Wall clock time and date at job start Sat Apr 11 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 2 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 2 8 8 S 1.81000 * 109.47389 * 180.02562 * 7 5 4 9 9 C 1.76198 * 99.99715 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00516 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99710 * 179.97438 * 9 8 7 12 12 N 1.31634 * 120.00163 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00011 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46850 * 90.00589 * 13 11 9 15 15 H 1.48498 * 109.47329 * 210.00016 * 13 11 9 16 16 H 1.48499 * 109.47220 * 330.01003 * 13 11 9 17 17 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 18 18 C 1.53937 * 113.73173 * 158.76410 * 17 2 1 19 19 N 1.48194 * 86.10244 * 221.95796 * 18 17 2 20 20 C 1.46894 * 111.07186 * 137.52019 * 19 18 17 21 21 C 1.50703 * 109.47170 * 90.56750 * 20 19 18 22 22 C 1.35143 * 127.24726 * 89.70880 * 21 20 19 23 23 C 1.37809 * 114.75897 * 179.87098 * 22 21 20 24 24 N 1.30084 * 116.87758 * 0.44043 * 23 22 21 25 25 S 1.69599 * 107.15618 * 359.76533 * 24 23 22 26 26 C 1.47964 * 90.79527 * 24.60190 * 19 18 17 27 27 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 29 29 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 30 30 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 31 31 H 1.08998 * 109.46954 * 300.00581 * 7 5 4 32 32 H 1.09002 * 109.46946 * 59.99717 * 7 5 4 33 33 H 0.96991 * 119.99795 * 179.97438 * 12 11 9 34 34 H 1.09000 * 112.94215 * 290.33673 * 17 2 1 35 35 H 1.08996 * 113.76167 * 336.23987 * 18 17 2 36 36 H 1.08997 * 113.76180 * 107.60803 * 18 17 2 37 37 H 1.08997 * 109.47443 * 210.57071 * 20 19 18 38 38 H 1.09004 * 109.47135 * 330.57091 * 20 19 18 39 39 H 1.07999 * 122.61591 * 0.03431 * 22 21 20 40 40 H 1.07997 * 121.55992 * 180.21164 * 23 22 21 41 41 H 1.09002 * 113.75724 * 221.08037 * 26 19 18 42 42 H 1.08995 * 113.86122 * 89.73629 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8638 1.1599 2.4102 7 6 2.6605 -0.7257 3.5847 8 16 2.7270 0.4388 4.9688 9 6 3.3357 -0.6251 6.2346 10 1 3.5447 -1.6616 6.0147 11 6 3.5475 -0.1307 7.5142 12 7 3.2932 1.1328 7.7821 13 14 4.1921 -1.2586 8.8564 14 1 5.6767 -1.2203 8.8645 15 1 3.6782 -0.8047 10.1736 16 1 3.7342 -2.6474 8.5982 17 6 2.0400 -0.7213 -1.2492 18 6 3.4849 -0.3524 -1.6311 19 7 2.9994 -0.3203 -3.0309 20 6 3.5498 0.8335 -3.7545 21 6 4.8445 0.4394 -4.4177 22 6 5.0054 -0.0742 -5.6573 23 6 6.3116 -0.3403 -6.0067 24 7 7.2233 -0.0798 -5.1162 25 16 6.4282 0.5418 -3.7532 26 6 1.6207 -0.0474 -2.5682 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 2.2491 -1.6318 1.1526 31 1 1.9894 -1.5476 3.8337 32 1 3.6590 -1.1179 3.3911 33 1 3.4409 1.4781 8.6764 34 1 1.8527 -1.7948 -1.2262 35 1 3.8041 0.6194 -1.2547 36 1 4.2072 -1.1444 -1.4337 37 1 2.8381 1.1603 -4.5125 38 1 3.7338 1.6478 -3.0537 39 1 4.1753 -0.2590 -6.3230 40 1 6.5660 -0.7495 -6.9732 41 1 0.8562 -0.5963 -3.1182 42 1 1.3917 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734108521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:59 Heat of formation + Delta-G solvation = 10.471977 kcal Electronic energy + Delta-G solvation = -23762.522653 eV Core-core repulsion = 20188.428136 eV Total energy + Delta-G solvation = -3574.094518 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.49167 -40.32212 -39.55121 -36.43023 -34.58363 -33.92661 -32.40197 -30.17773 -29.51075 -27.67110 -27.20865 -26.36256 -24.58475 -22.89487 -21.60385 -20.80625 -20.63939 -19.76035 -18.78147 -17.81431 -17.68410 -16.87971 -16.83206 -16.65411 -16.40175 -16.12336 -15.65971 -15.48691 -14.96818 -14.69641 -14.58733 -14.30327 -14.23748 -13.82642 -13.79425 -13.70619 -13.22322 -13.16168 -13.08495 -12.89142 -12.72545 -12.57793 -12.02963 -11.89713 -11.75760 -11.71074 -11.63477 -11.41206 -11.14302 -10.89733 -10.52917 -10.26983 -10.14641 -9.82111 -9.71192 -8.65910 -8.34710 -6.12286 -0.25358 0.53441 0.93525 1.27690 1.42147 1.47436 1.57622 1.58613 1.65318 2.25873 2.30977 2.87273 2.99362 3.30250 3.38710 3.58163 3.64293 3.97638 4.00873 4.18052 4.20595 4.27969 4.31170 4.34160 4.43311 4.44881 4.50235 4.52799 4.57292 4.75131 4.81044 4.84480 4.93533 4.99042 5.01958 5.22214 5.23443 5.36532 5.41979 5.58698 5.66832 5.91626 6.19880 6.55444 7.06738 7.29584 8.74404 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.002050 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.130809 B =13655.348021 C =14953.255811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.152 3.848 3 H 0.064 0.936 4 N -0.708 5.708 5 C 0.536 3.464 6 O -0.565 6.565 7 C -0.131 4.131 8 S -0.151 6.151 9 C -0.546 4.546 10 H 0.082 0.918 11 C 0.012 3.988 12 N -0.911 5.911 13 Si 0.998 3.002 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.258 1.258 17 C -0.108 4.108 18 C 0.000 4.000 19 N -0.478 5.478 20 C 0.091 3.909 21 C -0.150 4.150 22 C -0.192 4.192 23 C 0.093 3.907 24 N -0.498 5.498 25 S 0.207 5.793 26 C 0.023 3.977 27 H 0.073 0.927 28 H 0.030 0.970 29 H 0.087 0.913 30 H 0.415 0.585 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.271 0.729 34 H 0.122 0.878 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.061 0.939 39 H 0.184 0.816 40 H 0.214 0.786 41 H 0.115 0.885 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.416 -6.768 -30.772 31.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.082 0.918 4 N -0.362 5.362 5 C 0.322 3.678 6 O -0.443 6.443 7 C -0.282 4.282 8 S 0.076 5.924 9 C -0.694 4.694 10 H 0.100 0.900 11 C -0.192 4.192 12 N -0.547 5.547 13 Si 0.820 3.180 14 H -0.194 1.194 15 H -0.203 1.203 16 H -0.182 1.182 17 C -0.127 4.127 18 C -0.129 4.129 19 N -0.200 5.200 20 C -0.039 4.039 21 C -0.280 4.280 22 C -0.228 4.228 23 C -0.104 4.104 24 N -0.318 5.318 25 S 0.358 5.642 26 C -0.106 4.106 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.106 0.894 30 H 0.252 0.748 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.137 0.863 38 H 0.079 0.921 39 H 0.201 0.799 40 H 0.231 0.769 41 H 0.134 0.866 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.967 -4.899 -29.778 30.194 hybrid contribution -0.408 -1.460 0.364 1.558 sum -1.375 -6.359 -29.414 30.125 Atomic orbital electron populations 1.22115 0.94232 1.03082 1.02171 1.21046 0.94826 0.96224 0.83181 0.91785 1.45837 1.67396 1.14512 1.08417 1.19994 0.76676 0.86544 0.84617 1.90686 1.50837 1.17722 1.85095 1.23388 1.05396 1.03202 0.96222 1.85548 1.86483 1.17349 1.03028 1.23203 1.50687 0.98469 0.96998 0.89976 1.26129 0.95145 0.97207 1.00753 1.70181 1.46806 1.15424 1.22331 0.84962 0.78479 0.78237 0.76359 1.19371 1.20301 1.18179 1.23191 0.94924 1.02087 0.92495 1.24185 0.97860 1.01689 0.89182 1.68592 1.04376 1.35435 1.11608 1.21159 0.91005 0.92770 0.98974 1.25483 1.00663 1.03093 0.98800 1.21610 0.98932 1.04749 0.97459 1.23469 0.89289 0.96838 1.00843 1.76867 1.29142 1.22282 1.03546 1.84396 0.95813 1.60360 1.23584 1.24016 0.92111 1.01123 0.93347 0.90796 0.95084 0.89390 0.74819 0.87365 0.87429 0.92020 0.86032 0.91723 0.89520 0.86273 0.92052 0.79899 0.76933 0.86639 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.31 71.98 0.67 -2.08 16 2 C 0.15 2.86 2.38 44.99 0.11 2.97 16 3 H 0.06 1.55 7.41 -2.39 -0.02 1.54 16 4 N -0.71 -16.24 5.08 -442.53 -2.25 -18.49 16 5 C 0.54 18.96 7.82 87.66 0.69 19.65 16 6 O -0.57 -25.35 15.52 -3.04 -0.05 -25.40 16 7 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 8 S -0.15 -8.36 20.57 -56.49 -1.16 -9.53 16 9 C -0.55 -31.15 9.50 67.96 0.65 -30.50 16 10 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 11 C 0.01 0.71 5.49 84.86 0.47 1.17 16 12 N -0.91 -56.04 13.22 21.65 0.29 -55.75 16 13 Si 1.00 43.67 29.55 68.60 2.03 45.69 16 14 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 15 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 17 C -0.11 -1.29 3.46 -10.15 -0.04 -1.33 16 18 C 0.00 0.00 7.53 86.37 0.65 0.65 16 19 N -0.48 -5.85 6.14 -911.62 -5.60 -11.45 16 20 C 0.09 1.04 5.38 85.56 0.46 1.50 16 21 C -0.15 -2.17 6.16 24.97 0.15 -2.01 16 22 C -0.19 -2.23 10.17 21.45 0.22 -2.01 16 23 C 0.09 1.25 11.27 84.85 0.96 2.21 16 24 N -0.50 -10.23 12.09 -62.59 -0.76 -10.99 16 25 S 0.21 4.01 23.72 -56.49 -1.34 2.67 16 26 C 0.02 0.20 6.64 86.41 0.57 0.78 16 27 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 1.09 7.51 -2.39 -0.02 1.07 16 30 H 0.41 6.81 8.60 -92.71 -0.80 6.02 16 31 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 32 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 33 H 0.27 15.46 8.31 -92.72 -0.77 14.69 16 34 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.13 7.33 -2.39 -0.02 1.12 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.12 0.84 8.08 -2.39 -0.02 0.82 16 38 H 0.06 0.76 7.39 -2.38 -0.02 0.74 16 39 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 40 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.08 0.68 7.88 -2.39 -0.02 0.66 16 Total: -1.00 -80.14 381.92 -2.61 -82.75 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.24 Total: 14.15 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 5.99 Total: -13.68 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -8.32 Total: -96.67 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.40 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -4.35 SS G_CDS: -2.50 Total: -6.85 kcal Total: -80.14 -2.61 -82.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734108521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.225 kcal (2) G-P(sol) polarization free energy of solvation -80.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds