Wall clock time and date at job start Sat Apr 11 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47176 * 2 1 4 4 N 1.46497 * 109.47269 * 180.02562 * 3 2 1 5 5 C 1.46495 * 120.00223 * 82.68632 * 4 3 2 6 6 C 1.50700 * 109.47115 * 81.25897 * 5 4 3 7 7 O 1.20836 * 120.00022 * 4.95361 * 6 5 4 8 8 O 1.34225 * 120.00385 * 184.95205 * 6 5 4 9 9 C 1.45198 * 117.00503 * 185.06610 * 8 6 5 10 10 S 1.65603 * 119.99929 * 262.68586 * 4 3 2 11 11 O 1.42103 * 106.40415 * 15.69870 * 10 4 3 12 12 O 1.42093 * 106.40233 * 148.61872 * 10 4 3 13 13 C 1.76203 * 107.21973 * 262.16214 * 10 4 3 14 14 C 1.37637 * 120.12455 * 246.80810 * 13 10 4 15 15 C 1.38621 * 120.24463 * 179.97438 * 14 13 10 16 16 C 1.38653 * 120.50234 * 0.02562 * 15 14 13 17 17 C 1.37598 * 120.24841 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12834 * 66.53263 * 13 10 4 19 19 C 1.41396 * 120.24338 * 359.97438 * 18 13 10 20 20 H 1.07999 * 120.00256 * 34.56337 * 19 18 13 21 21 C 1.39950 * 119.99956 * 214.57019 * 19 18 13 22 22 N 1.30826 * 120.00062 * 6.28482 * 21 19 18 23 23 Si 1.86800 * 119.99865 * 186.29391 * 21 19 18 24 24 H 1.48497 * 109.47378 * 95.02702 * 23 21 19 25 25 H 1.48501 * 109.46875 * 215.02612 * 23 21 19 26 26 H 1.48498 * 109.46914 * 335.02499 * 23 21 19 27 27 H 1.09001 * 109.46737 * 299.99666 * 1 2 3 28 28 H 1.08997 * 109.47443 * 60.00088 * 1 2 3 29 29 H 1.09004 * 109.46913 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47142 * 239.99982 * 2 1 3 31 31 H 1.08997 * 109.47443 * 119.99912 * 2 1 3 32 32 H 1.09009 * 109.46870 * 59.99867 * 3 2 1 33 33 H 1.08999 * 109.47378 * 300.00304 * 3 2 1 34 34 H 1.08997 * 109.47457 * 201.25467 * 5 4 3 35 35 H 1.09004 * 109.47124 * 321.26287 * 5 4 3 36 36 H 1.09001 * 109.47482 * 184.92590 * 9 8 6 37 37 H 1.08999 * 109.47448 * 304.93134 * 9 8 6 38 38 H 1.09003 * 109.47107 * 64.92654 * 9 8 6 39 39 H 1.08002 * 119.88229 * 0.02562 * 14 13 10 40 40 H 1.08003 * 119.74466 * 179.97438 * 15 14 13 41 41 H 1.07995 * 119.87690 * 179.97438 * 16 15 14 42 42 H 1.07994 * 120.12771 * 179.97438 * 17 16 15 43 43 H 0.96995 * 120.00165 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2370 1.2812 -1.2593 6 6 4.3008 2.6051 -1.9765 7 8 3.8669 3.6007 -1.4468 8 8 4.8398 2.6784 -3.2036 9 6 4.9713 4.0010 -3.7880 10 16 4.3336 1.6249 1.4216 11 8 3.3981 1.3867 2.4644 12 8 5.5419 0.8911 1.2789 13 6 4.7932 3.3216 1.5436 14 6 6.1196 3.6839 1.4839 15 6 6.4840 5.0180 1.5791 16 6 5.5193 6.0015 1.7358 17 6 4.1873 5.6622 1.7991 18 6 3.8052 4.3116 1.6967 19 6 2.4390 3.9517 1.7529 20 1 2.1435 3.0252 2.2226 21 6 1.4696 4.7960 1.1998 22 7 1.8336 5.8553 0.5238 23 14 -0.3440 4.4106 1.4269 24 1 -0.8672 5.1622 2.5959 25 1 -1.0913 4.8096 0.2072 26 1 -0.5153 2.9538 1.6580 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 5.2481 0.9326 -1.0495 35 1 3.7242 0.5524 -1.8870 36 1 5.3380 3.9117 -4.8105 37 1 3.9995 4.4947 -3.7923 38 1 5.6752 4.5898 -3.1997 39 1 6.8794 2.9262 1.3615 40 1 7.5272 5.2932 1.5316 41 1 5.8145 7.0378 1.8093 42 1 3.4376 6.4298 1.9216 43 1 1.1618 6.4407 0.1407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601303541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:25 Heat of formation + Delta-G solvation = -135.829789 kcal Electronic energy + Delta-G solvation = -30335.345895 eV Core-core repulsion = 26279.861635 eV Total energy + Delta-G solvation = -4055.484260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.91962 -37.52729 -36.83503 -36.44391 -35.55232 -34.92304 -33.73839 -32.66145 -30.14172 -29.50757 -28.75706 -26.78306 -25.44701 -24.67046 -21.69273 -21.29242 -21.06581 -20.60706 -18.17726 -17.58908 -17.29776 -17.18234 -16.32163 -16.09220 -15.73787 -15.38753 -15.26768 -14.46488 -14.32735 -14.09244 -13.49430 -13.31120 -13.19759 -13.11474 -12.89939 -12.68939 -12.13058 -12.00058 -11.88811 -11.83743 -11.66137 -11.39719 -11.24918 -11.20465 -11.17790 -11.11156 -11.08382 -10.87057 -10.59612 -10.43432 -10.35926 -10.12733 -9.99418 -9.79112 -9.38849 -9.16326 -8.57006 -7.93219 -7.43033 -6.88710 -4.66886 1.40844 2.41633 2.74247 2.78693 2.99654 3.02882 3.03969 3.13958 3.76958 3.82572 4.50835 4.68812 5.05171 5.10274 5.24260 5.34759 5.35067 5.38986 5.46538 5.51521 5.53809 5.58280 5.75722 5.80454 6.05375 6.06582 6.12383 6.17043 6.27728 6.33964 6.43514 6.58468 6.68710 6.80059 6.85968 7.00753 7.06877 7.20353 7.42676 7.56629 7.78473 7.87450 8.03003 8.29887 8.43713 8.64169 8.75595 10.05425 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008323 B = 0.007739 C = 0.006493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3363.396635 B = 3617.328663 C = 4311.617033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 C 0.117 3.883 4 N -0.972 5.972 5 C 0.135 3.865 6 C 0.411 3.589 7 O -0.438 6.438 8 O -0.372 6.372 9 C 0.039 3.961 10 S 2.699 3.301 11 O -0.965 6.965 12 O -0.996 6.996 13 C -0.762 4.762 14 C -0.009 4.009 15 C -0.244 4.244 16 C -0.079 4.079 17 C -0.148 4.148 18 C 0.214 3.786 19 C -0.481 4.481 20 H 0.113 0.887 21 C 0.086 3.914 22 N -0.772 5.772 23 Si 0.896 3.104 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.249 1.249 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 -5.566 -7.313 9.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C -0.008 4.008 4 N -0.804 5.804 5 C 0.006 3.994 6 C 0.247 3.753 7 O -0.319 6.319 8 O -0.290 6.290 9 C -0.055 4.055 10 S 2.798 3.202 11 O -0.955 6.955 12 O -0.987 6.987 13 C -0.858 4.858 14 C -0.029 4.029 15 C -0.265 4.265 16 C -0.098 4.098 17 C -0.167 4.167 18 C 0.210 3.790 19 C -0.509 4.509 20 H 0.131 0.869 21 C -0.135 4.135 22 N -0.395 5.395 23 Si 0.719 3.281 24 H -0.191 1.191 25 H -0.200 1.200 26 H -0.172 1.172 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.088 0.912 34 H 0.144 0.856 35 H 0.131 0.869 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.137 0.863 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.725 -5.736 -6.725 8.869 hybrid contribution -0.688 1.251 -0.513 1.517 sum -1.413 -4.485 -7.238 8.632 Atomic orbital electron populations 1.21706 0.95526 1.01384 1.02213 1.22010 0.96063 0.98169 1.02207 1.21689 0.77702 0.95774 1.05616 1.57392 1.15129 1.87504 1.20400 1.20639 1.00449 0.91756 0.86560 1.24732 0.76635 0.93626 0.80275 1.90962 1.40014 1.36553 1.64389 1.86444 1.75804 1.34056 1.32704 1.23124 1.02368 0.82249 0.97762 1.01247 0.71942 0.74835 0.72155 1.93482 1.62940 1.86242 1.52861 1.93433 1.46705 1.72175 1.86386 1.29716 1.00927 1.21737 1.33418 1.20198 0.93535 0.95783 0.93367 1.20446 0.97242 0.93160 1.15639 1.20872 0.94148 0.96959 0.97821 1.21466 0.94111 0.97286 1.03881 1.16860 0.91062 0.90346 0.80769 1.20358 0.90854 1.07318 1.32416 0.86926 1.25855 1.01429 0.93638 0.92573 1.69793 1.36429 1.10702 1.22617 0.86480 0.81519 0.81141 0.78921 1.19079 1.19957 1.17236 0.92179 0.92838 0.92778 0.92117 0.91450 0.86934 0.91196 0.85616 0.86904 0.88935 0.92066 0.92104 0.87799 0.88963 0.89088 0.86302 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.15 -2.09 6.24 -26.73 -0.17 -2.26 16 3 C 0.12 2.07 4.80 -4.04 -0.02 2.06 16 4 N -0.97 -18.04 2.30 -115.67 -0.27 -18.31 16 5 C 0.13 2.08 6.29 -5.20 -0.03 2.05 16 6 C 0.41 7.25 7.98 36.01 0.29 7.54 16 7 O -0.44 -9.58 15.65 -18.76 -0.29 -9.87 16 8 O -0.37 -5.71 10.56 -39.24 -0.41 -6.13 16 9 C 0.04 0.52 10.65 101.05 1.08 1.60 16 10 S 2.70 59.40 5.09 -107.50 -0.55 58.85 16 11 O -0.96 -22.94 14.51 -57.17 -0.83 -23.77 16 12 O -1.00 -22.14 15.69 -57.17 -0.90 -23.04 16 13 C -0.76 -18.49 5.58 -38.87 -0.22 -18.71 16 14 C -0.01 -0.20 9.54 -39.66 -0.38 -0.58 16 15 C -0.24 -5.50 10.05 -39.29 -0.39 -5.89 16 16 C -0.08 -1.83 10.02 -39.66 -0.40 -2.23 16 17 C -0.15 -3.74 8.62 -38.87 -0.34 -4.07 16 18 C 0.21 5.50 5.49 -106.82 -0.59 4.91 16 19 C -0.48 -11.98 6.30 -37.74 -0.24 -12.22 16 20 H 0.11 2.81 4.20 -52.49 -0.22 2.59 16 21 C 0.09 2.03 5.30 -17.34 -0.09 1.94 16 22 N -0.77 -18.84 11.04 55.55 0.61 -18.22 16 23 Si 0.90 17.78 29.22 -169.99 -4.97 12.81 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.25 -4.72 7.11 56.52 0.40 -4.32 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.11 2.28 4.04 -51.92 -0.21 2.07 16 33 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 34 H 0.13 1.82 7.00 -51.93 -0.36 1.46 16 35 H 0.11 1.29 7.91 -51.93 -0.41 0.88 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.86 7.97 -51.93 -0.41 0.45 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 2.22 7.32 -52.49 -0.38 1.84 16 40 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 41 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.12 3.05 6.55 -52.49 -0.34 2.71 16 43 H 0.28 6.31 8.30 -40.82 -0.34 5.98 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -30.60 366.46 -8.90 -39.50 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -5.70 Total: 10.10 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: -1.13 Total: -27.44 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.35 Total: -36.53 kcal Atomic # 8 Polarization: -60.37 SS G_CDS: -2.43 Total: -62.81 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -4.97 Total: 12.81 kcal Atomic # 16 Polarization: 59.40 SS G_CDS: -0.55 Total: 58.85 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.60 -8.90 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601303541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.331 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds