Wall clock time and date at job start Sat Apr 11 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34707 * 117.00149 * 2 1 4 4 O 1.21469 * 119.99893 * 359.97438 * 3 2 1 5 5 C 1.47727 * 119.99768 * 180.02562 * 3 2 1 6 6 C 1.39641 * 120.15343 * 359.97438 * 5 3 2 7 7 C 1.37918 * 119.85009 * 180.02562 * 6 5 3 8 8 C 1.38393 * 120.14911 * 359.72778 * 7 6 5 9 9 C 1.38348 * 120.30265 * 0.54927 * 8 7 6 10 10 S 1.76198 * 119.92494 * 179.72791 * 9 8 7 11 11 O 1.42103 * 106.40291 * 156.18781 * 10 9 8 12 12 O 1.42096 * 106.40316 * 23.26284 * 10 9 8 13 13 N 1.65604 * 107.21445 * 269.72197 * 10 9 8 14 14 C 1.46500 * 120.00348 * 269.99913 * 13 10 9 15 15 C 1.50698 * 109.47329 * 265.00269 * 14 13 10 16 16 H 1.08002 * 119.99453 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00124 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99968 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00106 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47110 * 89.99851 * 19 17 15 21 21 H 1.48497 * 109.47309 * 209.99641 * 19 17 15 22 22 H 1.48493 * 109.47267 * 329.99940 * 19 17 15 23 23 C 1.46504 * 119.99495 * 90.00421 * 13 10 9 24 24 C 1.53006 * 109.46883 * 239.99479 * 23 13 10 25 25 C 1.52999 * 109.47050 * 120.00277 * 23 13 10 26 26 C 1.37961 * 120.14652 * 359.44906 * 9 8 7 27 27 H 1.08997 * 109.47143 * 300.00151 * 1 2 3 28 28 H 1.09002 * 109.47231 * 60.00058 * 1 2 3 29 29 H 1.09003 * 109.47585 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.07409 * 359.97438 * 6 5 3 31 31 H 1.08003 * 119.92837 * 180.02562 * 7 6 5 32 32 H 1.07997 * 119.85093 * 180.27645 * 8 7 6 33 33 H 1.08999 * 109.46508 * 25.00461 * 14 13 10 34 34 H 1.09000 * 109.46954 * 145.00097 * 14 13 10 35 35 H 0.97005 * 120.00163 * 179.97438 * 18 17 15 36 36 H 1.08993 * 109.47378 * 359.97438 * 23 13 10 37 37 H 1.09001 * 109.46801 * 300.00349 * 24 23 13 38 38 H 1.09001 * 109.46998 * 59.99945 * 24 23 13 39 39 H 1.09000 * 109.47050 * 180.02562 * 24 23 13 40 40 H 1.09000 * 109.47160 * 179.97438 * 25 23 13 41 41 H 1.09002 * 109.46719 * 299.99449 * 25 23 13 42 42 H 1.08993 * 109.47839 * 59.99291 * 25 23 13 43 43 H 1.08009 * 120.07701 * 180.25643 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2774 -0.0006 6 6 4.3024 0.1083 -0.0006 7 6 5.6793 0.1877 -0.0006 8 6 6.3043 1.4224 -0.0063 9 6 5.5540 2.5847 -0.0005 10 16 6.3602 4.1514 -0.0006 11 8 5.4325 5.0801 -0.5450 12 8 7.6550 3.9364 -0.5450 13 7 6.5844 4.5873 1.5812 14 6 5.5555 5.3606 2.2809 15 6 5.8908 6.8278 2.2043 16 1 6.7816 7.1518 1.6866 17 6 5.0605 7.7565 2.7951 18 7 3.9756 7.3620 3.4251 19 14 5.4758 9.5752 2.6995 20 1 4.8556 10.1614 1.4841 21 1 4.9522 10.2666 3.9049 22 1 6.9497 9.7436 2.6334 23 6 7.8118 4.1996 2.2809 24 6 7.4570 3.3330 3.4909 25 6 8.5489 5.4551 2.7514 26 6 4.1759 2.5197 -0.0006 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.8158 -0.8559 0.0003 31 1 6.2711 -0.7158 -0.0010 32 1 7.3828 1.4789 -0.0108 33 1 4.5872 5.1842 1.8125 34 1 5.5157 5.0511 3.3253 35 1 3.3916 8.0154 3.8412 36 1 8.4523 3.6338 1.6045 37 1 6.8163 3.8986 4.1675 38 1 6.9318 2.4386 3.1558 39 1 8.3702 3.0450 4.0117 40 1 9.4619 5.1667 3.2723 41 1 8.8016 6.0725 1.8893 42 1 7.9082 6.0206 3.4279 43 1 3.5912 3.4279 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609158349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:42 Heat of formation + Delta-G solvation = -152.222355 kcal Electronic energy + Delta-G solvation = -28530.675206 eV Core-core repulsion = 24474.480110 eV Total energy + Delta-G solvation = -4056.195095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.76764 -39.94161 -38.52139 -38.28230 -37.62726 -36.89961 -34.78834 -32.96045 -32.40365 -32.23123 -28.90285 -28.75953 -27.86089 -25.37615 -24.78992 -24.34551 -22.34774 -21.77055 -20.24182 -19.31327 -18.65017 -18.49171 -18.37447 -17.52432 -17.36506 -17.09598 -17.05823 -16.50061 -15.94257 -15.35112 -15.15611 -15.00608 -14.77488 -14.72509 -14.66955 -14.07734 -13.95117 -13.72805 -13.50219 -13.40743 -13.25491 -13.12512 -13.01576 -12.93946 -12.79862 -12.71947 -12.62997 -12.39369 -12.14758 -12.09523 -11.94399 -11.91607 -11.74460 -11.52877 -11.35417 -10.65842 -10.54440 -10.30842 -9.78128 -8.16356 -6.25077 -0.70484 -0.55718 -0.22193 1.23718 1.38601 1.42169 1.49054 1.50456 2.02045 2.42235 2.44763 2.79292 3.15263 3.25401 3.50088 3.65753 3.85031 3.92647 3.97510 4.18082 4.27291 4.29185 4.35099 4.37311 4.41330 4.57460 4.63083 4.68066 4.83637 4.94487 4.96854 4.99408 5.04003 5.13328 5.15442 5.15876 5.24894 5.38634 5.58653 5.60563 5.69772 5.81653 6.00826 6.15387 6.50690 6.82139 7.41714 8.91796 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.004268 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.527754 B = 6558.275874 C = 7941.586160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.345 6.345 3 C 0.509 3.491 4 O -0.540 6.540 5 C -0.162 4.162 6 C 0.003 3.997 7 C -0.131 4.131 8 C 0.012 3.988 9 C -0.689 4.689 10 S 2.685 3.315 11 O -0.993 6.993 12 O -0.975 6.975 13 N -0.981 5.981 14 C 0.273 3.727 15 C -0.530 4.530 16 H 0.059 0.941 17 C 0.010 3.990 18 N -0.928 5.928 19 Si 0.950 3.050 20 H -0.284 1.284 21 H -0.277 1.277 22 H -0.261 1.261 23 C 0.137 3.863 24 C -0.155 4.155 25 C -0.153 4.153 26 C 0.021 3.979 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.146 0.854 30 H 0.184 0.816 31 H 0.195 0.805 32 H 0.170 0.830 33 H 0.006 0.994 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.107 0.893 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.037 0.963 42 H 0.054 0.946 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.220 -22.485 -3.373 22.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.261 6.261 3 C 0.355 3.645 4 O -0.431 6.431 5 C -0.164 4.164 6 C -0.015 4.015 7 C -0.150 4.150 8 C -0.008 4.008 9 C -0.778 4.778 10 S 2.779 3.221 11 O -0.983 6.983 12 O -0.966 6.966 13 N -0.820 5.820 14 C 0.149 3.851 15 C -0.569 4.569 16 H 0.077 0.923 17 C -0.188 4.188 18 N -0.569 5.569 19 Si 0.775 3.225 20 H -0.210 1.210 21 H -0.203 1.203 22 H -0.185 1.185 23 C 0.032 3.968 24 C -0.214 4.214 25 C -0.212 4.212 26 C 0.001 3.999 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.163 0.837 30 H 0.201 0.799 31 H 0.212 0.788 32 H 0.188 0.812 33 H 0.024 0.976 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.080 -21.659 -3.998 22.239 hybrid contribution -1.194 1.400 0.238 1.855 sum 1.887 -20.259 -3.760 20.692 Atomic orbital electron populations 1.23659 0.73998 1.06331 1.02542 1.86486 1.25378 1.30468 1.83794 1.21330 0.89288 0.81853 0.72041 1.90893 1.67526 1.37554 1.47109 1.19230 0.89387 0.95360 1.12427 1.22191 0.94497 0.97874 0.86917 1.21854 0.94251 0.98813 1.00033 1.21675 1.01623 0.90825 0.86633 1.30920 1.04173 1.22610 1.20063 1.01802 0.73080 0.74016 0.73242 1.93554 1.65559 1.61555 1.77666 1.93483 1.38755 1.87034 1.77304 1.57431 1.27634 1.66461 1.30519 1.18587 0.84254 0.89437 0.92789 1.21814 1.08625 0.92649 1.33814 0.92274 1.25696 0.94807 1.03178 0.95162 1.70029 1.14195 1.35660 1.37016 0.85674 0.79050 0.80283 0.77454 1.21000 1.20254 1.18496 1.21092 0.83957 0.96511 0.95288 1.22127 1.02867 0.99001 0.97372 1.22111 1.00288 0.97483 1.01286 1.20888 0.93086 0.98106 0.87852 0.92292 0.92033 0.83651 0.79901 0.78785 0.81247 0.97616 0.94627 0.92693 0.87472 0.93724 0.91799 0.88865 0.89568 0.94389 0.92655 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.35 -7.37 9.82 -56.17 -0.55 -7.92 16 3 C 0.51 15.12 7.90 70.33 0.56 15.67 16 4 O -0.54 -20.77 16.14 19.94 0.32 -20.45 16 5 C -0.16 -4.51 5.87 -20.10 -0.12 -4.63 16 6 C 0.00 0.05 9.62 22.53 0.22 0.27 16 7 C -0.13 -1.90 10.03 22.23 0.22 -1.68 16 8 C 0.01 0.25 9.52 22.33 0.21 0.46 16 9 C -0.69 -22.13 5.97 22.23 0.13 -22.00 16 10 S 2.68 108.79 5.64 -56.49 -0.32 108.47 16 11 O -0.99 -50.63 16.25 -128.00 -2.08 -52.71 16 12 O -0.98 -37.89 15.83 -128.00 -2.03 -39.92 16 13 N -0.98 -40.44 2.73 -497.41 -1.36 -41.80 16 14 C 0.27 13.97 4.67 85.63 0.40 14.37 16 15 C -0.53 -29.88 7.53 25.60 0.19 -29.69 16 16 H 0.06 3.31 7.07 -2.91 -0.02 3.29 16 17 C 0.01 0.59 5.46 84.65 0.46 1.06 16 18 N -0.93 -56.06 13.29 21.44 0.28 -55.78 16 19 Si 0.95 45.62 29.54 68.60 2.03 47.65 16 20 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 23 C 0.14 4.44 3.24 44.99 0.15 4.58 16 24 C -0.15 -4.17 9.16 71.98 0.66 -3.51 16 25 C -0.15 -5.21 8.20 71.98 0.59 -4.62 16 26 C 0.02 0.72 9.07 22.54 0.20 0.92 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.18 1.74 7.61 -2.91 -0.02 1.72 16 31 H 0.20 0.85 8.06 -2.91 -0.02 0.83 16 32 H 0.17 2.85 7.60 -2.91 -0.02 2.83 16 33 H 0.01 0.33 7.61 -2.39 -0.02 0.32 16 34 H 0.04 1.85 6.45 -2.39 -0.02 1.83 16 35 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 36 H 0.11 2.94 6.91 -2.39 -0.02 2.93 16 37 H 0.04 1.43 6.69 -2.39 -0.02 1.42 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.04 1.38 7.93 -2.39 -0.02 1.37 16 42 H 0.05 2.21 6.65 -2.39 -0.02 2.19 16 43 H 0.12 4.98 7.20 -2.91 -0.02 4.96 16 Total: -1.00 -81.73 374.27 2.40 -79.33 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.02 Total: 10.26 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 5.07 Total: -27.14 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -1.07 Total: -97.58 kcal Atomic # 8 Polarization: -116.66 SS G_CDS: -4.34 Total: -121.00 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: 108.79 SS G_CDS: -0.32 Total: 108.47 kcal Total: -81.73 2.40 -79.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609158349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.891 kcal (2) G-P(sol) polarization free energy of solvation -81.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds