Wall clock time and date at job start Sat Apr 11 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47176 * 2 1 4 4 N 1.46497 * 109.47269 * 180.02562 * 3 2 1 5 5 C 1.46495 * 120.00223 * 82.68632 * 4 3 2 6 6 C 1.50700 * 109.47115 * 81.25897 * 5 4 3 7 7 O 1.20836 * 120.00022 * 4.95361 * 6 5 4 8 8 O 1.34225 * 120.00385 * 184.95205 * 6 5 4 9 9 C 1.45198 * 117.00503 * 185.06610 * 8 6 5 10 10 S 1.65603 * 119.99929 * 262.68586 * 4 3 2 11 11 O 1.42103 * 106.40415 * 15.69870 * 10 4 3 12 12 O 1.42093 * 106.40233 * 148.61872 * 10 4 3 13 13 C 1.76203 * 107.21973 * 262.16214 * 10 4 3 14 14 C 1.37637 * 120.12455 * 246.80810 * 13 10 4 15 15 C 1.38621 * 120.24463 * 179.97438 * 14 13 10 16 16 C 1.38653 * 120.50234 * 0.02562 * 15 14 13 17 17 C 1.37598 * 120.24841 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12834 * 66.53263 * 13 10 4 19 19 C 1.41396 * 120.24338 * 359.97438 * 18 13 10 20 20 H 1.07999 * 120.00256 * 34.56337 * 19 18 13 21 21 C 1.39950 * 119.99956 * 214.57019 * 19 18 13 22 22 N 1.30826 * 120.00062 * 6.28482 * 21 19 18 23 23 Si 1.86800 * 119.99865 * 186.29391 * 21 19 18 24 24 H 1.48497 * 109.47378 * 95.02702 * 23 21 19 25 25 H 1.48501 * 109.46875 * 215.02612 * 23 21 19 26 26 H 1.48498 * 109.46914 * 335.02499 * 23 21 19 27 27 H 1.09001 * 109.46737 * 299.99666 * 1 2 3 28 28 H 1.08997 * 109.47443 * 60.00088 * 1 2 3 29 29 H 1.09004 * 109.46913 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47142 * 239.99982 * 2 1 3 31 31 H 1.08997 * 109.47443 * 119.99912 * 2 1 3 32 32 H 1.09009 * 109.46870 * 59.99867 * 3 2 1 33 33 H 1.08999 * 109.47378 * 300.00304 * 3 2 1 34 34 H 1.08997 * 109.47457 * 201.25467 * 5 4 3 35 35 H 1.09004 * 109.47124 * 321.26287 * 5 4 3 36 36 H 1.09001 * 109.47482 * 184.92590 * 9 8 6 37 37 H 1.08999 * 109.47448 * 304.93134 * 9 8 6 38 38 H 1.09003 * 109.47107 * 64.92654 * 9 8 6 39 39 H 1.08002 * 119.88229 * 0.02562 * 14 13 10 40 40 H 1.08003 * 119.74466 * 179.97438 * 15 14 13 41 41 H 1.07995 * 119.87690 * 179.97438 * 16 15 14 42 42 H 1.07994 * 120.12771 * 179.97438 * 17 16 15 43 43 H 0.96995 * 120.00165 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2370 1.2812 -1.2593 6 6 4.3008 2.6051 -1.9765 7 8 3.8669 3.6007 -1.4468 8 8 4.8398 2.6784 -3.2036 9 6 4.9713 4.0010 -3.7880 10 16 4.3336 1.6249 1.4216 11 8 3.3981 1.3867 2.4644 12 8 5.5419 0.8911 1.2789 13 6 4.7932 3.3216 1.5436 14 6 6.1196 3.6839 1.4839 15 6 6.4840 5.0180 1.5791 16 6 5.5193 6.0015 1.7358 17 6 4.1873 5.6622 1.7991 18 6 3.8052 4.3116 1.6967 19 6 2.4390 3.9517 1.7529 20 1 2.1435 3.0252 2.2226 21 6 1.4696 4.7960 1.1998 22 7 1.8336 5.8553 0.5238 23 14 -0.3440 4.4106 1.4269 24 1 -0.8672 5.1622 2.5959 25 1 -1.0913 4.8096 0.2072 26 1 -0.5153 2.9538 1.6580 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 5.2481 0.9326 -1.0495 35 1 3.7242 0.5524 -1.8870 36 1 5.3380 3.9117 -4.8105 37 1 3.9995 4.4947 -3.7923 38 1 5.6752 4.5898 -3.1997 39 1 6.8794 2.9262 1.3615 40 1 7.5272 5.2932 1.5316 41 1 5.8145 7.0378 1.8093 42 1 3.4376 6.4298 1.9216 43 1 1.1618 6.4407 0.1407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601303541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:24 Heat of formation + Delta-G solvation = -154.239241 kcal Electronic energy + Delta-G solvation = -30336.144189 eV Core-core repulsion = 26279.861635 eV Total energy + Delta-G solvation = -4056.282554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.27238 -39.33241 -38.28694 -38.07231 -36.97364 -36.68078 -35.53460 -33.86196 -31.96079 -31.33684 -30.00871 -27.96828 -27.23500 -25.96202 -23.44722 -22.90984 -22.52136 -21.95695 -19.79701 -19.36340 -18.90790 -18.54353 -17.76180 -17.67288 -17.13588 -17.05379 -16.77855 -16.03148 -15.85988 -15.47045 -15.08381 -14.95011 -14.66260 -14.49452 -14.40995 -14.09262 -13.76635 -13.51965 -13.42944 -13.14400 -13.01640 -12.96977 -12.89514 -12.86256 -12.82335 -12.57456 -12.40623 -12.31691 -12.24131 -12.02695 -11.64845 -11.59849 -11.47136 -11.34788 -11.15062 -10.93556 -10.04021 -9.73439 -9.28307 -8.66132 -6.52885 -0.26178 0.58776 1.02219 1.35866 1.39357 1.45623 1.49722 1.74429 2.17432 2.26002 2.70971 2.96126 3.48900 3.63867 3.79882 3.99090 4.18424 4.21558 4.30022 4.34443 4.38662 4.41382 4.45700 4.49205 4.53693 4.71295 4.72425 4.89286 4.93501 5.02557 5.08523 5.19489 5.26098 5.33452 5.38364 5.49299 5.52671 5.60233 5.65130 5.75379 5.92864 6.02467 6.19985 6.57890 6.81129 6.91553 6.96973 8.29993 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008323 B = 0.007739 C = 0.006493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3363.396635 B = 3617.328663 C = 4311.617033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.114 3.886 4 N -0.967 5.967 5 C 0.128 3.872 6 C 0.413 3.587 7 O -0.488 6.488 8 O -0.364 6.364 9 C 0.036 3.964 10 S 2.714 3.286 11 O -0.988 6.988 12 O -1.000 7.000 13 C -0.780 4.780 14 C -0.022 4.022 15 C -0.249 4.249 16 C -0.081 4.081 17 C -0.179 4.179 18 C 0.192 3.808 19 C -0.496 4.496 20 H 0.106 0.894 21 C 0.056 3.944 22 N -0.800 5.800 23 Si 0.945 3.055 24 H -0.265 1.265 25 H -0.264 1.264 26 H -0.238 1.238 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.139 0.861 35 H 0.163 0.837 36 H 0.136 0.864 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.679 -7.223 -9.035 11.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C -0.011 4.011 4 N -0.802 5.802 5 C 0.000 4.000 6 C 0.252 3.748 7 O -0.372 6.372 8 O -0.281 6.281 9 C -0.058 4.058 10 S 2.812 3.188 11 O -0.979 6.979 12 O -0.991 6.991 13 C -0.874 4.874 14 C -0.042 4.042 15 C -0.269 4.269 16 C -0.099 4.099 17 C -0.198 4.198 18 C 0.188 3.812 19 C -0.524 4.524 20 H 0.124 0.876 21 C -0.162 4.162 22 N -0.423 5.423 23 Si 0.765 3.235 24 H -0.190 1.190 25 H -0.188 1.188 26 H -0.161 1.161 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.156 0.844 35 H 0.180 0.820 36 H 0.154 0.846 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.134 0.866 42 H 0.122 0.878 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.755 -7.383 -8.454 11.249 hybrid contribution -0.555 1.777 -0.066 1.863 sum -1.310 -5.606 -8.520 10.282 Atomic orbital electron populations 1.21730 0.94357 1.02878 1.01885 1.22000 0.97057 0.95716 1.03237 1.21742 0.77058 0.97961 1.04323 1.57116 1.15518 1.86959 1.20588 1.21098 1.01520 0.91669 0.85688 1.25180 0.75406 0.93732 0.80519 1.90969 1.42342 1.38280 1.65605 1.86444 1.75012 1.34983 1.31652 1.23346 1.01572 0.81257 0.99614 1.00718 0.71698 0.73806 0.72622 1.93443 1.63468 1.86218 1.54762 1.93416 1.47110 1.71766 1.86779 1.30172 1.01276 1.23037 1.32934 1.20543 0.93705 0.96743 0.93169 1.20820 0.98682 0.92796 1.14584 1.21183 0.93526 0.98582 0.96646 1.21500 0.94925 0.97246 1.06172 1.17127 0.91913 0.90837 0.81373 1.20394 0.91210 1.07561 1.33232 0.87641 1.26498 1.04800 0.93176 0.91774 1.69852 1.37742 1.11511 1.23227 0.85736 0.76996 0.81580 0.79155 1.18965 1.18802 1.16100 0.93881 0.91846 0.90374 0.89011 0.92439 0.89837 0.90942 0.84377 0.81982 0.84622 0.93296 0.93398 0.86193 0.85868 0.86613 0.87762 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.91 71.98 0.71 -2.80 16 2 C -0.14 -3.73 6.24 30.59 0.19 -3.54 16 3 C 0.11 3.92 4.80 86.38 0.41 4.34 16 4 N -0.97 -34.83 2.30 -519.86 -1.19 -36.03 16 5 C 0.13 3.64 6.29 85.63 0.54 4.18 16 6 C 0.41 14.06 7.98 71.24 0.57 14.63 16 7 O -0.49 -21.46 15.65 21.93 0.34 -21.12 16 8 O -0.36 -10.45 10.56 -51.36 -0.54 -10.99 16 9 C 0.04 0.90 10.65 113.37 1.21 2.11 16 10 S 2.71 119.12 5.09 -56.49 -0.29 118.83 16 11 O -0.99 -47.74 14.51 -128.00 -1.86 -49.59 16 12 O -1.00 -43.44 15.69 -128.00 -2.01 -45.45 16 13 C -0.78 -38.39 5.58 22.73 0.13 -38.27 16 14 C -0.02 -1.01 9.54 22.22 0.21 -0.80 16 15 C -0.25 -11.02 10.05 22.46 0.23 -10.79 16 16 C -0.08 -3.75 10.02 22.22 0.22 -3.53 16 17 C -0.18 -9.35 8.62 22.73 0.20 -9.15 16 18 C 0.19 10.15 5.49 -21.29 -0.12 10.03 16 19 C -0.50 -25.48 6.30 23.46 0.15 -25.33 16 20 H 0.11 5.47 4.20 -2.91 -0.01 5.46 16 21 C 0.06 2.71 5.30 85.26 0.45 3.16 16 22 N -0.80 -40.23 11.04 21.83 0.24 -39.99 16 23 Si 0.95 36.66 29.22 68.60 2.00 38.67 16 24 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 25 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 26 H -0.24 -8.74 7.11 99.48 0.71 -8.03 16 27 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.84 7.92 -2.39 -0.02 1.83 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 3.42 4.04 -2.38 -0.01 3.41 16 33 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 34 H 0.14 3.64 7.00 -2.39 -0.02 3.63 16 35 H 0.16 3.02 7.91 -2.39 -0.02 3.00 16 36 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.05 1.36 7.97 -2.39 -0.02 1.34 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.12 5.03 7.32 -2.91 -0.02 5.01 16 40 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 41 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.10 5.63 6.55 -2.91 -0.02 5.61 16 43 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 Total: -1.00 -68.43 366.46 2.83 -65.60 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: 1.03 Total: 35.83 kcal Atomic # 6 Polarization: -60.86 SS G_CDS: 5.10 Total: -55.76 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -0.95 Total: -76.02 kcal Atomic # 8 Polarization: -123.09 SS G_CDS: -4.06 Total: -127.15 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.00 Total: 38.67 kcal Atomic # 16 Polarization: 119.12 SS G_CDS: -0.29 Total: 118.83 kcal Total: -68.43 2.83 -65.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601303541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.643 kcal (2) G-P(sol) polarization free energy of solvation -68.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds