Wall clock time and date at job start Sat Apr 11 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46466 * 2 1 4 4 H 1.09001 * 109.47521 * 58.07134 * 3 2 1 5 5 C 1.50697 * 109.46877 * 178.07320 * 3 2 1 6 6 H 1.08004 * 120.00199 * 120.00301 * 5 3 2 7 7 C 1.37879 * 120.00061 * 299.99502 * 5 3 2 8 8 N 1.31514 * 120.00245 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99978 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47457 * 89.99538 * 9 7 5 11 11 H 1.48497 * 109.46934 * 209.99597 * 9 7 5 12 12 H 1.48503 * 109.46773 * 329.99518 * 9 7 5 13 13 N 1.46500 * 109.47279 * 298.07127 * 3 2 1 14 14 S 1.65596 * 119.99827 * 124.00882 * 13 3 2 15 15 O 1.42096 * 106.40374 * 315.64014 * 14 13 3 16 16 O 1.42106 * 106.39980 * 182.72376 * 14 13 3 17 17 C 1.76193 * 107.22027 * 69.18502 * 14 13 3 18 18 C 1.38386 * 120.14819 * 110.15785 * 17 14 13 19 19 C 1.38204 * 120.22488 * 180.02562 * 18 17 14 20 20 C 1.38385 * 120.21816 * 359.94615 * 19 18 17 21 21 C 1.38422 * 119.70338 * 0.02562 * 20 19 18 22 22 C 1.38426 * 120.14161 * 290.13872 * 17 14 13 23 23 O 1.36458 * 120.31175 * 0.09192 * 22 17 14 24 24 C 1.42909 * 115.92179 * 248.27231 * 23 22 17 25 25 C 1.52076 * 110.73342 * 275.59416 * 24 23 22 26 26 C 1.52053 * 112.37512 * 64.85889 * 25 24 23 27 27 O 1.36468 * 120.31939 * 180.02562 * 21 20 19 28 28 H 1.08997 * 109.47583 * 68.66552 * 1 2 3 29 29 H 1.09001 * 109.46629 * 188.66094 * 1 2 3 30 30 H 1.09000 * 109.47579 * 308.65635 * 1 2 3 31 31 H 1.09001 * 109.47293 * 240.00598 * 2 1 3 32 32 H 1.08994 * 109.47554 * 119.99414 * 2 1 3 33 33 H 0.97002 * 120.00315 * 180.02562 * 8 7 5 34 34 H 0.97006 * 119.99841 * 304.00944 * 13 3 2 35 35 H 1.08002 * 119.88367 * 0.02562 * 18 17 14 36 36 H 1.08003 * 119.89397 * 179.97438 * 19 18 17 37 37 H 1.07990 * 120.15108 * 179.97438 * 20 19 18 38 38 H 1.08993 * 109.21813 * 35.94391 * 24 23 22 39 39 H 1.09001 * 109.21786 * 155.32573 * 24 23 22 40 40 H 1.09007 * 108.93633 * 304.09227 * 25 24 23 41 41 H 1.08998 * 108.86417 * 185.58555 * 25 24 23 42 42 H 1.08997 * 109.22014 * 174.77858 * 26 25 24 43 43 H 1.09011 * 109.21611 * 55.40483 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6485 1.9664 0.8722 5 6 3.5461 1.4430 0.0478 6 1 4.1116 1.9017 -0.7499 7 6 4.2023 0.8579 1.1099 8 7 5.5168 0.8577 1.1513 9 14 3.2243 0.0640 2.4893 10 1 2.9876 -1.3665 2.1686 11 1 3.9867 0.1670 3.7594 12 1 1.9210 0.7605 2.6363 13 7 1.5898 2.1197 -1.2187 14 16 0.7171 3.5229 -1.1121 15 8 -0.2537 3.3155 -0.0954 16 8 0.3819 3.8891 -2.4436 17 6 1.8069 4.7707 -0.5123 18 6 2.2159 5.7961 -1.3468 19 6 3.0711 6.7753 -0.8782 20 6 3.5233 6.7376 0.4292 21 6 3.1157 5.7137 1.2667 22 6 2.2575 4.7298 0.7959 23 8 1.8632 3.7235 1.6290 24 6 1.0035 4.1042 2.7052 25 6 1.8136 4.6148 3.8866 26 6 2.5642 5.8969 3.5629 27 8 3.5536 5.6646 2.5583 28 1 -0.3634 0.3739 -0.9572 29 1 -0.3632 -1.0160 0.1548 30 1 -0.3634 0.6419 0.8025 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 5.9785 0.4457 1.8984 34 1 1.8030 1.7459 -2.0881 35 1 1.8655 5.8311 -2.3678 36 1 3.3872 7.5729 -1.5342 37 1 4.1919 7.5032 0.7941 38 1 0.3295 4.8903 2.3652 39 1 0.4177 3.2403 3.0193 40 1 2.5323 3.8494 4.1800 41 1 1.1390 4.8018 4.7221 42 1 3.0499 6.2661 4.4661 43 1 1.8576 6.6454 3.2041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593577325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:19 Heat of formation + Delta-G solvation = -108.887256 kcal Electronic energy + Delta-G solvation = -30649.894586 eV Core-core repulsion = 26595.578642 eV Total energy + Delta-G solvation = -4054.315945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.71918 -37.57156 -37.43092 -36.62293 -36.05254 -35.34637 -32.79597 -32.10582 -30.98908 -30.76618 -28.99622 -27.10759 -26.44751 -23.39255 -22.59053 -22.01160 -21.62949 -20.52888 -19.13097 -18.49278 -17.69275 -17.02525 -16.76286 -16.31084 -15.82158 -15.69876 -15.25149 -15.11447 -14.84087 -14.54792 -14.06597 -13.84875 -13.75062 -13.45890 -13.12464 -12.70488 -12.62025 -12.20312 -12.16383 -12.04165 -11.83740 -11.67307 -11.56974 -11.49264 -11.18158 -11.07487 -10.94444 -10.80485 -10.56650 -10.52535 -10.29122 -9.89018 -9.62587 -9.56529 -9.34840 -9.09691 -8.53612 -8.33493 -8.26193 -6.04367 -4.03206 0.80181 1.10134 1.24779 3.26232 3.28008 3.39437 3.41867 3.56893 3.68781 3.86138 4.22014 4.43303 4.71471 4.75929 4.83116 5.04238 5.11393 5.15558 5.27466 5.35857 5.36753 5.40122 5.50604 5.59622 5.78472 5.87298 5.90408 5.99325 6.05686 6.12212 6.13129 6.22377 6.31320 6.42207 6.60893 6.65618 6.70288 6.85914 7.03803 7.24930 7.40885 7.63916 7.70610 7.93832 8.53301 8.98958 9.57668 11.08835 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.007758 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.789581 B = 3608.482261 C = 4780.240475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.137 4.137 3 C 0.240 3.760 4 H 0.078 0.922 5 C -0.520 4.520 6 H 0.077 0.923 7 C 0.081 3.919 8 N -0.896 5.896 9 Si 0.874 3.126 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.257 1.257 13 N -1.088 6.088 14 S 2.700 3.300 15 O -0.958 6.958 16 O -0.982 6.982 17 C -0.675 4.675 18 C -0.020 4.020 19 C -0.142 4.142 20 C -0.069 4.069 21 C 0.047 3.953 22 C 0.193 3.807 23 O -0.292 6.292 24 C 0.062 3.938 25 C -0.192 4.192 26 C 0.060 3.940 27 O -0.311 6.311 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.263 0.737 34 H 0.410 0.590 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.061 0.939 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.321 10.896 1.934 13.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.176 4.176 3 C 0.134 3.866 4 H 0.095 0.905 5 C -0.559 4.559 6 H 0.095 0.905 7 C -0.122 4.122 8 N -0.534 5.534 9 Si 0.705 3.295 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.182 1.182 13 N -0.847 5.847 14 S 2.787 3.213 15 O -0.948 6.948 16 O -0.972 6.972 17 C -0.760 4.760 18 C -0.039 4.039 19 C -0.161 4.161 20 C -0.087 4.087 21 C 0.002 3.998 22 C 0.147 3.853 23 O -0.208 6.208 24 C -0.012 4.012 25 C -0.230 4.230 26 C -0.015 4.015 27 O -0.228 6.228 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.243 0.757 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.120 0.880 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.848 10.819 2.115 14.135 hybrid contribution 0.534 -0.308 0.824 1.029 sum -8.314 10.511 2.939 13.720 Atomic orbital electron populations 1.21851 0.97393 1.00152 1.01649 1.22239 0.93981 0.99957 1.01457 1.19346 0.95728 0.89050 0.82440 0.90462 1.21218 0.88775 1.37705 1.08218 0.90454 1.24805 0.94568 0.95448 0.97386 1.69879 1.07120 1.44808 1.31564 0.87051 0.80848 0.79741 0.81890 1.20745 1.22535 1.18194 1.55190 1.74478 1.39228 1.15834 1.01558 0.73873 0.72932 0.72917 1.93539 1.56345 1.84971 1.59911 1.93518 1.83105 1.83811 1.36796 1.31103 1.22933 1.19113 1.02846 1.20851 0.93284 0.90908 0.98854 1.21090 0.99393 1.00217 0.95359 1.21299 0.97918 0.95621 0.93904 1.19112 0.98927 0.95397 0.86382 1.18469 0.91163 0.86517 0.89193 1.86624 1.65634 1.28803 1.39692 1.22645 0.90864 1.02111 0.85625 1.22542 1.01231 0.99591 0.99639 1.22638 0.91345 0.96148 0.91372 1.86440 1.34196 1.90782 1.11350 0.93406 0.94116 0.92468 0.91822 0.92627 0.92741 0.75651 0.83618 0.84600 0.84519 0.92099 0.87207 0.89344 0.89280 0.87995 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.67 37.16 0.36 -2.46 16 2 C -0.14 -2.91 5.13 -26.73 -0.14 -3.05 16 3 C 0.24 5.45 1.53 -69.08 -0.11 5.35 16 4 H 0.08 1.82 3.39 -51.93 -0.18 1.64 16 5 C -0.52 -13.98 9.42 -34.44 -0.32 -14.31 16 6 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 7 C 0.08 2.27 5.45 -17.82 -0.10 2.18 16 8 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 9 Si 0.87 21.55 24.39 -169.99 -4.15 17.41 16 10 H -0.28 -6.73 6.85 56.52 0.39 -6.35 16 11 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 12 H -0.26 -5.97 6.53 56.52 0.37 -5.60 16 13 N -1.09 -21.55 4.86 -5.88 -0.03 -21.58 16 14 S 2.70 50.99 5.46 -107.50 -0.59 50.40 16 15 O -0.96 -19.05 16.21 -63.74 -1.03 -20.08 16 16 O -0.98 -18.90 16.99 -57.17 -0.97 -19.87 16 17 C -0.67 -12.37 5.94 -39.46 -0.23 -12.60 16 18 C -0.02 -0.31 9.55 -39.54 -0.38 -0.68 16 19 C -0.14 -1.90 10.04 -39.54 -0.40 -2.29 16 20 C -0.07 -1.00 10.01 -39.46 -0.39 -1.39 16 21 C 0.05 0.83 5.73 -39.31 -0.23 0.60 16 22 C 0.19 3.73 5.66 -39.31 -0.22 3.50 16 23 O -0.29 -5.91 5.45 -46.66 -0.25 -6.16 16 24 C 0.06 0.98 6.33 36.69 0.23 1.21 16 25 C -0.19 -2.55 5.92 -27.68 -0.16 -2.71 16 26 C 0.06 0.77 6.51 36.68 0.24 1.01 16 27 O -0.31 -5.41 10.16 -36.68 -0.37 -5.79 16 28 H 0.05 0.82 7.92 -51.93 -0.41 0.40 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.25 3.24 -51.93 -0.17 1.09 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.41 7.26 8.96 -34.47 -0.31 6.95 16 35 H 0.15 1.97 7.35 -52.49 -0.39 1.58 16 36 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 39 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 40 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.60 7.93 -51.92 -0.41 0.19 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -34.10 351.04 -8.86 -42.96 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.68 Total: 9.33 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -1.85 Total: -25.65 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.75 Total: -47.84 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -2.63 Total: -51.90 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.15 Total: 17.41 kcal Atomic # 16 Polarization: 50.99 SS G_CDS: -0.59 Total: 50.40 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.10 -8.86 -42.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593577325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.924 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds