Wall clock time and date at job start Sat Apr 11 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33635 * 126.03805 * 2 1 4 4 N 1.31776 * 114.50289 * 179.97438 * 3 2 1 5 5 C 1.29027 * 117.12568 * 0.02562 * 4 3 2 6 6 C 1.50699 * 124.91918 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47211 * 89.95225 * 6 5 4 8 8 C 1.46901 * 110.99947 * 180.02562 * 7 6 5 9 9 H 1.09002 * 112.85172 * 25.32859 * 8 7 6 10 10 C 1.53784 * 113.61620 * 156.53122 * 8 7 6 11 11 C 1.53777 * 87.08164 * 139.97826 * 10 8 7 12 12 H 1.09009 * 113.61186 * 89.11684 * 11 10 8 13 13 N 1.46499 * 113.61588 * 219.93363 * 11 10 8 14 14 C 1.34780 * 120.00044 * 205.00213 * 13 11 10 15 15 O 1.21277 * 119.99885 * 0.02562 * 14 13 11 16 16 C 1.50702 * 119.99805 * 179.97438 * 14 13 11 17 17 S 1.81000 * 109.47035 * 179.97438 * 16 14 13 18 18 C 1.76202 * 100.00153 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99540 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00063 * 180.02562 * 18 17 16 21 21 N 1.31635 * 119.99953 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00021 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46835 * 90.00034 * 22 20 18 24 24 H 1.48493 * 109.47494 * 210.00280 * 22 20 18 25 25 H 1.48497 * 109.47106 * 330.00545 * 22 20 18 26 26 C 1.53780 * 113.61478 * 254.13932 * 8 7 6 27 27 S 1.70977 * 110.16578 * 359.97438 * 5 4 3 28 28 H 1.09008 * 109.46965 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47237 * 300.01211 * 1 2 3 30 30 H 1.08998 * 109.46936 * 60.02070 * 1 2 3 31 31 H 1.08004 * 122.75010 * 359.96681 * 3 2 1 32 32 H 1.09000 * 109.47371 * 209.95446 * 6 5 4 33 33 H 1.09005 * 109.46982 * 329.95505 * 6 5 4 34 34 H 1.00905 * 110.99865 * 56.04865 * 7 6 5 35 35 H 1.09001 * 113.61435 * 254.53341 * 10 8 7 36 36 H 1.09007 * 113.61008 * 25.43071 * 10 8 7 37 37 H 0.97001 * 119.99788 * 25.00376 * 13 11 10 38 38 H 1.08996 * 109.47348 * 299.99975 * 16 14 13 39 39 H 1.09004 * 109.46837 * 60.00710 * 16 14 13 40 40 H 0.96998 * 119.99981 * 180.02562 * 21 20 18 41 41 H 1.09002 * 113.61737 * 334.56286 * 26 8 7 42 42 H 1.09001 * 113.61883 * 105.46831 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0806 0.0000 4 7 3.5843 0.8171 0.0005 5 6 3.9311 -0.4257 0.0005 6 6 5.3532 -0.9245 0.0016 7 7 5.8144 -1.0859 1.3869 8 6 7.2003 -1.5713 1.4272 9 1 7.7652 -1.3140 0.5311 10 6 7.9337 -1.2335 2.7360 11 6 8.5525 -2.6392 2.6601 12 1 9.4877 -2.6751 2.1012 13 7 8.6393 -3.3130 3.9581 14 6 9.5647 -4.2721 4.1589 15 8 10.3258 -4.5770 3.2652 16 6 9.6544 -4.9648 5.4943 17 16 10.9841 -6.1920 5.4493 18 6 10.8673 -6.8300 7.0875 19 1 10.1226 -6.4416 7.7664 20 6 11.7323 -7.8318 7.5055 21 7 12.6403 -8.3048 6.6782 22 14 11.6089 -8.5076 9.2425 23 1 10.6674 -9.6558 9.2611 24 1 12.9494 -8.9593 9.6944 25 1 11.1117 -7.4451 10.1530 26 6 7.3235 -3.0506 1.8291 27 16 2.5436 -1.4248 0.0004 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8898 30 1 -0.3633 0.5135 -0.8902 31 1 1.9024 2.0875 -0.0005 32 1 5.4018 -1.8848 -0.5118 33 1 5.9909 -0.2051 -0.5122 34 1 5.2011 -1.6987 1.9032 35 1 8.6624 -0.4294 2.6331 36 1 7.2667 -1.0953 3.5870 37 1 8.0308 -3.0689 4.6729 38 1 9.8640 -4.2299 6.2715 39 1 8.7087 -5.4621 5.7098 40 1 13.2446 -9.0051 6.9702 41 1 6.4895 -3.4102 2.4319 42 1 7.5603 -3.7114 0.9953 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731471402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:56 Heat of formation + Delta-G solvation = 25.624778 kcal Electronic energy + Delta-G solvation = -22952.274272 eV Core-core repulsion = 19378.836829 eV Total energy + Delta-G solvation = -3573.437443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.26416 -39.94120 -38.33410 -35.40197 -33.32223 -32.44138 -32.39991 -29.35306 -28.39117 -25.91026 -25.71274 -25.47362 -23.84383 -22.98375 -20.49188 -20.32387 -19.56509 -18.43893 -17.79352 -16.75371 -16.32839 -16.17012 -15.58682 -15.20842 -15.11644 -14.80980 -14.76728 -14.41711 -14.07920 -13.93110 -13.68201 -13.37712 -13.25066 -13.05614 -12.85394 -12.70977 -12.59925 -12.42041 -11.91227 -11.65638 -11.43544 -11.13978 -11.06749 -11.02059 -10.97954 -10.74510 -9.98798 -9.81209 -9.66745 -9.38615 -9.26067 -9.07082 -8.94295 -8.71240 -8.23715 -6.50025 -6.21777 -3.92315 0.23056 0.86916 1.28128 2.39144 3.03736 3.06752 3.22256 3.27901 3.32012 3.55674 3.74479 3.93057 4.20440 4.31922 4.37429 4.42079 4.60246 4.63200 4.66432 4.71860 4.91356 4.95446 5.12145 5.13442 5.15310 5.23985 5.32814 5.36986 5.48342 5.55598 5.62977 5.73575 5.76391 5.79315 5.89228 6.01629 6.14276 6.55248 6.68074 6.85009 7.35135 7.59521 7.72686 8.35155 8.61716 9.23589 10.85657 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.024895 B = 0.001550 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.448058 B =18064.924942 C =18693.684954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.221 4.221 3 C 0.031 3.969 4 N -0.454 5.454 5 C 0.048 3.952 6 C 0.135 3.865 7 N -0.668 5.668 8 C 0.070 3.930 9 H 0.105 0.895 10 C -0.132 4.132 11 C 0.128 3.872 12 H 0.116 0.884 13 N -0.727 5.727 14 C 0.533 3.467 15 O -0.518 6.518 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.182 4.182 27 S 0.118 5.882 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.175 0.825 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.344 0.656 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.086 0.914 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.184 18.108 -14.326 33.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.343 4.343 3 C -0.121 4.121 4 N -0.167 5.167 5 C -0.231 4.231 6 C 0.003 3.997 7 N -0.299 5.299 8 C -0.041 4.041 9 H 0.123 0.877 10 C -0.171 4.171 11 C 0.021 3.979 12 H 0.133 0.867 13 N -0.380 5.380 14 C 0.319 3.681 15 O -0.392 6.392 16 C -0.305 4.305 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.223 4.223 27 S 0.372 5.628 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.192 0.808 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.164 0.836 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.294 17.460 -15.788 32.422 hybrid contribution -1.795 -0.008 2.280 2.902 sum -24.089 17.453 -13.508 32.670 Atomic orbital electron populations 1.20246 0.86694 1.03286 1.03304 1.26045 1.01720 0.94977 1.11531 1.21719 0.86931 1.00173 1.03230 1.66220 1.17520 1.18707 1.14276 1.26871 1.00322 0.91391 1.04469 1.20505 0.87707 1.00075 0.91455 1.60389 1.03092 1.54805 1.11608 1.22873 0.88824 0.93404 0.98966 0.87716 1.23448 0.99072 0.96639 0.97939 1.22240 0.98462 0.91834 0.85317 0.86655 1.45953 1.37405 1.39948 1.14674 1.20353 0.79346 0.78766 0.89634 1.90691 1.41034 1.62937 1.44573 1.23542 1.06896 1.03682 0.96378 1.85389 1.38338 1.40948 1.18725 1.22873 1.22210 1.24996 0.98343 0.90930 1.24990 0.94469 0.95622 0.98479 1.70020 1.18287 1.26698 1.35286 0.86166 0.77666 0.79109 0.82557 1.20285 1.20737 1.19699 1.24267 0.99841 0.97293 1.00913 1.84093 0.99045 1.11470 1.68191 0.91150 0.90151 0.90207 0.80823 0.92597 0.87771 0.83638 0.90399 0.89170 0.76727 0.89195 0.89275 0.92186 0.89532 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.42 36.01 0.38 0.09 16 2 C -0.22 -1.48 6.60 -35.92 -0.24 -1.72 16 3 C 0.03 0.24 11.25 -19.19 -0.22 0.03 16 4 N -0.45 -4.53 10.54 -11.86 -0.13 -4.65 16 5 C 0.05 0.40 6.90 -13.46 -0.09 0.31 16 6 C 0.13 0.97 6.12 -4.98 -0.03 0.94 16 7 N -0.67 -5.08 6.60 -107.13 -0.71 -5.79 16 8 C 0.07 0.53 4.16 -66.90 -0.28 0.25 16 9 H 0.10 0.73 7.88 -51.93 -0.41 0.32 16 10 C -0.13 -1.11 7.63 -25.92 -0.20 -1.31 16 11 C 0.13 1.41 4.24 -67.03 -0.28 1.12 16 12 H 0.12 1.49 7.46 -51.92 -0.39 1.10 16 13 N -0.73 -9.38 5.36 -52.93 -0.28 -9.67 16 14 C 0.53 9.79 7.85 -10.98 -0.09 9.71 16 15 O -0.52 -11.63 15.46 5.56 0.09 -11.54 16 16 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 22 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C -0.18 -1.63 7.52 -25.83 -0.19 -1.83 16 27 S 0.12 0.81 23.18 -107.50 -2.49 -1.68 16 28 H 0.07 0.23 8.14 -51.92 -0.42 -0.19 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.76 8.13 -51.93 -0.42 0.34 16 34 H 0.34 2.47 8.20 -39.29 -0.32 2.15 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.40 4.04 8.73 -40.82 -0.36 3.68 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 39 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.09 0.74 7.83 -51.93 -0.41 0.34 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 385.30 15.07 5.81 5.81 Total: -1.00 -35.49 385.30 -11.11 -46.60 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.07 Total: 2.10 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -0.82 Total: -8.26 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.38 Total: -45.54 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -4.70 Total: -5.53 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.49 -11.11 -46.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731471402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.224 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds