Wall clock time and date at job start Sat Apr 11 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46888 * 2 1 4 4 C 1.52993 * 109.47433 * 120.00317 * 2 1 3 5 5 C 1.52995 * 109.47292 * 174.99790 * 4 2 1 6 6 H 1.09004 * 109.47272 * 54.99911 * 5 4 2 7 7 N 1.46496 * 109.47502 * 295.00291 * 5 4 2 8 8 S 1.65600 * 120.00572 * 144.99604 * 7 5 4 9 9 O 1.42097 * 106.40227 * 311.46495 * 8 7 5 10 10 O 1.42098 * 106.40314 * 178.53832 * 8 7 5 11 11 C 1.76200 * 107.21533 * 65.00321 * 8 7 5 12 12 C 1.38657 * 119.87534 * 269.97735 * 11 8 7 13 13 C 1.38611 * 120.50450 * 180.02562 * 12 11 8 14 14 C 1.37644 * 120.24502 * 0.02562 * 13 12 11 15 15 C 1.40691 * 119.74527 * 359.97438 * 14 13 12 16 16 C 1.41396 * 120.24245 * 180.02562 * 15 14 13 17 17 H 1.08009 * 119.99598 * 150.21707 * 16 15 14 18 18 C 1.39943 * 120.00268 * 330.22360 * 16 15 14 19 19 N 1.30825 * 119.99976 * 161.72740 * 18 16 15 20 20 Si 1.86793 * 119.99780 * 341.72399 * 18 16 15 21 21 H 1.48503 * 109.47344 * 95.41200 * 20 18 16 22 22 H 1.48503 * 109.46947 * 215.41231 * 20 18 16 23 23 H 1.48503 * 109.47306 * 335.41258 * 20 18 16 24 24 C 1.37596 * 119.87915 * 90.00065 * 11 8 7 25 25 C 1.50701 * 109.47308 * 174.99991 * 5 4 2 26 26 O 1.20830 * 119.99924 * 119.99970 * 25 5 4 27 27 O 1.34229 * 120.00102 * 300.00296 * 25 5 4 28 28 H 1.09009 * 109.46640 * 299.99517 * 1 2 3 29 29 H 1.09002 * 109.47338 * 59.99337 * 1 2 3 30 30 H 1.08993 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46720 * 240.00983 * 2 1 3 32 32 H 1.09002 * 109.46692 * 179.97438 * 3 2 1 33 33 H 1.08989 * 109.47546 * 300.00180 * 3 2 1 34 34 H 1.09005 * 109.46637 * 60.00932 * 3 2 1 35 35 H 1.08998 * 109.47228 * 55.00027 * 4 2 1 36 36 H 1.08997 * 109.47391 * 294.99993 * 4 2 1 37 37 H 0.97008 * 119.99776 * 325.00156 * 7 5 4 38 38 H 1.08003 * 119.74856 * 0.02562 * 12 11 8 39 39 H 1.08002 * 119.87783 * 179.97438 * 13 12 11 40 40 H 1.07997 * 120.12108 * 180.02562 * 14 13 12 41 41 H 0.97000 * 119.99656 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.12593 * 0.25677 * 24 11 8 43 43 H 0.96702 * 116.99500 * 180.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5648 -0.8311 1.1878 6 1 3.9955 0.1611 1.0525 7 7 3.9480 -1.6871 0.0624 8 16 5.3253 -1.3588 -0.7964 9 8 5.2829 0.0268 -1.1085 10 8 5.4344 -2.3750 -1.7837 11 6 6.6879 -1.5807 0.2985 12 6 7.1495 -0.5123 1.0521 13 6 8.2207 -0.6721 1.9171 14 6 8.8389 -1.8961 2.0365 15 6 8.3791 -2.9873 1.2767 16 6 9.0059 -4.2495 1.3914 17 1 8.4352 -5.1524 1.2312 18 6 10.3657 -4.3289 1.7127 19 7 10.8663 -5.4492 2.1665 20 14 11.4658 -2.8353 1.4934 21 1 11.5760 -2.1079 2.7834 22 1 12.8153 -3.2746 1.0560 23 1 10.8809 -1.9361 0.4665 24 6 7.2903 -2.8135 0.4021 25 6 4.0774 -1.4303 2.4720 26 8 4.6990 -2.4663 2.4494 27 8 3.8435 -0.8133 3.6409 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6055 -1.7198 1.2950 36 1 1.7518 -0.1584 2.1369 37 1 3.3948 -2.4463 -0.1799 38 1 6.6706 0.4518 0.9645 39 1 8.5722 0.1672 2.4990 40 1 9.6731 -2.0185 2.7113 41 1 11.8087 -5.5040 2.3896 42 1 6.9321 -3.6432 -0.1891 43 1 4.1925 -1.2357 4.4377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619470097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:53 Heat of formation + Delta-G solvation = -159.705179 kcal Electronic energy + Delta-G solvation = -28897.156794 eV Core-core repulsion = 24840.637219 eV Total energy + Delta-G solvation = -4056.519575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.31609 -37.88372 -37.59451 -36.79144 -36.01764 -35.49183 -34.12987 -33.75393 -30.70699 -30.13797 -29.37313 -27.31900 -25.40267 -25.09315 -22.38229 -21.43724 -20.88883 -20.20057 -19.49134 -18.29077 -17.78553 -17.30611 -16.90683 -16.30632 -15.93446 -15.60109 -15.23143 -15.05694 -14.91490 -14.61713 -14.14507 -13.83211 -13.46566 -13.18200 -12.96761 -12.86101 -12.67705 -12.36477 -12.21950 -11.96691 -11.87379 -11.75542 -11.69462 -11.65854 -11.51337 -11.37520 -11.14735 -11.01985 -10.86667 -10.81084 -10.79580 -10.75337 -10.33034 -9.99608 -9.80071 -9.54571 -9.21936 -8.23576 -7.83811 -7.06108 -4.60420 0.78590 1.93858 2.31340 2.45549 2.85360 3.00362 3.12705 3.21735 3.39202 3.87195 4.04827 4.29351 4.39855 4.57848 4.63749 4.77009 4.90611 5.06089 5.19143 5.25064 5.32294 5.47644 5.52874 5.63199 5.66317 5.75574 5.81610 5.83860 5.98398 5.98788 6.18155 6.22505 6.23882 6.47822 6.58414 6.61166 6.88009 6.91865 7.11019 7.22228 7.40516 7.65729 7.80988 7.99327 8.21807 8.46755 8.64713 9.95973 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.003807 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.096504 B = 7352.714355 C = 7743.464953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.158 4.158 4 C -0.112 4.112 5 C 0.166 3.834 6 H 0.132 0.868 7 N -1.096 6.096 8 S 2.684 3.316 9 O -0.966 6.966 10 O -0.962 6.962 11 C -0.620 4.620 12 C -0.165 4.165 13 C -0.091 4.091 14 C -0.198 4.198 15 C 0.078 3.922 16 C -0.442 4.442 17 H 0.095 0.905 18 C 0.084 3.916 19 N -0.801 5.801 20 Si 0.907 3.093 21 H -0.269 1.269 22 H -0.286 1.286 23 H -0.243 1.243 24 C -0.082 4.082 25 C 0.448 3.552 26 O -0.473 6.473 27 O -0.520 6.520 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.421 0.579 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.287 0.713 42 H 0.117 0.883 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.335 10.464 1.014 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.215 4.215 4 C -0.151 4.151 5 C 0.056 3.944 6 H 0.149 0.851 7 N -0.853 5.853 8 S 2.780 3.220 9 O -0.956 6.956 10 O -0.952 6.952 11 C -0.712 4.712 12 C -0.186 4.186 13 C -0.110 4.110 14 C -0.218 4.218 15 C 0.073 3.927 16 C -0.470 4.470 17 H 0.113 0.887 18 C -0.136 4.136 19 N -0.425 5.425 20 Si 0.733 3.267 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.166 1.166 24 C -0.103 4.103 25 C 0.285 3.715 26 O -0.357 6.357 27 O -0.332 6.332 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.256 0.744 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.135 0.865 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -16.001 10.529 -0.127 19.155 hybrid contribution 1.178 -0.437 1.290 1.800 sum -14.823 10.092 1.163 17.970 Atomic orbital electron populations 1.21833 0.94851 1.01747 1.01932 1.21130 0.95787 0.96875 0.97900 1.21984 1.02316 0.95352 1.01866 1.21904 0.90636 1.02427 1.00172 1.20293 0.98147 0.94582 0.81368 0.85086 1.55594 1.43460 1.41946 1.44278 1.01930 0.72980 0.73464 0.73665 1.93532 1.86515 1.32897 1.82680 1.93569 1.85975 1.59290 1.56412 1.29754 1.19935 1.01914 1.19575 1.19977 1.01403 0.95900 1.01357 1.20639 0.96098 0.96363 0.97911 1.21248 1.03064 0.94510 1.02937 1.17753 0.92167 0.92920 0.89814 1.19528 0.94675 0.93297 1.39488 0.88706 1.26161 0.99199 0.97479 0.90774 1.69686 1.15877 1.27711 1.29208 0.86371 0.78123 0.81608 0.80629 1.19498 1.21359 1.16638 1.20787 0.98239 0.93806 0.97501 1.24091 0.77797 0.83657 0.85954 1.90859 1.35251 1.22707 1.86889 1.84456 1.74830 1.56226 1.17696 0.92571 0.92490 0.92685 0.90453 0.91374 0.92433 0.92519 0.90479 0.89015 0.74450 0.87451 0.88108 0.87764 0.90245 0.86461 0.73129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 2 C -0.10 -0.83 2.86 -90.62 -0.26 -1.08 16 3 C -0.16 -1.40 8.96 37.16 0.33 -1.06 16 4 C -0.11 -0.96 4.25 -26.74 -0.11 -1.07 16 5 C 0.17 1.96 2.68 -69.09 -0.18 1.77 16 6 H 0.13 1.51 5.70 -51.93 -0.30 1.21 16 7 N -1.10 -14.61 4.33 -5.88 -0.03 -14.64 16 8 S 2.68 47.55 5.71 -107.50 -0.61 46.93 16 9 O -0.97 -17.61 16.60 -57.17 -0.95 -18.56 16 10 O -0.96 -19.50 17.26 -57.17 -0.99 -20.49 16 11 C -0.62 -13.08 5.14 -39.66 -0.20 -13.28 16 12 C -0.17 -3.37 9.53 -39.29 -0.37 -3.74 16 13 C -0.09 -1.93 10.02 -39.66 -0.40 -2.32 16 14 C -0.20 -4.72 7.18 -38.87 -0.28 -5.00 16 15 C 0.08 1.98 5.10 -106.83 -0.55 1.43 16 16 C -0.44 -11.97 9.57 -37.74 -0.36 -12.34 16 17 H 0.10 2.69 8.06 -52.48 -0.42 2.26 16 18 C 0.08 2.18 5.40 -17.34 -0.09 2.08 16 19 N -0.80 -21.16 13.93 55.55 0.77 -20.39 16 20 Si 0.91 20.55 24.52 -169.99 -4.17 16.38 16 21 H -0.27 -5.83 6.71 56.52 0.38 -5.45 16 22 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.24 -5.68 6.86 56.52 0.39 -5.30 16 24 C -0.08 -1.96 9.26 -38.87 -0.36 -2.32 16 25 C 0.45 6.08 7.69 36.01 0.28 6.36 16 26 O -0.47 -8.42 16.38 -18.75 -0.31 -8.73 16 27 O -0.52 -5.52 13.23 -39.26 -0.52 -6.04 16 28 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.70 7.62 -51.93 -0.40 0.31 16 32 H 0.07 0.71 6.46 -51.93 -0.34 0.37 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.68 7.99 -51.93 -0.42 0.26 16 37 H 0.42 4.64 8.84 -34.47 -0.30 4.34 16 38 H 0.11 1.91 7.60 -52.48 -0.40 1.51 16 39 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.10 2.44 4.73 -52.49 -0.25 2.20 16 41 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 42 H 0.12 2.73 7.60 -52.49 -0.40 2.33 16 43 H 0.41 3.10 9.10 45.56 0.41 3.52 16 LS Contribution 368.40 15.07 5.55 5.55 Total: -1.00 -33.16 368.40 -8.40 -41.56 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -4.93 Total: 9.63 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: -2.22 Total: -31.22 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.75 Total: -35.02 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -2.76 Total: -53.81 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.17 Total: 16.38 kcal Atomic # 16 Polarization: 47.55 SS G_CDS: -0.61 Total: 46.93 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.16 -8.40 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.146 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds