Wall clock time and date at job start Sat Apr 11 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31307 * 118.85672 * 2 1 4 4 C 1.34085 * 120.88242 * 179.97438 * 3 2 1 5 5 S 1.75399 * 131.29948 * 180.02562 * 4 3 2 6 6 C 1.76333 * 92.45704 * 179.97438 * 5 4 3 7 7 C 1.32552 * 111.35166 * 0.04993 * 6 5 4 8 8 C 1.39095 * 119.09982 * 0.02562 * 4 3 2 9 9 C 1.41870 * 117.87943 * 0.03330 * 8 4 3 10 10 N 1.38296 * 120.64225 * 180.22010 * 9 8 4 11 11 C 1.40537 * 119.99944 * 179.71984 * 10 9 8 12 12 C 1.40669 * 126.08569 * 0.03072 * 11 10 9 13 13 N 1.30907 * 108.39276 * 179.97438 * 12 11 10 14 14 N 1.40065 * 108.40978 * 359.97438 * 13 12 11 15 15 C 1.37310 * 126.06946 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99895 * 179.97438 * 15 14 13 17 17 C 1.38974 * 119.99966 * 359.97438 * 15 14 13 18 18 N 1.31306 * 120.00126 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99894 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47591 * 60.00107 * 19 17 15 21 21 H 1.48506 * 109.47230 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47509 * 299.99936 * 19 17 15 23 23 C 1.35687 * 126.08110 * 179.71902 * 11 10 9 24 24 N 1.32058 * 118.85289 * 180.02562 * 2 1 3 25 25 C 1.52881 * 110.19658 * 179.97438 * 7 6 5 26 26 C 1.54131 * 104.89554 * 17.59538 * 25 7 6 27 27 C 1.52598 * 138.12937 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.47040 * 269.98398 * 1 2 3 29 29 H 1.08999 * 109.46932 * 29.97947 * 1 2 3 30 30 H 1.08992 * 109.47448 * 149.97903 * 1 2 3 31 31 H 0.97002 * 120.00011 * 359.73020 * 10 9 8 32 32 H 1.08003 * 125.80486 * 359.97438 * 12 11 10 33 33 H 0.96991 * 120.00128 * 180.02562 * 18 17 15 34 34 H 1.08002 * 126.24859 * 359.97438 * 23 11 10 35 35 H 1.08996 * 110.34829 * 136.44770 * 25 7 6 36 36 H 1.08996 * 110.35506 * 258.63214 * 25 7 6 37 37 H 1.08999 * 111.01551 * 91.47724 * 26 25 7 38 38 H 1.09006 * 111.00543 * 215.30962 * 26 25 7 39 39 H 1.09004 * 110.36602 * 281.31039 * 27 6 5 40 40 H 1.09002 * 110.36462 * 43.63266 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1408 1.1500 0.0000 4 6 3.4808 1.1974 0.0005 5 16 4.5911 2.5552 0.0012 6 6 6.0027 1.4986 0.0023 7 6 5.6493 0.2210 0.0011 8 6 4.1998 0.0067 0.0005 9 6 3.4692 -1.2094 -0.0008 10 7 4.1262 -2.4263 0.0037 11 6 3.3890 -3.6228 0.0083 12 6 1.9865 -3.7319 0.0083 13 7 1.6710 -5.0024 0.0128 14 7 2.8542 -5.7520 0.0153 15 6 2.9432 -7.1222 0.0205 16 1 3.9115 -7.6004 0.0216 17 6 1.7872 -7.8935 0.0245 18 7 0.6099 -7.3121 0.0227 19 14 1.9082 -9.7576 0.0310 20 1 2.6401 -10.2020 1.2442 21 1 0.5431 -10.3423 0.0339 22 1 2.6375 -10.2106 -1.1808 23 6 3.9034 -4.8784 0.0076 24 7 2.1443 -1.1566 -0.0005 25 6 6.8914 -0.6703 0.0014 26 6 8.0407 0.2520 0.4533 27 6 7.5228 1.6330 0.0039 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5141 31 1 5.0958 -2.4541 0.0038 32 1 1.2886 -2.9076 0.0052 33 1 -0.1969 -7.8504 0.0259 34 1 4.9515 -5.1391 0.0030 35 1 6.7670 -1.4935 0.7048 36 1 7.0828 -1.0542 -1.0006 37 1 8.1690 0.2153 1.5351 38 1 8.9696 -0.0025 -0.0572 39 1 7.8840 1.8663 -0.9978 40 1 7.8348 2.4029 0.7095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142803621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:48 Heat of formation + Delta-G solvation = 161.445078 kcal Electronic energy + Delta-G solvation = -26208.677272 eV Core-core repulsion = 22537.978239 eV Total energy + Delta-G solvation = -3670.699033 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.101 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.90091 -39.50963 -38.64957 -36.00871 -33.91572 -33.43238 -31.74288 -30.32361 -30.10202 -28.60537 -27.71676 -26.50929 -25.13789 -23.64735 -22.56604 -21.36460 -20.42478 -19.79295 -19.29475 -18.16714 -17.62337 -16.53303 -16.43244 -15.88037 -15.58514 -15.45594 -15.10218 -14.68244 -14.00945 -13.59137 -13.52722 -13.20211 -13.09394 -12.98144 -12.76898 -12.47944 -12.37358 -12.17544 -12.04801 -11.72531 -11.59175 -11.45655 -11.35627 -11.23338 -11.02996 -10.92947 -10.64694 -10.59854 -10.39666 -9.76160 -9.20220 -8.89987 -8.64586 -8.56753 -8.11200 -7.83584 -6.61891 -6.59039 -4.27276 0.74047 1.15963 1.44618 1.94805 2.19695 2.93491 3.00857 3.05149 3.34647 3.50280 3.80417 4.01693 4.15119 4.30651 4.36915 4.39634 4.59756 4.70006 4.74655 4.96101 4.96437 5.04118 5.28549 5.33244 5.44095 5.50052 5.57431 5.69083 5.77692 5.84824 5.91048 5.94642 6.02388 6.18625 6.26664 6.31963 6.53972 6.78747 6.89979 7.09523 7.15671 7.62546 7.82758 7.94512 8.22967 8.59066 8.68389 9.30254 9.60308 10.33781 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.003000 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.448671 B = 9329.835643 C =11003.483988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.380 3.620 3 N -0.551 5.551 4 C 0.131 3.869 5 S 0.161 5.839 6 C -0.223 4.223 7 C -0.072 4.072 8 C -0.233 4.233 9 C 0.484 3.516 10 N -0.579 5.579 11 C -0.066 4.066 12 C -0.024 4.024 13 N -0.261 5.261 14 N -0.140 5.140 15 C -0.322 4.322 16 H 0.116 0.884 17 C 0.047 3.953 18 N -0.768 5.768 19 Si 0.935 3.065 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.267 1.267 23 C -0.084 4.084 24 N -0.568 5.568 25 C -0.070 4.070 26 C -0.115 4.115 27 C -0.037 4.037 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.409 0.591 32 H 0.189 0.811 33 H 0.276 0.724 34 H 0.145 0.855 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.747 14.166 0.049 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.108 3.892 3 N -0.276 5.276 4 C -0.118 4.118 5 S 0.422 5.578 6 C -0.339 4.339 7 C -0.085 4.085 8 C -0.251 4.251 9 C 0.230 3.770 10 N -0.197 5.197 11 C -0.172 4.172 12 C -0.201 4.201 13 N -0.091 5.091 14 N 0.094 4.906 15 C -0.455 4.455 16 H 0.133 0.867 17 C -0.171 4.171 18 N -0.394 5.394 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.236 4.236 24 N -0.296 5.296 25 C -0.109 4.109 26 C -0.154 4.154 27 C -0.077 4.077 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.246 0.754 32 H 0.205 0.795 33 H 0.087 0.913 34 H 0.162 0.838 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.298 14.647 0.049 16.835 hybrid contribution 2.204 -1.771 -0.007 2.827 sum 10.502 12.876 0.042 16.616 Atomic orbital electron populations 1.20578 0.85595 1.04139 1.03917 1.22955 0.97524 0.82023 0.86736 1.67969 1.05324 1.29727 1.24579 1.23140 0.94650 0.95643 0.98396 1.83734 0.91658 1.03725 1.78708 1.25241 0.99775 0.96660 1.12245 1.20909 0.91326 0.95271 1.00968 1.19445 0.92705 0.94135 1.18824 1.18257 0.88030 0.84082 0.86630 1.41215 1.07646 1.01050 1.69833 1.17327 0.91897 0.83311 1.24696 1.24468 0.93092 0.95825 1.06665 1.78281 1.04380 1.00694 1.25792 1.44570 1.02439 1.04910 1.38702 1.19845 0.95468 0.76794 1.53359 0.86657 1.25638 0.94560 1.01443 0.95424 1.70200 0.97707 1.36607 1.34854 0.85890 0.78356 0.80383 0.79510 1.19133 1.20066 1.19137 1.21196 0.93600 0.88557 1.20222 1.67929 1.06777 1.28745 1.26155 1.21211 0.90008 0.97260 1.02408 1.22279 0.97598 0.93702 1.01843 1.20859 0.86451 0.98302 1.02084 0.89539 0.89832 0.89167 0.75369 0.79453 0.91329 0.83791 0.90585 0.89642 0.90456 0.89848 0.90077 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.30 36.01 0.37 -0.74 16 2 C 0.38 6.63 7.64 -157.38 -1.20 5.42 16 3 N -0.55 -9.64 10.37 -9.68 -0.10 -9.74 16 4 C 0.13 2.20 7.67 -16.25 -0.12 2.07 16 5 S 0.16 2.11 23.23 -107.50 -2.50 -0.39 16 6 C -0.22 -2.69 7.24 -35.27 -0.26 -2.95 16 7 C -0.07 -0.98 6.47 -102.10 -0.66 -1.64 16 8 C -0.23 -3.92 6.07 -104.85 -0.64 -4.56 16 9 C 0.48 9.15 7.55 -154.48 -1.17 7.98 16 10 N -0.58 -10.82 5.59 -9.56 -0.05 -10.87 16 11 C -0.07 -1.50 6.92 -83.86 -0.58 -2.08 16 12 C -0.02 -0.60 10.86 -17.03 -0.18 -0.78 16 13 N -0.26 -7.34 10.39 30.81 0.32 -7.02 16 14 N -0.14 -3.75 3.74 -11.41 -0.04 -3.79 16 15 C -0.32 -8.35 10.25 -14.82 -0.15 -8.50 16 16 H 0.12 2.66 7.83 -52.49 -0.41 2.25 16 17 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -20.89 11.81 55.49 0.66 -20.24 16 19 Si 0.93 18.51 29.55 -169.99 -5.02 13.49 16 20 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 21 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 23 C -0.08 -1.95 11.50 -16.37 -0.19 -2.13 16 24 N -0.57 -11.12 6.50 -9.57 -0.06 -11.18 16 25 C -0.07 -0.70 5.80 -26.20 -0.15 -0.85 16 26 C -0.12 -0.87 7.13 -25.52 -0.18 -1.05 16 27 C -0.04 -0.31 6.82 -26.32 -0.18 -0.49 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.41 6.34 6.59 -40.82 -0.27 6.07 16 32 H 0.19 4.46 5.62 -52.48 -0.30 4.16 16 33 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.14 2.79 8.06 -52.49 -0.42 2.37 16 35 H 0.08 0.74 7.30 -51.93 -0.38 0.36 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -32.46 349.08 -11.23 -43.68 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -4.29 Total: 10.01 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -5.39 Total: -9.22 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 0.72 Total: -62.84 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.50 Total: -0.39 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.46 -11.23 -43.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142803621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.128 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds