Wall clock time and date at job start Sat Apr 11 2020 06:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47480 * 2 1 4 4 C 1.53008 * 109.46748 * 239.99766 * 2 1 3 5 5 N 1.46497 * 109.46771 * 185.00021 * 4 2 1 6 6 C 1.34777 * 119.99800 * 179.97438 * 5 4 2 7 7 O 1.21572 * 119.99920 * 0.02562 * 6 5 4 8 8 C 1.47728 * 120.00164 * 180.02562 * 6 5 4 9 9 C 1.40153 * 120.52843 * 180.02562 * 8 6 5 10 10 C 1.38165 * 118.31720 * 179.97438 * 9 8 6 11 11 C 1.38746 * 119.28586 * 359.97438 * 10 9 8 12 12 F 1.35102 * 119.49034 * 180.02562 * 11 10 9 13 13 N 1.32145 * 121.01564 * 359.97438 * 11 10 9 14 14 C 1.31689 * 121.84452 * 0.02562 * 13 11 10 15 15 N 1.46499 * 109.47001 * 120.00410 * 2 1 3 16 16 C 1.34774 * 120.00009 * 274.99810 * 15 2 1 17 17 O 1.21281 * 119.99804 * 359.97438 * 16 15 2 18 18 C 1.50700 * 120.00260 * 180.02562 * 16 15 2 19 19 S 1.81002 * 109.47389 * 179.97438 * 18 16 15 20 20 C 1.76194 * 99.99927 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00340 * 359.97438 * 20 19 18 22 22 C 1.38807 * 119.99741 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99837 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99848 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47337 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47280 * 119.99767 * 24 22 20 27 27 H 1.48504 * 109.47261 * 239.99427 * 24 22 20 28 28 H 1.08997 * 109.46789 * 59.99294 * 1 2 3 29 29 H 1.08995 * 109.47480 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46740 * 299.99953 * 1 2 3 31 31 H 1.08998 * 109.46921 * 65.00431 * 4 2 1 32 32 H 1.08996 * 109.47091 * 305.00758 * 4 2 1 33 33 H 0.96998 * 120.00526 * 0.02562 * 5 4 2 34 34 H 1.07995 * 120.84391 * 0.25059 * 9 8 6 35 35 H 1.07998 * 120.35200 * 179.97438 * 10 9 8 36 36 H 1.07993 * 119.70110 * 179.97438 * 14 13 11 37 37 H 0.97001 * 119.99969 * 94.99782 * 15 2 1 38 38 H 1.09003 * 109.47136 * 299.99502 * 18 16 15 39 39 H 1.08996 * 109.47280 * 59.99682 * 18 16 15 40 40 H 0.96997 * 119.99356 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 7 3.5000 -0.8265 -1.1906 6 6 4.1729 -1.4294 -2.1907 7 8 3.5683 -1.8855 -3.1417 8 6 5.6451 -1.5359 -2.1314 9 6 6.3560 -2.1601 -3.1655 10 6 7.7319 -2.2339 -3.0633 11 6 8.3599 -1.6923 -1.9510 12 9 9.7052 -1.7618 -1.8471 13 7 7.6626 -1.1088 -0.9921 14 6 6.3502 -1.0150 -1.0461 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0184 2.3571 17 8 1.8591 1.1584 2.4115 18 6 2.6499 -0.7287 3.5874 19 16 2.7114 0.4344 4.9729 20 6 3.3144 -0.6310 6.2402 21 1 3.5229 -1.6676 6.0204 22 6 3.5203 -0.1382 7.5214 23 7 3.2656 1.1252 7.7894 24 14 4.1602 -1.2674 8.8647 25 1 4.3662 -2.6294 8.3100 26 1 5.4500 -0.7421 9.3803 27 1 3.1726 -1.3286 9.9721 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -0.1584 -2.1370 32 1 1.6052 -1.7198 -1.2952 33 1 3.9824 -0.4629 -0.4317 34 1 5.8418 -2.5689 -4.0226 35 1 8.3122 -2.7080 -3.8410 36 1 5.8148 -0.5311 -0.2426 37 1 2.2490 -1.6319 1.1525 38 1 1.9777 -1.5510 3.8325 39 1 3.6492 -1.1206 3.3978 40 1 3.4099 1.4696 8.6846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738564918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:01 Heat of formation + Delta-G solvation = -106.543824 kcal Electronic energy + Delta-G solvation = -25847.080666 eV Core-core repulsion = 21701.698786 eV Total energy + Delta-G solvation = -4145.381880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.21907 -41.77463 -40.84095 -39.98558 -37.47390 -35.00568 -34.56968 -33.91146 -32.95040 -32.02250 -29.98999 -27.65740 -27.62317 -25.41671 -24.81916 -22.87485 -21.90085 -21.58991 -19.91403 -19.46790 -18.89226 -18.58319 -17.92114 -17.34164 -17.27553 -16.87278 -16.83691 -16.34695 -16.33645 -16.04540 -15.79467 -15.42953 -14.85796 -14.76647 -14.59310 -14.31640 -14.27589 -14.11840 -13.98367 -13.88004 -13.56983 -13.24623 -13.14030 -12.94686 -12.90992 -12.56767 -12.03978 -11.69131 -11.46604 -11.27032 -11.14927 -10.92137 -10.81840 -10.39921 -10.24260 -10.18393 -10.10474 -8.63488 -8.34095 -6.10539 -0.71386 -0.07000 1.28605 1.41299 1.48097 1.57834 1.59085 1.63794 1.92077 2.25811 2.30888 2.33522 2.52851 3.00523 3.24015 3.33657 3.48878 3.55894 3.61407 3.76151 4.00534 4.08256 4.13691 4.27013 4.36076 4.44324 4.55468 4.61026 4.68144 4.73597 4.77384 4.84325 5.03292 5.17613 5.32717 5.36168 5.43675 5.49501 6.21075 6.28151 6.35804 6.49918 6.97956 7.08247 7.26462 8.75071 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.009100 B = 0.002713 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.064344 B =10317.337309 C =12895.113868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.135 3.865 3 H 0.083 0.917 4 C 0.122 3.878 5 N -0.716 5.716 6 C 0.574 3.426 7 O -0.560 6.560 8 C -0.204 4.204 9 C 0.015 3.985 10 C -0.182 4.182 11 C 0.312 3.688 12 F -0.114 7.114 13 N -0.546 5.546 14 C 0.174 3.826 15 N -0.712 5.712 16 C 0.540 3.460 17 O -0.558 6.558 18 C -0.133 4.133 19 S -0.148 6.148 20 C -0.544 4.544 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.995 3.005 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.409 0.591 34 H 0.176 0.824 35 H 0.189 0.811 36 H 0.183 0.817 37 H 0.415 0.585 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.462 -10.041 -25.656 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 H 0.101 0.899 4 C -0.002 4.002 5 N -0.368 5.368 6 C 0.361 3.639 7 O -0.440 6.440 8 C -0.210 4.210 9 C -0.011 4.011 10 C -0.203 4.203 11 C 0.160 3.840 12 F -0.093 7.093 13 N -0.260 5.260 14 C 0.016 3.984 15 N -0.367 5.367 16 C 0.326 3.674 17 O -0.435 6.435 18 C -0.284 4.284 19 S 0.079 5.921 20 C -0.692 4.692 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.181 1.181 26 H -0.201 1.201 27 H -0.201 1.201 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.246 0.754 34 H 0.194 0.806 35 H 0.206 0.794 36 H 0.200 0.800 37 H 0.252 0.748 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.032 -7.937 -25.430 26.812 hybrid contribution 0.895 -1.962 0.968 2.364 sum 3.927 -9.899 -24.462 26.679 Atomic orbital electron populations 1.22080 0.93338 1.03447 1.02851 1.21234 0.95626 0.97313 0.82803 0.89932 1.21747 0.78756 1.02413 0.97246 1.45891 1.08452 1.58953 1.23497 1.17870 0.86352 0.77571 0.82152 1.90800 1.69977 1.49199 1.34032 1.21006 0.94469 1.06575 0.98924 1.21887 0.92494 0.89746 0.96960 1.22116 0.95685 1.03494 0.98997 1.18777 0.78787 0.94553 0.91880 1.91647 1.28223 1.93502 1.95944 1.66990 1.10417 1.19013 1.29623 1.22968 0.87219 0.92171 0.96065 1.45882 1.67877 1.14586 1.08328 1.19948 0.76596 0.86509 0.84395 1.90715 1.50234 1.17607 1.84960 1.23402 1.05628 1.03203 0.96183 1.85550 1.86669 1.17085 1.02794 1.23233 1.50628 0.98464 0.96896 0.90018 1.26079 0.95168 0.97116 1.00734 1.70182 1.46974 1.15383 1.22184 0.84954 0.77816 0.78328 0.77170 1.18084 1.20062 1.20051 0.89336 0.90646 0.94031 0.88578 0.89202 0.75380 0.80634 0.79418 0.80024 0.74805 0.87509 0.87039 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.48 71.98 0.68 -1.82 16 2 C 0.13 2.18 2.73 45.00 0.12 2.31 16 3 H 0.08 1.67 7.58 -2.39 -0.02 1.65 16 4 C 0.12 1.45 5.23 86.38 0.45 1.90 16 5 N -0.72 -9.17 5.34 -466.08 -2.49 -11.66 16 6 C 0.57 9.14 7.78 86.75 0.67 9.82 16 7 O -0.56 -12.01 16.42 -3.94 -0.06 -12.08 16 8 C -0.20 -2.91 5.89 -20.00 -0.12 -3.03 16 9 C 0.01 0.17 9.71 22.72 0.22 0.39 16 10 C -0.18 -1.94 10.07 22.37 0.23 -1.71 16 11 C 0.31 5.43 8.41 84.77 0.71 6.14 16 12 F -0.11 -2.16 17.29 44.97 0.78 -1.39 16 13 N -0.55 -11.19 10.36 -195.74 -2.03 -13.22 16 14 C 0.17 2.74 10.71 85.02 0.91 3.65 16 15 N -0.71 -13.65 4.52 -442.52 -2.00 -15.65 16 16 C 0.54 17.04 7.81 87.66 0.68 17.72 16 17 O -0.56 -22.93 15.52 -3.03 -0.05 -22.97 16 18 C -0.13 -4.77 6.16 71.24 0.44 -4.34 16 19 S -0.15 -7.86 20.57 -56.49 -1.16 -9.03 16 20 C -0.54 -30.27 9.50 67.96 0.65 -29.63 16 21 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 22 C 0.01 0.77 5.49 84.86 0.47 1.24 16 23 N -0.91 -55.14 13.22 21.65 0.29 -54.85 16 24 Si 1.00 43.10 29.55 68.60 2.03 45.12 16 25 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 26 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 28 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.41 4.75 6.20 -92.71 -0.57 4.17 16 34 H 0.18 1.45 7.73 -2.91 -0.02 1.43 16 35 H 0.19 0.74 8.06 -2.91 -0.02 0.72 16 36 H 0.18 2.19 6.42 -2.91 -0.02 2.17 16 37 H 0.41 5.60 8.60 -92.71 -0.80 4.81 16 38 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 39 H 0.11 3.53 8.14 -2.40 -0.02 3.51 16 40 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -80.27 370.78 1.16 -79.11 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -0.26 Total: 13.95 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 6.12 Total: 2.65 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -6.23 Total: -95.38 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.11 Total: -35.05 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.78 Total: -1.39 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.03 kcal Total: -80.27 1.16 -79.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738564918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.430 kcal (2) G-P(sol) polarization free energy of solvation -80.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds