Wall clock time and date at job start Sat Apr 11 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33642 * 126.03395 * 2 1 4 4 N 1.31780 * 114.50011 * 179.97438 * 3 2 1 5 5 C 1.29029 * 117.12162 * 0.02562 * 4 3 2 6 6 C 1.50707 * 124.91300 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.46819 * 90.02190 * 6 5 4 8 8 C 1.46899 * 110.99736 * 179.97438 * 7 6 5 9 9 H 1.09000 * 112.90940 * 23.75151 * 8 7 6 10 10 C 1.53786 * 113.61541 * 154.99883 * 8 7 6 11 11 C 1.53781 * 87.17350 * 140.02506 * 10 8 7 12 12 H 1.08998 * 113.61196 * 219.97759 * 11 10 8 13 13 N 1.46505 * 113.61334 * 89.07333 * 11 10 8 14 14 C 1.34776 * 119.99597 * 154.99978 * 13 11 10 15 15 O 1.21275 * 120.00338 * 0.02562 * 14 13 11 16 16 C 1.50705 * 119.99715 * 180.02562 * 14 13 11 17 17 S 1.81000 * 109.46853 * 180.02562 * 16 14 13 18 18 C 1.76206 * 99.99702 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00018 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99963 * 179.97438 * 18 17 16 21 21 N 1.31623 * 120.00065 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00002 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47153 * 89.99704 * 22 20 18 24 24 H 1.48495 * 109.47014 * 209.99487 * 22 20 18 25 25 H 1.48504 * 109.46961 * 329.99808 * 22 20 18 26 26 C 1.53781 * 87.08070 * 334.52830 * 11 10 8 27 27 S 1.70974 * 110.16963 * 0.22528 * 5 4 3 28 28 H 1.08995 * 109.46907 * 90.00274 * 1 2 3 29 29 H 1.09008 * 109.46655 * 209.99854 * 1 2 3 30 30 H 1.08995 * 109.47006 * 329.99545 * 1 2 3 31 31 H 1.08002 * 122.74950 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.46920 * 330.01947 * 6 5 4 33 33 H 1.08994 * 109.46921 * 210.02111 * 6 5 4 34 34 H 1.00902 * 111.00345 * 303.94908 * 7 6 5 35 35 H 1.09002 * 113.61357 * 25.43422 * 10 8 7 36 36 H 1.09002 * 113.61608 * 254.61584 * 10 8 7 37 37 H 0.96995 * 120.00170 * 335.00476 * 13 11 10 38 38 H 1.09000 * 109.46532 * 299.99611 * 16 14 13 39 39 H 1.08993 * 109.47264 * 60.00029 * 16 14 13 40 40 H 0.97004 * 120.00058 * 180.02562 * 21 20 18 41 41 H 1.09005 * 113.61471 * 139.98321 * 26 11 10 42 42 H 1.08996 * 113.61178 * 270.79663 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8172 0.0005 5 6 3.9312 -0.4256 0.0005 6 6 5.3533 -0.9243 0.0005 7 7 5.8151 -1.0869 1.3854 8 6 7.2006 -1.5735 1.4246 9 1 7.7580 -1.3403 0.5174 10 6 7.9467 -1.2047 2.7178 11 6 8.5650 -2.6120 2.6723 12 1 8.6377 -3.0888 3.6497 13 7 9.8146 -2.6796 1.9104 14 6 10.7145 -3.6469 2.1765 15 8 10.4897 -4.4617 3.0463 16 6 12.0002 -3.7161 1.3933 17 16 12.9897 -5.1133 1.9803 18 6 14.3914 -4.9609 0.9234 19 1 14.4330 -4.1665 0.1929 20 6 15.4424 -5.8611 1.0305 21 7 16.4897 -5.7469 0.2414 22 14 15.3707 -7.2346 2.2945 23 1 14.7339 -8.4317 1.6891 24 1 16.7477 -7.5753 2.7339 25 1 14.5736 -6.7886 3.4654 26 6 7.3283 -3.0437 1.8666 27 16 2.5437 -1.4247 -0.0066 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.9024 2.0875 -0.0004 32 1 5.9907 -0.2045 -0.5130 33 1 5.4017 -1.8842 -0.5137 34 1 5.7193 -0.2255 1.9021 35 1 7.2880 -1.0446 3.5714 36 1 8.6745 -0.4036 2.5888 37 1 9.9942 -2.0281 1.2146 38 1 11.7742 -3.8504 0.3354 39 1 12.5596 -2.7909 1.5308 40 1 17.2241 -6.3763 0.3160 41 1 7.5567 -3.7273 1.0489 42 1 6.5011 -3.3878 2.4874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731439669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:54 Heat of formation + Delta-G solvation = 1.437832 kcal Electronic energy + Delta-G solvation = -23073.528351 eV Core-core repulsion = 19499.042084 eV Total energy + Delta-G solvation = -3574.486268 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.26141 -40.67176 -39.44695 -36.18667 -34.67289 -34.18059 -33.09673 -30.74077 -29.13211 -27.85211 -26.71618 -26.21531 -24.59209 -23.73437 -22.19470 -20.51698 -20.13802 -19.85400 -19.06578 -18.05657 -17.24826 -17.04262 -16.89308 -16.56503 -16.39456 -16.00191 -15.76579 -15.54904 -15.25228 -14.96018 -14.77931 -14.48551 -14.11833 -13.89325 -13.75986 -13.43753 -13.36441 -13.31928 -13.26053 -13.08772 -12.98245 -12.75966 -12.45974 -12.06012 -11.86164 -11.54842 -11.46714 -11.16743 -11.00218 -10.62910 -10.53017 -10.17357 -10.08015 -9.78681 -9.46923 -8.99061 -8.51244 -6.21998 -0.29749 0.39177 0.81588 0.99412 1.31910 1.47322 1.55706 1.56274 1.80600 2.20942 2.26402 2.72145 2.87221 2.99916 3.35908 3.52949 3.61011 3.84802 3.94256 4.01802 4.05607 4.11945 4.25036 4.27931 4.40416 4.47446 4.52124 4.62504 4.71682 4.86239 4.87241 4.89760 4.98202 5.05414 5.08998 5.14373 5.28297 5.55048 5.70941 5.97189 6.11663 6.27322 6.47791 6.75229 6.94131 7.21084 8.61097 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.001558 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.274178 B =17967.455088 C =18028.669020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.224 4.224 3 C 0.010 3.990 4 N -0.494 5.494 5 C 0.030 3.970 6 C 0.136 3.864 7 N -0.671 5.671 8 C 0.070 3.930 9 H 0.088 0.912 10 C -0.130 4.130 11 C 0.111 3.889 12 H 0.085 0.915 13 N -0.695 5.695 14 C 0.538 3.462 15 O -0.561 6.561 16 C -0.112 4.112 17 S -0.176 6.176 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.047 3.953 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 C -0.134 4.134 27 S 0.151 5.849 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.189 0.811 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.351 0.649 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.416 0.584 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.277 0.723 41 H 0.060 0.940 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.957 15.377 -0.629 37.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.346 4.346 3 C -0.141 4.141 4 N -0.209 5.209 5 C -0.247 4.247 6 C 0.004 3.996 7 N -0.304 5.304 8 C -0.040 4.040 9 H 0.105 0.895 10 C -0.169 4.169 11 C 0.005 3.995 12 H 0.103 0.897 13 N -0.348 5.348 14 C 0.324 3.676 15 O -0.439 6.439 16 C -0.263 4.263 17 S 0.051 5.949 18 C -0.677 4.677 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.161 1.161 26 C -0.174 4.174 27 S 0.405 5.595 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.206 0.794 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.170 0.830 35 H 0.129 0.871 36 H 0.106 0.894 37 H 0.253 0.747 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -34.149 12.694 0.795 36.441 hybrid contribution 1.164 2.261 -1.486 2.946 sum -32.986 14.955 -0.692 36.224 Atomic orbital electron populations 1.20376 0.84727 1.04527 1.03975 1.26484 1.03162 0.94856 1.10074 1.21990 0.86623 1.01232 1.04220 1.66269 1.19030 1.19466 1.16170 1.26968 1.01603 0.91417 1.04753 1.20509 0.86493 1.01005 0.91554 1.60579 1.21355 1.36646 1.11808 1.23105 0.87364 0.95609 0.97915 0.89453 1.23516 0.99223 0.95466 0.98649 1.21770 0.82849 0.99006 0.95866 0.89729 1.45420 1.18203 1.31428 1.39723 1.19949 0.84347 0.80745 0.82568 1.90690 1.78282 1.41152 1.33823 1.23276 0.96220 1.02930 1.03834 1.84729 1.18967 1.40007 1.51240 1.22470 1.04516 1.18511 1.22235 0.91941 1.25548 0.93757 0.99321 0.97247 1.70014 1.08112 1.38285 1.39072 0.85874 0.79367 0.80069 0.81106 1.18711 1.18341 1.16082 1.23560 0.97095 0.96696 1.00024 1.84054 0.97842 1.10830 1.66748 0.89410 0.90394 0.88759 0.79405 0.91733 0.88230 0.82986 0.87127 0.89446 0.74688 0.86802 0.86734 0.91381 0.92137 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.42 71.24 0.74 0.32 16 2 C -0.22 -2.66 6.60 24.64 0.16 -2.50 16 3 C 0.01 0.14 11.25 83.66 0.94 1.08 16 4 N -0.49 -8.90 10.54 -191.44 -2.02 -10.92 16 5 C 0.03 0.47 6.90 88.52 0.61 1.08 16 6 C 0.14 1.79 6.11 85.56 0.52 2.31 16 7 N -0.67 -8.57 6.55 -492.38 -3.23 -11.80 16 8 C 0.07 0.87 4.03 45.53 0.18 1.05 16 9 H 0.09 0.96 7.87 -2.39 -0.02 0.94 16 10 C -0.13 -1.62 7.39 31.12 0.23 -1.39 16 11 C 0.11 2.18 4.32 45.52 0.20 2.37 16 12 H 0.08 2.09 7.47 -2.39 -0.02 2.08 16 13 N -0.69 -15.39 5.26 -440.03 -2.32 -17.70 16 14 C 0.54 17.96 7.85 87.66 0.69 18.65 16 15 O -0.56 -23.70 15.46 -3.01 -0.05 -23.74 16 16 C -0.11 -4.10 6.16 71.24 0.44 -3.66 16 17 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 18 C -0.53 -30.73 10.04 67.95 0.68 -30.05 16 19 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 20 C 0.05 2.74 5.50 84.86 0.47 3.20 16 21 N -0.92 -55.73 13.97 21.65 0.30 -55.43 16 22 Si 0.91 44.95 27.74 68.60 1.90 46.86 16 23 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.24 -11.64 6.74 99.48 0.67 -10.97 16 26 C -0.13 -2.30 7.69 31.21 0.24 -2.06 16 27 S 0.15 2.02 23.18 -56.49 -1.31 0.71 16 28 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.19 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.35 4.39 8.54 -89.69 -0.77 3.63 16 35 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.42 6.49 8.70 -92.71 -0.81 5.68 16 38 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 39 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 40 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -75.25 382.98 -2.21 -77.46 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -0.56 Total: 14.04 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 6.10 Total: -9.59 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -7.26 Total: -95.85 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.05 Total: -23.74 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.90 Total: 46.86 kcal Atomic # 16 Polarization: -6.82 SS G_CDS: -2.36 Total: -9.18 kcal Total: -75.25 -2.21 -77.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731439669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.900 kcal (2) G-P(sol) polarization free energy of solvation -75.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds