Wall clock time and date at job start Sat Apr 11 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46888 * 2 1 4 4 C 1.52993 * 109.47433 * 120.00317 * 2 1 3 5 5 C 1.52995 * 109.47292 * 174.99790 * 4 2 1 6 6 H 1.09004 * 109.47272 * 54.99911 * 5 4 2 7 7 N 1.46496 * 109.47502 * 295.00291 * 5 4 2 8 8 S 1.65600 * 120.00572 * 144.99604 * 7 5 4 9 9 O 1.42097 * 106.40227 * 311.46495 * 8 7 5 10 10 O 1.42098 * 106.40314 * 178.53832 * 8 7 5 11 11 C 1.76200 * 107.21533 * 65.00321 * 8 7 5 12 12 C 1.38657 * 119.87534 * 269.97735 * 11 8 7 13 13 C 1.38611 * 120.50450 * 180.02562 * 12 11 8 14 14 C 1.37644 * 120.24502 * 0.02562 * 13 12 11 15 15 C 1.40691 * 119.74527 * 359.97438 * 14 13 12 16 16 C 1.41396 * 120.24245 * 180.02562 * 15 14 13 17 17 H 1.08009 * 119.99598 * 150.21707 * 16 15 14 18 18 C 1.39943 * 120.00268 * 330.22360 * 16 15 14 19 19 N 1.30825 * 119.99976 * 161.72740 * 18 16 15 20 20 Si 1.86793 * 119.99780 * 341.72399 * 18 16 15 21 21 H 1.48503 * 109.47344 * 95.41200 * 20 18 16 22 22 H 1.48503 * 109.46947 * 215.41231 * 20 18 16 23 23 H 1.48503 * 109.47306 * 335.41258 * 20 18 16 24 24 C 1.37596 * 119.87915 * 90.00065 * 11 8 7 25 25 C 1.50701 * 109.47308 * 174.99991 * 5 4 2 26 26 O 1.20830 * 119.99924 * 119.99970 * 25 5 4 27 27 O 1.34229 * 120.00102 * 300.00296 * 25 5 4 28 28 H 1.09009 * 109.46640 * 299.99517 * 1 2 3 29 29 H 1.09002 * 109.47338 * 59.99337 * 1 2 3 30 30 H 1.08993 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46720 * 240.00983 * 2 1 3 32 32 H 1.09002 * 109.46692 * 179.97438 * 3 2 1 33 33 H 1.08989 * 109.47546 * 300.00180 * 3 2 1 34 34 H 1.09005 * 109.46637 * 60.00932 * 3 2 1 35 35 H 1.08998 * 109.47228 * 55.00027 * 4 2 1 36 36 H 1.08997 * 109.47391 * 294.99993 * 4 2 1 37 37 H 0.97008 * 119.99776 * 325.00156 * 7 5 4 38 38 H 1.08003 * 119.74856 * 0.02562 * 12 11 8 39 39 H 1.08002 * 119.87783 * 179.97438 * 13 12 11 40 40 H 1.07997 * 120.12108 * 180.02562 * 14 13 12 41 41 H 0.97000 * 119.99656 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.12593 * 0.25677 * 24 11 8 43 43 H 0.96702 * 116.99500 * 180.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5648 -0.8311 1.1878 6 1 3.9955 0.1611 1.0525 7 7 3.9480 -1.6871 0.0624 8 16 5.3253 -1.3588 -0.7964 9 8 5.2829 0.0268 -1.1085 10 8 5.4344 -2.3750 -1.7837 11 6 6.6879 -1.5807 0.2985 12 6 7.1495 -0.5123 1.0521 13 6 8.2207 -0.6721 1.9171 14 6 8.8389 -1.8961 2.0365 15 6 8.3791 -2.9873 1.2767 16 6 9.0059 -4.2495 1.3914 17 1 8.4352 -5.1524 1.2312 18 6 10.3657 -4.3289 1.7127 19 7 10.8663 -5.4492 2.1665 20 14 11.4658 -2.8353 1.4934 21 1 11.5760 -2.1079 2.7834 22 1 12.8153 -3.2746 1.0560 23 1 10.8809 -1.9361 0.4665 24 6 7.2903 -2.8135 0.4021 25 6 4.0774 -1.4303 2.4720 26 8 4.6990 -2.4663 2.4494 27 8 3.8435 -0.8133 3.6409 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6055 -1.7198 1.2950 36 1 1.7518 -0.1584 2.1369 37 1 3.3948 -2.4463 -0.1799 38 1 6.6706 0.4518 0.9645 39 1 8.5722 0.1672 2.4990 40 1 9.6731 -2.0185 2.7113 41 1 11.8087 -5.5040 2.3896 42 1 6.9321 -3.6432 -0.1891 43 1 4.1925 -1.2357 4.4377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619470097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:53 Heat of formation + Delta-G solvation = -184.763255 kcal Electronic energy + Delta-G solvation = -28898.243394 eV Core-core repulsion = 24840.637219 eV Total energy + Delta-G solvation = -4057.606175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36683 -39.68011 -38.56738 -38.16465 -37.05788 -36.99132 -35.65626 -35.06107 -32.55906 -31.89672 -30.29270 -27.90838 -27.27555 -25.95111 -24.11886 -22.73717 -22.39078 -20.89221 -20.86613 -19.88517 -18.96596 -18.65160 -18.09030 -17.99461 -17.23200 -16.87510 -16.67868 -16.54957 -16.08324 -15.80286 -15.56476 -14.88722 -14.84886 -14.70553 -14.29132 -14.09239 -13.90894 -13.60947 -13.49468 -13.41315 -13.27911 -13.15368 -12.91563 -12.90574 -12.78181 -12.57616 -12.52840 -12.39079 -12.17574 -11.99923 -11.82997 -11.72933 -11.55044 -11.49051 -11.42897 -11.08232 -10.68318 -9.98781 -9.68632 -8.98687 -6.61316 -0.65644 0.18553 0.65014 1.17739 1.26216 1.33608 1.40593 1.71772 2.03078 2.21881 2.40453 2.66882 3.27883 3.31383 3.54159 3.86925 3.93140 4.12366 4.16899 4.25950 4.29207 4.41435 4.44017 4.55222 4.72872 4.82310 4.86034 4.91843 4.96907 5.02965 5.06079 5.16263 5.21530 5.32628 5.41529 5.42530 5.58098 5.59407 5.60262 5.69944 5.74642 5.88543 5.98863 6.22321 6.58097 6.67502 7.03637 8.10199 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.003807 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.096504 B = 7352.714355 C = 7743.464953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.161 4.161 4 C -0.105 4.105 5 C 0.159 3.841 6 H 0.141 0.859 7 N -1.083 6.083 8 S 2.712 3.288 9 O -0.964 6.964 10 O -0.990 6.990 11 C -0.630 4.630 12 C -0.146 4.146 13 C -0.095 4.095 14 C -0.205 4.205 15 C 0.058 3.942 16 C -0.486 4.486 17 H 0.055 0.945 18 C 0.048 3.952 19 N -0.844 5.844 20 Si 0.959 3.041 21 H -0.248 1.248 22 H -0.272 1.272 23 H -0.255 1.255 24 C -0.108 4.108 25 C 0.453 3.547 26 O -0.524 6.524 27 O -0.506 6.506 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.432 0.568 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.107 0.893 41 H 0.296 0.704 42 H 0.104 0.896 43 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.030 14.237 1.687 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.219 4.219 4 C -0.144 4.144 5 C 0.050 3.950 6 H 0.158 0.842 7 N -0.843 5.843 8 S 2.804 3.196 9 O -0.954 6.954 10 O -0.980 6.980 11 C -0.718 4.718 12 C -0.167 4.167 13 C -0.114 4.114 14 C -0.224 4.224 15 C 0.055 3.945 16 C -0.515 4.515 17 H 0.073 0.927 18 C -0.167 4.167 19 N -0.470 5.470 20 Si 0.782 3.218 21 H -0.172 1.172 22 H -0.198 1.198 23 H -0.179 1.179 24 C -0.128 4.128 25 C 0.292 3.708 26 O -0.412 6.412 27 O -0.319 6.319 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.130 0.870 37 H 0.270 0.730 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.125 0.875 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -17.685 14.307 0.591 22.755 hybrid contribution 1.409 -1.419 1.093 2.279 sum -16.276 12.888 1.684 20.829 Atomic orbital electron populations 1.21806 0.93465 1.02275 1.02545 1.21154 0.96942 0.96493 0.97323 1.22020 1.01242 0.95816 1.02774 1.21948 0.87796 1.03505 1.01131 1.20674 1.00523 0.94074 0.79753 0.84179 1.55237 1.41534 1.42837 1.44739 1.01171 0.72682 0.72946 0.72845 1.93533 1.86605 1.32676 1.82539 1.93533 1.86507 1.60291 1.57701 1.30354 1.21017 1.00851 1.19557 1.20577 1.00085 0.96929 0.99059 1.21127 0.95658 0.96520 0.98061 1.21443 1.03355 0.95057 1.02556 1.17897 0.92958 0.92974 0.90673 1.19472 0.95762 0.92930 1.43373 0.92669 1.26831 0.99676 1.00068 0.90147 1.69711 1.16763 1.29397 1.31088 0.85582 0.76822 0.78459 0.80971 1.17234 1.19832 1.17905 1.20764 0.98923 0.94987 0.98162 1.24420 0.76523 0.82802 0.87049 1.90877 1.37697 1.24954 1.87654 1.84420 1.74263 1.55585 1.17644 0.91556 0.92340 0.92241 0.91441 0.92975 0.92343 0.90968 0.89454 0.87046 0.73033 0.83767 0.83863 0.87517 0.89321 0.87748 0.71445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.19 71.98 0.66 -0.83 16 2 C -0.10 -1.38 2.86 -10.79 -0.03 -1.41 16 3 C -0.16 -2.34 8.96 71.98 0.64 -1.69 16 4 C -0.10 -1.42 4.25 30.59 0.13 -1.29 16 5 C 0.16 3.29 2.68 44.24 0.12 3.41 16 6 H 0.14 2.71 5.70 -2.39 -0.01 2.69 16 7 N -1.08 -27.01 4.33 -172.53 -0.75 -27.76 16 8 S 2.71 92.35 5.71 -56.49 -0.32 92.02 16 9 O -0.96 -32.46 16.60 -128.00 -2.13 -34.59 16 10 O -0.99 -40.07 17.26 -128.00 -2.21 -42.28 16 11 C -0.63 -25.94 5.14 22.22 0.11 -25.83 16 12 C -0.15 -5.50 9.53 22.46 0.21 -5.28 16 13 C -0.09 -3.72 10.02 22.22 0.22 -3.50 16 14 C -0.20 -9.59 7.18 22.73 0.16 -9.43 16 15 C 0.06 3.08 5.10 -21.29 -0.11 2.97 16 16 C -0.49 -28.21 9.57 23.46 0.22 -27.99 16 17 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 18 C 0.05 2.61 5.40 85.26 0.46 3.07 16 19 N -0.84 -46.78 13.93 21.83 0.30 -46.47 16 20 Si 0.96 42.55 24.52 68.60 1.68 44.23 16 21 H -0.25 -10.03 6.71 99.48 0.67 -9.36 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.26 -11.67 6.86 99.48 0.68 -10.99 16 24 C -0.11 -5.29 9.26 22.73 0.21 -5.08 16 25 C 0.45 11.25 7.69 71.24 0.55 11.80 16 26 O -0.52 -18.33 16.38 21.95 0.36 -17.97 16 27 O -0.51 -9.13 13.23 -51.41 -0.68 -9.81 16 28 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 1.06 7.62 -2.38 -0.02 1.04 16 32 H 0.05 0.92 6.46 -2.39 -0.02 0.90 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.80 8.14 -2.38 -0.02 0.79 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 1.15 7.99 -2.39 -0.02 1.13 16 37 H 0.43 8.96 8.84 -96.74 -0.85 8.11 16 38 H 0.14 4.39 7.60 -2.91 -0.02 4.36 16 39 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 40 H 0.11 4.89 4.73 -2.91 -0.01 4.87 16 41 H 0.30 14.62 8.30 -92.71 -0.77 13.85 16 42 H 0.10 5.23 7.60 -2.91 -0.02 5.21 16 43 H 0.42 5.28 9.10 -74.06 -0.67 4.61 16 Total: -1.00 -75.04 368.40 -0.70 -75.74 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -0.53 Total: 27.97 kcal Atomic # 6 Polarization: -64.65 SS G_CDS: 3.57 Total: -61.08 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -0.44 Total: -74.23 kcal Atomic # 8 Polarization: -99.99 SS G_CDS: -4.66 Total: -104.65 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.68 Total: 44.23 kcal Atomic # 16 Polarization: 92.35 SS G_CDS: -0.32 Total: 92.02 kcal Total: -75.04 -0.70 -75.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.024 kcal (2) G-P(sol) polarization free energy of solvation -75.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds