Wall clock time and date at job start Sat Apr 11 2020 06:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34707 * 117.00149 * 2 1 4 4 O 1.21469 * 119.99893 * 359.97438 * 3 2 1 5 5 C 1.47727 * 119.99768 * 180.02562 * 3 2 1 6 6 C 1.39641 * 120.15343 * 359.97438 * 5 3 2 7 7 C 1.37918 * 119.85009 * 180.02562 * 6 5 3 8 8 C 1.38393 * 120.14911 * 359.72778 * 7 6 5 9 9 C 1.38348 * 120.30265 * 0.54927 * 8 7 6 10 10 S 1.76198 * 119.92494 * 179.72791 * 9 8 7 11 11 O 1.42103 * 106.40291 * 156.18781 * 10 9 8 12 12 O 1.42096 * 106.40316 * 23.26284 * 10 9 8 13 13 N 1.65604 * 107.21445 * 269.72197 * 10 9 8 14 14 C 1.46500 * 120.00348 * 269.99913 * 13 10 9 15 15 C 1.50698 * 109.47329 * 265.00269 * 14 13 10 16 16 H 1.08002 * 119.99453 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00124 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99968 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00106 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47110 * 89.99851 * 19 17 15 21 21 H 1.48497 * 109.47309 * 209.99641 * 19 17 15 22 22 H 1.48493 * 109.47267 * 329.99940 * 19 17 15 23 23 C 1.46504 * 119.99495 * 90.00421 * 13 10 9 24 24 C 1.53006 * 109.46883 * 239.99479 * 23 13 10 25 25 C 1.52999 * 109.47050 * 120.00277 * 23 13 10 26 26 C 1.37961 * 120.14652 * 359.44906 * 9 8 7 27 27 H 1.08997 * 109.47143 * 300.00151 * 1 2 3 28 28 H 1.09002 * 109.47231 * 60.00058 * 1 2 3 29 29 H 1.09003 * 109.47585 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.07409 * 359.97438 * 6 5 3 31 31 H 1.08003 * 119.92837 * 180.02562 * 7 6 5 32 32 H 1.07997 * 119.85093 * 180.27645 * 8 7 6 33 33 H 1.08999 * 109.46508 * 25.00461 * 14 13 10 34 34 H 1.09000 * 109.46954 * 145.00097 * 14 13 10 35 35 H 0.97005 * 120.00163 * 179.97438 * 18 17 15 36 36 H 1.08993 * 109.47378 * 359.97438 * 23 13 10 37 37 H 1.09001 * 109.46801 * 300.00349 * 24 23 13 38 38 H 1.09001 * 109.46998 * 59.99945 * 24 23 13 39 39 H 1.09000 * 109.47050 * 180.02562 * 24 23 13 40 40 H 1.09000 * 109.47160 * 179.97438 * 25 23 13 41 41 H 1.09002 * 109.46719 * 299.99449 * 25 23 13 42 42 H 1.08993 * 109.47839 * 59.99291 * 25 23 13 43 43 H 1.08009 * 120.07701 * 180.25643 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2774 -0.0006 6 6 4.3024 0.1083 -0.0006 7 6 5.6793 0.1877 -0.0006 8 6 6.3043 1.4224 -0.0063 9 6 5.5540 2.5847 -0.0005 10 16 6.3602 4.1514 -0.0006 11 8 5.4325 5.0801 -0.5450 12 8 7.6550 3.9364 -0.5450 13 7 6.5844 4.5873 1.5812 14 6 5.5555 5.3606 2.2809 15 6 5.8908 6.8278 2.2043 16 1 6.7816 7.1518 1.6866 17 6 5.0605 7.7565 2.7951 18 7 3.9756 7.3620 3.4251 19 14 5.4758 9.5752 2.6995 20 1 4.8556 10.1614 1.4841 21 1 4.9522 10.2666 3.9049 22 1 6.9497 9.7436 2.6334 23 6 7.8118 4.1996 2.2809 24 6 7.4570 3.3330 3.4909 25 6 8.5489 5.4551 2.7514 26 6 4.1759 2.5197 -0.0006 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.8158 -0.8559 0.0003 31 1 6.2711 -0.7158 -0.0010 32 1 7.3828 1.4789 -0.0108 33 1 4.5872 5.1842 1.8125 34 1 5.5157 5.0511 3.3253 35 1 3.3916 8.0154 3.8412 36 1 8.4523 3.6338 1.6045 37 1 6.8163 3.8986 4.1675 38 1 6.9318 2.4386 3.1558 39 1 8.3702 3.0450 4.0117 40 1 9.4619 5.1667 3.2723 41 1 8.8016 6.0725 1.8893 42 1 7.9082 6.0206 3.4279 43 1 3.5912 3.4279 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609158349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:43 Heat of formation + Delta-G solvation = -129.009737 kcal Electronic energy + Delta-G solvation = -28529.668631 eV Core-core repulsion = 24474.480110 eV Total energy + Delta-G solvation = -4055.188521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.68230 -38.90660 -36.99077 -36.66589 -36.52258 -35.24796 -32.75607 -31.88941 -31.34898 -30.64796 -27.96527 -26.98331 -26.54499 -24.35249 -23.27753 -22.79249 -21.27151 -20.36604 -19.01116 -17.79365 -17.33630 -17.07164 -16.50259 -16.49042 -16.29972 -15.82714 -15.59812 -14.89011 -14.34562 -14.24619 -13.82381 -13.76655 -13.68963 -13.56938 -13.14906 -12.82472 -12.43888 -12.33431 -12.29900 -12.13271 -11.86252 -11.72959 -11.49993 -11.43397 -11.19213 -11.04262 -10.98244 -10.92282 -10.80822 -10.76925 -10.55152 -10.49085 -10.25803 -9.86248 -9.64497 -9.49129 -9.28276 -8.40227 -8.09662 -6.02841 -4.05481 0.38081 0.80335 1.00040 2.30915 2.46946 3.33276 3.35243 3.41724 3.44318 3.68778 4.27055 4.43968 4.47449 4.50108 4.76478 4.82948 4.91525 5.00015 5.00373 5.23610 5.27493 5.33296 5.34897 5.39871 5.61382 5.62518 5.69301 5.87452 5.94373 5.96562 6.00013 6.15642 6.17342 6.24779 6.48291 6.52912 6.53458 6.76495 7.14442 7.27542 7.40557 7.58663 7.62659 7.94392 8.23015 8.95942 9.58489 11.05867 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.004268 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.527754 B = 6558.275874 C = 7941.586160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.507 3.493 4 O -0.492 6.492 5 C -0.149 4.149 6 C -0.018 4.018 7 C -0.156 4.156 8 C 0.012 3.988 9 C -0.685 4.685 10 S 2.681 3.319 11 O -0.936 6.936 12 O -0.972 6.972 13 N -0.975 5.975 14 C 0.254 3.746 15 C -0.523 4.523 16 H 0.064 0.936 17 C 0.063 3.937 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.148 3.852 24 C -0.162 4.162 25 C -0.153 4.153 26 C 0.049 3.951 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.038 0.962 34 H 0.041 0.959 35 H 0.263 0.737 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 -18.490 -3.499 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.351 3.649 4 O -0.379 6.379 5 C -0.151 4.151 6 C -0.037 4.037 7 C -0.174 4.174 8 C -0.007 4.007 9 C -0.767 4.767 10 S 2.768 3.232 11 O -0.926 6.926 12 O -0.962 6.962 13 N -0.815 5.815 14 C 0.132 3.868 15 C -0.562 4.562 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.721 3.279 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.198 1.198 23 C 0.042 3.958 24 C -0.221 4.221 25 C -0.212 4.212 26 C 0.030 3.970 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.068 -17.689 -4.129 18.196 hybrid contribution -0.569 0.377 0.329 0.758 sum 0.498 -17.312 -3.800 17.732 Atomic orbital electron populations 1.23297 0.75768 1.03683 1.02968 1.86501 1.23745 1.32617 1.84657 1.21105 0.88920 0.81628 0.73203 1.90911 1.66493 1.35798 1.44708 1.19160 0.89303 0.95068 1.11535 1.21689 0.94089 0.97914 0.89959 1.21269 0.94428 0.98202 1.03525 1.21244 1.00530 0.91201 0.87773 1.31712 1.04642 1.23662 1.16688 1.02470 0.73618 0.73312 0.73799 1.93627 1.64231 1.58228 1.76491 1.93506 1.38720 1.86621 1.77385 1.57572 1.27237 1.65989 1.30725 1.19124 0.84386 0.90055 0.93216 1.21487 1.09067 0.90963 1.34688 0.91782 1.24910 0.94800 0.99034 0.95210 1.69922 1.13207 1.34405 1.35878 0.86566 0.78696 0.85066 0.77541 1.20484 1.21307 1.19768 1.20702 0.85078 0.96121 0.93906 1.22182 1.01586 0.99462 0.98874 1.22130 0.99116 0.97616 1.02341 1.21141 0.92705 0.98047 0.85105 0.91576 0.91700 0.87973 0.83923 0.84250 0.83683 0.94439 0.94095 0.92739 0.90030 0.91097 0.93233 0.92315 0.93416 0.92634 0.89633 0.82462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.16 9.82 -40.51 -0.40 -4.56 16 3 C 0.51 7.48 7.90 34.61 0.27 7.75 16 4 O -0.49 -8.85 16.14 -19.24 -0.31 -9.16 16 5 C -0.15 -2.12 5.87 -104.98 -0.62 -2.74 16 6 C -0.02 -0.20 9.62 -39.18 -0.38 -0.57 16 7 C -0.16 -1.57 10.03 -39.64 -0.40 -1.97 16 8 C 0.01 0.15 9.52 -39.48 -0.38 -0.23 16 9 C -0.68 -10.97 5.97 -39.64 -0.24 -11.21 16 10 S 2.68 52.27 5.64 -107.50 -0.61 51.66 16 11 O -0.94 -21.99 16.25 -57.17 -0.93 -22.92 16 12 O -0.97 -19.00 15.83 -57.17 -0.90 -19.91 16 13 N -0.97 -19.42 2.73 -108.57 -0.30 -19.72 16 14 C 0.25 6.10 4.67 -5.19 -0.02 6.08 16 15 C -0.52 -14.02 7.53 -34.44 -0.26 -14.28 16 16 H 0.06 1.71 7.07 -52.49 -0.37 1.34 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 19 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.15 2.48 3.24 -67.93 -0.22 2.26 16 24 C -0.16 -2.33 9.16 37.16 0.34 -1.99 16 25 C -0.15 -2.64 8.20 37.16 0.30 -2.33 16 26 C 0.05 0.82 9.07 -39.17 -0.36 0.47 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.14 1.14 7.61 -52.49 -0.40 0.74 16 31 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.15 1.56 7.60 -52.49 -0.40 1.16 16 33 H 0.04 0.98 7.61 -51.93 -0.40 0.58 16 34 H 0.04 0.99 6.45 -51.93 -0.33 0.66 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.08 1.22 6.91 -51.93 -0.36 0.86 16 37 H 0.07 1.15 6.69 -51.93 -0.35 0.80 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 42 H 0.08 1.67 6.65 -51.93 -0.35 1.33 16 43 H 0.16 2.92 7.20 -52.48 -0.38 2.54 16 LS Contribution 374.27 15.07 5.64 5.64 Total: -1.00 -34.06 374.27 -8.90 -42.96 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.83 Total: 0.28 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -0.97 Total: -15.75 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.44 Total: -44.80 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -2.54 Total: -56.55 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 52.27 SS G_CDS: -0.61 Total: 51.66 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.06 -8.90 -42.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609158349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.054 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds