0.79519 1.03249 1.02038 1.47732 1.06763 1.05120 1.74750 1.20332 0.87922 0.84699 0.75014 1.90676 1.13770 1.86898 1.48219 1.23319 1.03037 0.95150 1.05605 1.84774 1.12067 0.97584 1.97414 1.22317 0.94885 0.90900 1.58690 0.89398 1.24713 0.98527 0.94873 0.93201 1.69945 1.34768 0.98857 1.48144 0.86731 0.85396 0.79794 0.79907 1.19243 1.19960 1.15924 1.22338 0.98091 0.81581 0.95896 1.23698 1.03040 0.94969 0.97547 1.22827 0.93332 0.90636 0.98016 1.60520 1.42932 1.05381 1.21014 1.20475 0.91306 0.86161 1.01976 1.20239 0.95517 0.98725 0.91584 1.26930 1.03902 1.03714 1.04830 1.84118 1.15428 1.38979 1.24781 1.28491 1.03455 0.97069 0.98508 1.66127 1.02046 1.17070 1.31301 1.23550 1.02483 0.93873 0.97370 0.92495 0.90601 0.90929 0.88552 0.88481 0.91973 0.86347 0.90913 0.88906 0.90481 0.83910 0.93327 0.89021 0.80648 0.78335 0.88489 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 8.85 59.85 0.53 1.36 16 2 N -0.61 -8.40 3.08 -172.90 -0.53 -8.93 16 3 C 0.53 9.83 7.69 -10.99 -0.08 9.75 16 4 O -0.52 -11.43 15.35 5.56 0.09 -11.34 16 5 C -0.12 -2.40 4.71 36.00 0.17 -2.23 16 6 S -0.14 -3.73 18.55 -107.50 -1.99 -5.72 16 7 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 8 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 9 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 10 N -0.88 -26.70 13.97 55.49 0.78 -25.92 16 11 Si 0.86 21.96 27.74 -169.99 -4.71 17.25 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 15 C 0.13 1.46 4.20 -67.03 -0.28 1.18 16 16 C -0.15 -1.39 7.20 -25.92 -0.19 -1.57 16 17 C 0.06 0.49 4.12 -66.90 -0.28 0.21 16 18 N -0.67 -5.03 6.54 -107.13 -0.70 -5.74 16 19 C 0.13 0.93 5.98 -4.98 -0.03 0.90 16 20 C 0.07 0.56 6.25 -84.22 -0.53 0.03 16 21 C -0.25 -1.49 11.12 29.12 0.32 -1.17 16 22 S 0.11 0.57 23.22 -107.50 -2.50 -1.93 16 23 C 0.02 0.15 12.23 51.58 0.63 0.78 16 24 N -0.45 -4.08 10.53 -11.90 -0.13 -4.20 16 25 C -0.13 -1.27 7.32 -25.83 -0.19 -1.46 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.82 6.44 -51.93 -0.33 0.49 16 28 H 0.07 0.64 6.34 -51.93 -0.33 0.31 16 29 H 0.10 1.78 7.40 -51.91 -0.38 1.40 16 30 H 0.10 1.82 8.11 -51.92 -0.42 1.40 16 31 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.12 1.58 7.24 -51.93 -0.38 1.20 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.83 6.92 -51.93 -0.36 0.47 16 35 H 0.08 0.55 7.88 -51.93 -0.41 0.14 16 36 H 0.34 2.32 8.56 -39.29 -0.34 1.99 16 37 H 0.05 0.26 8.09 -51.93 -0.42 -0.16 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.20 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.10 0.97 6.74 -51.93 -0.35 0.62 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -35.22 373.88 -9.61 -44.82 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.83 Total: 0.39 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 0.29 Total: -4.31 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.58 Total: -44.79 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.25 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -4.49 Total: -7.65 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.22 -9.61 -44.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725774440.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.464 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds