Wall clock time and date at job start Sat Apr 11 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47480 * 2 1 4 4 C 1.53008 * 109.46748 * 239.99766 * 2 1 3 5 5 N 1.46497 * 109.46771 * 185.00021 * 4 2 1 6 6 C 1.34777 * 119.99800 * 179.97438 * 5 4 2 7 7 O 1.21572 * 119.99920 * 0.02562 * 6 5 4 8 8 C 1.47728 * 120.00164 * 180.02562 * 6 5 4 9 9 C 1.40153 * 120.52843 * 180.02562 * 8 6 5 10 10 C 1.38165 * 118.31720 * 179.97438 * 9 8 6 11 11 C 1.38746 * 119.28586 * 359.97438 * 10 9 8 12 12 F 1.35102 * 119.49034 * 180.02562 * 11 10 9 13 13 N 1.32145 * 121.01564 * 359.97438 * 11 10 9 14 14 C 1.31689 * 121.84452 * 0.02562 * 13 11 10 15 15 N 1.46499 * 109.47001 * 120.00410 * 2 1 3 16 16 C 1.34774 * 120.00009 * 274.99810 * 15 2 1 17 17 O 1.21281 * 119.99804 * 359.97438 * 16 15 2 18 18 C 1.50700 * 120.00260 * 180.02562 * 16 15 2 19 19 S 1.81002 * 109.47389 * 179.97438 * 18 16 15 20 20 C 1.76194 * 99.99927 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00340 * 359.97438 * 20 19 18 22 22 C 1.38807 * 119.99741 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99837 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99848 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47337 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47280 * 119.99767 * 24 22 20 27 27 H 1.48504 * 109.47261 * 239.99427 * 24 22 20 28 28 H 1.08997 * 109.46789 * 59.99294 * 1 2 3 29 29 H 1.08995 * 109.47480 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46740 * 299.99953 * 1 2 3 31 31 H 1.08998 * 109.46921 * 65.00431 * 4 2 1 32 32 H 1.08996 * 109.47091 * 305.00758 * 4 2 1 33 33 H 0.96998 * 120.00526 * 0.02562 * 5 4 2 34 34 H 1.07995 * 120.84391 * 0.25059 * 9 8 6 35 35 H 1.07998 * 120.35200 * 179.97438 * 10 9 8 36 36 H 1.07993 * 119.70110 * 179.97438 * 14 13 11 37 37 H 0.97001 * 119.99969 * 94.99782 * 15 2 1 38 38 H 1.09003 * 109.47136 * 299.99502 * 18 16 15 39 39 H 1.08996 * 109.47280 * 59.99682 * 18 16 15 40 40 H 0.96997 * 119.99356 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 7 3.5000 -0.8265 -1.1906 6 6 4.1729 -1.4294 -2.1907 7 8 3.5683 -1.8855 -3.1417 8 6 5.6451 -1.5359 -2.1314 9 6 6.3560 -2.1601 -3.1655 10 6 7.7319 -2.2339 -3.0633 11 6 8.3599 -1.6923 -1.9510 12 9 9.7052 -1.7618 -1.8471 13 7 7.6626 -1.1088 -0.9921 14 6 6.3502 -1.0150 -1.0461 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0184 2.3571 17 8 1.8591 1.1584 2.4115 18 6 2.6499 -0.7287 3.5874 19 16 2.7114 0.4344 4.9729 20 6 3.3144 -0.6310 6.2402 21 1 3.5229 -1.6676 6.0204 22 6 3.5203 -0.1382 7.5214 23 7 3.2656 1.1252 7.7894 24 14 4.1602 -1.2674 8.8647 25 1 4.3662 -2.6294 8.3100 26 1 5.4500 -0.7421 9.3803 27 1 3.1726 -1.3286 9.9721 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -0.1584 -2.1370 32 1 1.6052 -1.7198 -1.2952 33 1 3.9824 -0.4629 -0.4317 34 1 5.8418 -2.5689 -4.0226 35 1 8.3122 -2.7080 -3.8410 36 1 5.8148 -0.5311 -0.2426 37 1 2.2490 -1.6319 1.1525 38 1 1.9777 -1.5510 3.8325 39 1 3.6492 -1.1206 3.3978 40 1 3.4099 1.4696 8.6846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738564918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:02 Heat of formation + Delta-G solvation = -79.765457 kcal Electronic energy + Delta-G solvation = -25845.919469 eV Core-core repulsion = 21701.698786 eV Total energy + Delta-G solvation = -4144.220682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.54047 -41.11062 -39.81261 -39.11320 -36.52160 -34.14905 -33.29484 -32.46460 -32.04475 -31.20657 -28.67563 -26.96277 -25.52368 -24.79320 -24.18964 -21.95202 -21.22261 -20.46607 -18.89729 -18.30823 -17.98422 -17.75056 -16.71984 -16.58798 -16.40545 -15.99948 -15.55566 -15.36026 -15.00790 -14.83571 -14.73884 -14.26487 -14.14156 -13.73927 -13.63965 -13.48716 -13.36491 -13.21222 -13.01154 -12.82975 -12.61341 -12.13867 -11.92961 -11.26434 -11.09491 -11.05881 -10.78658 -10.75182 -10.67565 -10.14477 -9.84809 -9.74925 -9.56270 -9.44515 -9.14455 -9.08354 -8.28946 -6.54882 -6.25645 -3.96534 -0.08597 0.48796 2.25964 2.56093 2.91673 2.93323 2.97119 3.15300 3.19513 3.25685 3.29858 3.61055 3.81936 4.07585 4.15664 4.16709 4.26238 4.34324 4.71365 4.80078 4.93814 5.01186 5.06524 5.10131 5.23189 5.25170 5.30762 5.40688 5.47893 5.58477 5.80087 5.83412 5.84370 5.90818 6.06530 6.09231 6.46952 6.93493 6.98046 7.53655 7.56833 7.65892 8.31684 8.47042 9.20272 10.81788 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.009100 B = 0.002713 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.064344 B =10317.337309 C =12895.113868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.097 0.903 4 C 0.113 3.887 5 N -0.722 5.722 6 C 0.569 3.431 7 O -0.533 6.533 8 C -0.203 4.203 9 C 0.013 3.987 10 C -0.201 4.201 11 C 0.333 3.667 12 F -0.105 7.105 13 N -0.512 5.512 14 C 0.179 3.821 15 N -0.739 5.739 16 C 0.533 3.467 17 O -0.512 6.512 18 C -0.155 4.155 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.280 1.280 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.405 0.595 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.172 0.828 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.292 -7.630 -24.060 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 H 0.115 0.885 4 C -0.011 4.011 5 N -0.374 5.374 6 C 0.355 3.645 7 O -0.410 6.410 8 C -0.208 4.208 9 C -0.013 4.013 10 C -0.222 4.222 11 C 0.180 3.820 12 F -0.084 7.084 13 N -0.225 5.225 14 C 0.020 3.980 15 N -0.395 5.395 16 C 0.319 3.681 17 O -0.386 6.386 18 C -0.306 4.306 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.241 0.759 34 H 0.178 0.822 35 H 0.175 0.825 36 H 0.189 0.811 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.862 -5.488 -23.803 24.594 hybrid contribution 0.985 -2.691 0.623 2.932 sum 3.847 -8.179 -23.180 24.880 Atomic orbital electron populations 1.22114 0.93969 1.02623 1.03316 1.21162 0.95215 0.97931 0.83166 0.88509 1.21791 0.79004 1.01975 0.98283 1.45912 1.08287 1.59570 1.23675 1.17822 0.86134 0.78053 0.82509 1.90809 1.69446 1.47776 1.32976 1.21019 0.94968 1.06278 0.98568 1.21631 0.92357 0.90418 0.96925 1.21871 0.95763 1.04992 0.99574 1.18466 0.78992 0.93575 0.90987 1.91673 1.27575 1.93322 1.95817 1.67063 1.09424 1.17766 1.28282 1.22818 0.87727 0.91987 0.95480 1.46184 1.69730 1.14065 1.09529 1.20357 0.76790 0.87238 0.83675 1.90718 1.47916 1.15703 1.84229 1.23549 1.03677 1.04975 0.98382 1.85401 1.86347 1.12690 0.98795 1.22896 1.50990 0.98156 0.96345 0.90877 1.24994 0.95050 0.95543 0.97980 1.70023 1.45522 1.13199 1.21488 0.86119 0.78555 0.80135 0.80706 1.19612 1.20524 1.20569 0.91452 0.92134 0.90942 0.89540 0.90338 0.75863 0.82236 0.82504 0.81112 0.76708 0.89184 0.89204 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 2 C 0.13 1.18 2.73 -67.92 -0.19 0.99 16 3 H 0.10 1.02 7.58 -51.93 -0.39 0.63 16 4 C 0.11 0.83 5.23 -4.04 -0.02 0.81 16 5 N -0.72 -5.44 5.34 -61.29 -0.33 -5.76 16 6 C 0.57 5.14 7.78 -12.38 -0.10 5.04 16 7 O -0.53 -6.32 16.42 5.30 0.09 -6.23 16 8 C -0.20 -1.62 5.89 -104.83 -0.62 -2.24 16 9 C 0.01 0.09 9.71 -38.89 -0.38 -0.29 16 10 C -0.20 -1.29 10.07 -39.42 -0.40 -1.68 16 11 C 0.33 3.04 8.41 -17.23 -0.14 2.90 16 12 F -0.11 -1.02 17.29 2.25 0.04 -0.98 16 13 N -0.51 -5.36 10.36 -13.22 -0.14 -5.50 16 14 C 0.18 1.49 10.71 -17.14 -0.18 1.31 16 15 N -0.74 -7.83 4.52 -53.80 -0.24 -8.07 16 16 C 0.53 8.61 7.81 -10.99 -0.09 8.53 16 17 O -0.51 -10.35 15.52 5.56 0.09 -10.26 16 18 C -0.16 -2.86 6.16 36.01 0.22 -2.64 16 19 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 20 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 24 Si 0.92 21.09 29.55 -169.99 -5.02 16.07 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.40 2.75 6.20 -40.82 -0.25 2.50 16 34 H 0.16 0.88 7.73 -52.49 -0.41 0.48 16 35 H 0.16 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.17 1.11 6.42 -52.49 -0.34 0.77 16 37 H 0.40 3.32 8.60 -40.82 -0.35 2.97 16 38 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 39 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -35.76 370.78 -7.41 -43.17 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.67 Total: 1.60 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.34 Total: -0.93 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.03 Total: -44.28 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.17 Total: -16.49 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.76 -7.41 -43.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738564918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.596 kcal (2) G-P(sol) polarization free energy of solvation -35.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds