Wall clock time and date at job start Sat Apr 11 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 119.99771 * 2 1 4 4 O 1.21281 * 119.99390 * 179.97438 * 3 2 1 5 5 C 1.50692 * 120.00244 * 359.97438 * 3 2 1 6 6 S 1.81008 * 109.47074 * 180.02562 * 5 3 2 7 7 C 1.76203 * 99.99900 * 179.97438 * 6 5 3 8 8 H 1.08004 * 119.99925 * 359.97438 * 7 6 5 9 9 C 1.38800 * 119.99684 * 180.02562 * 7 6 5 10 10 N 1.31634 * 119.99427 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00341 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47132 * 90.00025 * 11 9 7 13 13 H 1.48498 * 109.47215 * 210.00171 * 11 9 7 14 14 H 1.48505 * 109.47160 * 330.00335 * 11 9 7 15 15 C 1.46495 * 119.99947 * 179.97438 * 2 1 3 16 16 C 1.53780 * 113.61485 * 60.00211 * 15 2 1 17 17 C 1.53777 * 87.08301 * 220.01777 * 16 15 2 18 18 N 1.46904 * 113.61233 * 139.98352 * 17 16 15 19 19 C 1.46899 * 111.00029 * 156.53100 * 18 17 16 20 20 C 1.50703 * 109.47107 * 179.97438 * 19 18 17 21 21 C 1.33640 * 122.74995 * 94.73055 * 20 19 18 22 22 S 1.76201 * 107.92149 * 179.97438 * 21 20 19 23 23 C 1.70975 * 90.28455 * 0.27810 * 22 21 20 24 24 N 1.29024 * 110.16825 * 359.83570 * 23 22 21 25 25 C 1.53775 * 87.17159 * 25.39091 * 17 16 15 26 26 H 1.09000 * 109.47466 * 270.00624 * 1 2 3 27 27 H 1.09005 * 109.46753 * 30.00570 * 1 2 3 28 28 H 1.09004 * 109.47104 * 149.99951 * 1 2 3 29 29 H 1.09001 * 109.47414 * 299.99643 * 5 3 2 30 30 H 1.09001 * 109.47573 * 59.99936 * 5 3 2 31 31 H 0.97002 * 119.99349 * 180.02562 * 10 9 7 32 32 H 1.08998 * 112.90941 * 191.25268 * 15 2 1 33 33 H 1.09005 * 113.61314 * 105.46659 * 16 15 2 34 34 H 1.09001 * 113.61434 * 334.57099 * 16 15 2 35 35 H 1.08998 * 113.61906 * 270.79643 * 17 16 15 36 36 H 1.00902 * 111.00190 * 32.56801 * 18 17 16 37 37 H 1.09002 * 109.47043 * 299.99792 * 19 18 17 38 38 H 1.09001 * 109.47354 * 59.99854 * 19 18 17 39 39 H 1.08002 * 126.03629 * 0.04004 * 21 20 19 40 40 H 1.07995 * 124.91298 * 179.84412 * 23 22 21 41 41 H 1.09004 * 113.61332 * 89.15828 * 25 17 16 42 42 H 1.09005 * 113.61343 * 220.05745 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5616 3.8480 -0.0012 7 6 1.4415 5.2082 -0.0026 8 1 0.3762 5.0305 -0.0032 9 6 1.9283 6.5081 -0.0039 10 7 1.0915 7.5242 -0.0044 11 14 3.7708 6.8155 -0.0035 12 1 4.2596 6.8953 -1.4034 13 1 4.0593 8.0937 0.6952 14 1 4.4583 5.7017 0.6981 15 6 2.1975 -1.2687 0.0006 16 6 1.8954 -2.1550 -1.2193 17 6 1.9129 -3.3526 -0.2549 18 7 0.8688 -4.3477 -0.5335 19 6 1.2424 -5.6655 -0.0025 20 6 0.1494 -6.6577 -0.3062 21 6 0.1713 -7.4508 -1.3815 22 16 -1.2828 -8.4455 -1.3513 23 6 -1.7795 -7.6902 0.0999 24 7 -0.9094 -6.8097 0.4637 25 6 1.5384 -2.3625 0.8605 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5140 28 1 -0.3633 -0.8900 -0.5139 29 1 0.7591 2.5299 -0.8908 30 1 0.7583 2.5303 0.8891 31 1 1.4317 8.4326 -0.0057 32 1 3.2624 -1.1437 0.1964 33 1 2.6998 -2.1746 -1.9546 34 1 0.9183 -1.9669 -1.6644 35 1 2.8997 -3.7983 -0.1300 36 1 0.6721 -4.3985 -1.5218 37 1 2.1717 -5.9944 -0.4676 38 1 1.3806 -5.5966 1.0765 39 1 0.9443 -7.4780 -2.1353 40 1 -2.6898 -7.9174 0.6347 41 1 0.4635 -2.2313 0.9851 42 1 2.0550 -2.5495 1.8019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725774440.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:52 Heat of formation + Delta-G solvation = 18.337198 kcal Electronic energy + Delta-G solvation = -23656.241910 eV Core-core repulsion = 20082.488454 eV Total energy + Delta-G solvation = -3573.753456 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41489 -40.74931 -39.46809 -36.36659 -34.69859 -34.64746 -31.48202 -30.61415 -28.05902 -27.86728 -27.34615 -26.59686 -25.35212 -23.94521 -21.09221 -20.53607 -20.04994 -19.60019 -19.04657 -18.32159 -17.36076 -17.08519 -16.88856 -16.75576 -16.40170 -16.19308 -15.83224 -15.60890 -14.97348 -14.79186 -14.52511 -14.32136 -14.21334 -14.13029 -13.71297 -13.61812 -13.37454 -13.30731 -13.17104 -13.03559 -12.89113 -12.70244 -12.26679 -12.13172 -11.86382 -11.72560 -11.50383 -11.17295 -10.90396 -10.55303 -10.53206 -10.38383 -9.83323 -9.64452 -9.38832 -9.00652 -8.51717 -6.22821 -0.19041 0.53001 0.82918 0.97720 1.30979 1.45928 1.50912 1.54331 1.79760 2.09882 2.25093 2.68426 2.86401 3.25210 3.38961 3.49196 3.60767 3.68432 3.89168 4.00031 4.14362 4.14540 4.25184 4.28669 4.43305 4.43451 4.50012 4.61059 4.65110 4.75539 4.80967 4.84039 4.92672 5.01921 5.06385 5.17458 5.21996 5.61022 5.70643 6.04408 6.10983 6.28120 6.39554 6.85874 6.93371 7.08863 8.60636 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.037942 B = 0.001650 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.783019 B =16963.267679 C =17357.051873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.595 5.595 3 C 0.532 3.468 4 O -0.564 6.564 5 C -0.106 4.106 6 S -0.177 6.177 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.046 3.954 10 N -0.916 5.916 11 Si 0.915 3.085 12 H -0.262 1.262 13 H -0.258 1.258 14 H -0.238 1.238 15 C 0.110 3.890 16 C -0.141 4.141 17 C 0.078 3.922 18 N -0.672 5.672 19 C 0.135 3.865 20 C 0.050 3.950 21 C -0.255 4.255 22 S 0.150 5.850 23 C 0.012 3.988 24 N -0.493 5.493 25 C -0.126 4.126 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.277 0.723 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.349 0.651 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.196 0.804 40 H 0.221 0.779 41 H 0.097 0.903 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 -37.194 -3.598 37.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.328 5.328 3 C 0.319 3.681 4 O -0.443 6.443 5 C -0.257 4.257 6 S 0.049 5.951 7 C -0.677 4.677 8 H 0.080 0.920 9 C -0.159 4.159 10 N -0.554 5.554 11 Si 0.736 3.264 12 H -0.186 1.186 13 H -0.182 1.182 14 H -0.162 1.162 15 C 0.006 3.994 16 C -0.180 4.180 17 C -0.032 4.032 18 N -0.304 5.304 19 C 0.004 3.996 20 C -0.082 4.082 21 C -0.395 4.395 22 S 0.403 5.597 23 C -0.286 4.286 24 N -0.207 5.207 25 C -0.166 4.166 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.168 0.832 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.213 0.787 40 H 0.237 0.763 41 H 0.115 0.885 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.289 -37.339 -3.173 37.718 hybrid contribution 0.173 1.191 -0.297 1.239 sum -4.116 -36.148 -3.470 36.547 Atomic orbital electron populations 1.22030 0.77362 1.04552 1.03229 1.47753 1.08083 1.04420 1.72500 1.20054 0.87298 0.85380 0.75354 1.90658 1.15321 1.87469 1.50857 1.23295 1.01753 0.93667 1.06962 1.84692 1.13864 0.98942 1.97566 1.22451 0.94370 0.92503 1.58334 0.91970 1.25557 1.02770 0.94733 0.92861 1.70019 1.36752 0.99514 1.49090 0.85866 0.80189 0.80065 0.80238 1.18640 1.18239 1.16197 1.22568 0.97176 0.80990 0.98698 1.23611 1.03364 0.94320 0.96702 1.22657 0.93926 0.90324 0.96342 1.60440 1.42724 1.05685 1.21550 1.20438 0.92053 0.85871 1.01224 1.20341 0.95749 0.99711 0.92387 1.27221 1.04650 1.03074 1.04585 1.83992 1.14430 1.37838 1.23425 1.28898 1.03766 0.96619 0.99275 1.66135 1.03147 1.18697 1.32739 1.23502 1.02121 0.93280 0.97650 0.91341 0.90559 0.88433 0.87043 0.87256 0.91356 0.88352 0.90659 0.88291 0.89471 0.83169 0.91553 0.90443 0.78694 0.76311 0.88499 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 8.85 127.77 1.13 2.47 16 2 N -0.60 -15.61 3.08 -819.33 -2.53 -18.14 16 3 C 0.53 19.36 7.69 87.65 0.67 20.04 16 4 O -0.56 -24.94 15.35 -3.03 -0.05 -24.98 16 5 C -0.11 -4.17 4.71 71.23 0.34 -3.83 16 6 S -0.18 -9.16 18.55 -56.49 -1.05 -10.21 16 7 C -0.53 -31.21 10.04 67.95 0.68 -30.53 16 8 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 9 C 0.05 2.74 5.50 84.86 0.47 3.21 16 10 N -0.92 -56.10 13.97 21.65 0.30 -55.80 16 11 Si 0.91 45.48 27.74 68.60 1.90 47.38 16 12 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.24 -11.87 6.74 99.48 0.67 -11.20 16 15 C 0.11 2.42 4.20 45.58 0.19 2.61 16 16 C -0.14 -2.25 7.20 31.12 0.22 -2.03 16 17 C 0.08 1.06 4.12 45.44 0.19 1.24 16 18 N -0.67 -8.68 6.54 -492.86 -3.22 -11.90 16 19 C 0.14 1.68 5.98 85.56 0.51 2.19 16 20 C 0.05 0.70 6.25 41.52 0.26 0.96 16 21 C -0.26 -2.44 11.12 66.78 0.74 -1.70 16 22 S 0.15 1.18 23.22 -56.49 -1.31 -0.13 16 23 C 0.01 0.13 12.23 130.65 1.60 1.73 16 24 N -0.49 -8.36 10.53 -191.55 -2.02 -10.38 16 25 C -0.13 -2.19 7.32 31.18 0.23 -1.96 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.49 6.44 -2.38 -0.02 1.47 16 28 H 0.10 1.42 6.34 -2.38 -0.02 1.41 16 29 H 0.11 4.03 7.40 -2.40 -0.02 4.01 16 30 H 0.11 4.02 8.11 -2.39 -0.02 4.00 16 31 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.10 2.62 7.24 -2.39 -0.02 2.60 16 33 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.10 1.49 6.92 -2.39 -0.02 1.47 16 35 H 0.09 1.05 7.88 -2.39 -0.02 1.03 16 36 H 0.35 3.84 8.56 -89.69 -0.77 3.07 16 37 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.22 1.08 8.06 -2.91 -0.02 1.06 16 41 H 0.10 1.72 6.74 -2.38 -0.02 1.70 16 42 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -76.99 373.88 -0.49 -77.48 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.24 Total: 12.26 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 7.23 Total: -5.58 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -7.46 Total: -96.22 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.98 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.90 Total: 47.38 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -2.36 Total: -10.34 kcal Total: -76.99 -0.49 -77.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725774440.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.819 kcal (2) G-P(sol) polarization free energy of solvation -76.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds