Wall clock time and date at job start Sat Apr 11 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33642 * 126.03395 * 2 1 4 4 N 1.31780 * 114.50011 * 179.97438 * 3 2 1 5 5 C 1.29029 * 117.12162 * 0.02562 * 4 3 2 6 6 C 1.50707 * 124.91300 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.46819 * 90.02190 * 6 5 4 8 8 C 1.46899 * 110.99736 * 179.97438 * 7 6 5 9 9 H 1.09000 * 112.90940 * 23.75151 * 8 7 6 10 10 C 1.53786 * 113.61541 * 154.99883 * 8 7 6 11 11 C 1.53781 * 87.17350 * 140.02506 * 10 8 7 12 12 H 1.08998 * 113.61196 * 219.97759 * 11 10 8 13 13 N 1.46505 * 113.61334 * 89.07333 * 11 10 8 14 14 C 1.34776 * 119.99597 * 154.99978 * 13 11 10 15 15 O 1.21275 * 120.00338 * 0.02562 * 14 13 11 16 16 C 1.50705 * 119.99715 * 180.02562 * 14 13 11 17 17 S 1.81000 * 109.46853 * 180.02562 * 16 14 13 18 18 C 1.76206 * 99.99702 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00018 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99963 * 179.97438 * 18 17 16 21 21 N 1.31623 * 120.00065 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00002 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47153 * 89.99704 * 22 20 18 24 24 H 1.48495 * 109.47014 * 209.99487 * 22 20 18 25 25 H 1.48504 * 109.46961 * 329.99808 * 22 20 18 26 26 C 1.53781 * 87.08070 * 334.52830 * 11 10 8 27 27 S 1.70974 * 110.16963 * 0.22528 * 5 4 3 28 28 H 1.08995 * 109.46907 * 90.00274 * 1 2 3 29 29 H 1.09008 * 109.46655 * 209.99854 * 1 2 3 30 30 H 1.08995 * 109.47006 * 329.99545 * 1 2 3 31 31 H 1.08002 * 122.74950 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.46920 * 330.01947 * 6 5 4 33 33 H 1.08994 * 109.46921 * 210.02111 * 6 5 4 34 34 H 1.00902 * 111.00345 * 303.94908 * 7 6 5 35 35 H 1.09002 * 113.61357 * 25.43422 * 10 8 7 36 36 H 1.09002 * 113.61608 * 254.61584 * 10 8 7 37 37 H 0.96995 * 120.00170 * 335.00476 * 13 11 10 38 38 H 1.09000 * 109.46532 * 299.99611 * 16 14 13 39 39 H 1.08993 * 109.47264 * 60.00029 * 16 14 13 40 40 H 0.97004 * 120.00058 * 180.02562 * 21 20 18 41 41 H 1.09005 * 113.61471 * 139.98321 * 26 11 10 42 42 H 1.08996 * 113.61178 * 270.79663 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8172 0.0005 5 6 3.9312 -0.4256 0.0005 6 6 5.3533 -0.9243 0.0005 7 7 5.8151 -1.0869 1.3854 8 6 7.2006 -1.5735 1.4246 9 1 7.7580 -1.3403 0.5174 10 6 7.9467 -1.2047 2.7178 11 6 8.5650 -2.6120 2.6723 12 1 8.6377 -3.0888 3.6497 13 7 9.8146 -2.6796 1.9104 14 6 10.7145 -3.6469 2.1765 15 8 10.4897 -4.4617 3.0463 16 6 12.0002 -3.7161 1.3933 17 16 12.9897 -5.1133 1.9803 18 6 14.3914 -4.9609 0.9234 19 1 14.4330 -4.1665 0.1929 20 6 15.4424 -5.8611 1.0305 21 7 16.4897 -5.7469 0.2414 22 14 15.3707 -7.2346 2.2945 23 1 14.7339 -8.4317 1.6891 24 1 16.7477 -7.5753 2.7339 25 1 14.5736 -6.7886 3.4654 26 6 7.3283 -3.0437 1.8666 27 16 2.5437 -1.4247 -0.0066 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.9024 2.0875 -0.0004 32 1 5.9907 -0.2045 -0.5130 33 1 5.4017 -1.8842 -0.5137 34 1 5.7193 -0.2255 1.9021 35 1 7.2880 -1.0446 3.5714 36 1 8.6745 -0.4036 2.5888 37 1 9.9942 -2.0281 1.2146 38 1 11.7742 -3.8504 0.3354 39 1 12.5596 -2.7909 1.5308 40 1 17.2241 -6.3763 0.3160 41 1 7.5567 -3.7273 1.0489 42 1 6.5011 -3.3878 2.4874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731439669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:54 Heat of formation + Delta-G solvation = 26.719419 kcal Electronic energy + Delta-G solvation = -23072.432060 eV Core-core repulsion = 19499.042084 eV Total energy + Delta-G solvation = -3573.389976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.34200 -40.02036 -38.33963 -35.46355 -33.28203 -32.45609 -32.38744 -29.43860 -28.44811 -26.04617 -25.70119 -25.58756 -23.92956 -23.07879 -20.97253 -19.82918 -19.39560 -18.50962 -17.88484 -16.80712 -16.21150 -16.13130 -15.77265 -15.41890 -15.06440 -14.97875 -14.86220 -14.77821 -14.06471 -13.85469 -13.60435 -13.38822 -13.30254 -13.05397 -12.82931 -12.77339 -12.68483 -12.52363 -12.03717 -11.79590 -11.59405 -11.26895 -11.01198 -10.82570 -10.73574 -10.57925 -10.03725 -9.86203 -9.62492 -9.54475 -9.25631 -9.05005 -8.99774 -8.84757 -8.50839 -6.92432 -6.29391 -4.01271 0.24397 0.91340 1.36089 2.37044 2.74209 2.93138 3.28396 3.33643 3.50467 3.54949 3.63829 3.94494 4.20902 4.32450 4.33024 4.43747 4.53686 4.64876 4.70022 4.73518 4.76049 4.94346 4.95826 5.07346 5.09819 5.23543 5.23877 5.32295 5.38201 5.48894 5.60627 5.73577 5.74800 5.79270 5.87374 5.93706 6.00391 6.45793 6.67407 6.83893 7.31016 7.58821 7.93568 8.40984 8.47534 9.16832 10.79816 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.001558 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.274178 B =17967.455088 C =18028.669020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.230 4.230 3 C 0.030 3.970 4 N -0.471 5.471 5 C 0.044 3.956 6 C 0.134 3.866 7 N -0.670 5.670 8 C 0.058 3.942 9 H 0.078 0.922 10 C -0.148 4.148 11 C 0.124 3.876 12 H 0.106 0.894 13 N -0.720 5.720 14 C 0.533 3.467 15 O -0.517 6.517 16 C -0.125 4.125 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.137 4.137 27 S 0.151 5.849 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.173 0.827 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.348 0.652 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.399 0.601 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.071 0.929 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.906 14.379 -0.849 35.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.352 4.352 3 C -0.121 4.121 4 N -0.186 5.186 5 C -0.233 4.233 6 C 0.002 3.998 7 N -0.303 5.303 8 C -0.052 4.052 9 H 0.095 0.905 10 C -0.187 4.187 11 C 0.018 3.982 12 H 0.124 0.876 13 N -0.374 5.374 14 C 0.320 3.680 15 O -0.391 6.391 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.176 4.176 27 S 0.406 5.594 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.190 0.810 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.167 0.833 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.233 0.767 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -32.073 11.641 0.603 34.125 hybrid contribution 0.691 2.445 -1.353 2.879 sum -31.382 14.086 -0.751 34.406 Atomic orbital electron populations 1.20239 0.86750 1.03525 1.02992 1.26107 1.01859 0.95581 1.11625 1.21662 0.86885 1.00083 1.03444 1.66267 1.17953 1.18806 1.15528 1.26821 1.00932 0.91361 1.04215 1.20504 0.86836 1.00794 0.91689 1.60653 1.21574 1.36448 1.11601 1.23222 0.87094 0.97302 0.97555 0.90463 1.23601 0.99423 0.97402 0.98228 1.21607 0.83371 0.96429 0.96825 0.87566 1.45685 1.18823 1.32928 1.39943 1.20292 0.84297 0.80168 0.83281 1.90699 1.77434 1.39075 1.31858 1.23285 0.96072 1.05306 1.02862 1.84799 1.19218 1.36094 1.51348 1.22320 1.02995 1.19342 1.22328 0.89404 1.24707 0.94014 0.97072 0.95462 1.69936 1.07265 1.37006 1.37476 0.86736 0.78749 0.82897 0.83479 1.19198 1.19930 1.15911 1.23602 0.97954 0.95474 1.00614 1.84094 0.97937 1.10519 1.66892 0.90498 0.90985 0.90202 0.80988 0.91861 0.88682 0.83256 0.88127 0.90699 0.76739 0.88493 0.88439 0.91938 0.91069 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.42 36.01 0.38 0.09 16 2 C -0.23 -1.54 6.60 -35.91 -0.24 -1.77 16 3 C 0.03 0.24 11.25 -19.18 -0.22 0.02 16 4 N -0.47 -4.47 10.54 -11.86 -0.13 -4.59 16 5 C 0.04 0.37 6.90 -13.45 -0.09 0.28 16 6 C 0.13 0.98 6.11 -4.98 -0.03 0.95 16 7 N -0.67 -4.93 6.55 -106.98 -0.70 -5.63 16 8 C 0.06 0.43 4.03 -66.76 -0.27 0.16 16 9 H 0.08 0.54 7.87 -51.93 -0.41 0.14 16 10 C -0.15 -1.11 7.39 -25.92 -0.19 -1.30 16 11 C 0.12 1.32 4.32 -67.11 -0.29 1.03 16 12 H 0.11 1.34 7.47 -51.93 -0.39 0.95 16 13 N -0.72 -8.68 5.26 -53.01 -0.28 -8.96 16 14 C 0.53 9.21 7.85 -10.98 -0.09 9.12 16 15 O -0.52 -10.95 15.46 5.56 0.09 -10.87 16 16 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 17 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 18 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 19 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.50 13.97 55.49 0.78 -25.72 16 22 Si 0.86 21.73 27.74 -169.99 -4.72 17.02 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 26 C -0.14 -1.28 7.69 -25.78 -0.20 -1.47 16 27 S 0.15 1.09 23.18 -107.50 -2.49 -1.40 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.35 2.54 8.54 -39.29 -0.34 2.20 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.40 3.70 8.70 -40.82 -0.36 3.34 16 38 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 39 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -34.49 382.98 -10.61 -45.10 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.14 Total: 1.84 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -0.80 Total: -7.02 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.33 Total: -44.91 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.72 Total: 17.02 kcal Atomic # 16 Polarization: -2.46 SS G_CDS: -4.49 Total: -6.94 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.49 -10.61 -45.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731439669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.823 kcal (2) G-P(sol) polarization free energy of solvation -34.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds