Wall clock time and date at job start Sat Apr 11 2020 06:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47082 * 2 1 4 4 C 1.53003 * 109.47224 * 239.99665 * 2 1 3 5 5 C 1.53005 * 109.46990 * 119.99528 * 2 1 3 6 6 H 1.08999 * 109.47236 * 299.99991 * 5 2 1 7 7 N 1.46496 * 109.47115 * 60.00334 * 5 2 1 8 8 S 1.65601 * 119.99915 * 214.72720 * 7 5 2 9 9 O 1.42102 * 106.40158 * 178.81348 * 8 7 5 10 10 O 1.42100 * 106.39893 * 311.72778 * 8 7 5 11 11 C 1.76194 * 107.22092 * 65.27298 * 8 7 5 12 12 C 1.38654 * 119.87485 * 269.72622 * 11 8 7 13 13 C 1.38613 * 120.50117 * 179.71971 * 12 11 8 14 14 C 1.37637 * 120.24820 * 0.55614 * 13 12 11 15 15 C 1.40698 * 119.74370 * 359.72128 * 14 13 12 16 16 C 1.41396 * 120.24389 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99911 * 204.37970 * 16 15 14 18 18 C 1.39949 * 119.99965 * 24.38938 * 16 15 14 19 19 N 1.30821 * 119.99907 * 17.85761 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 197.86574 * 18 16 15 21 21 H 1.48506 * 109.47535 * 59.99594 * 20 18 16 22 22 H 1.48504 * 109.47109 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47225 * 299.99449 * 20 18 16 24 24 C 1.37601 * 119.87707 * 89.99790 * 11 8 7 25 25 C 1.50702 * 109.47163 * 180.02562 * 5 2 1 26 26 O 1.20826 * 120.00287 * 240.00239 * 25 5 2 27 27 O 1.34230 * 119.99918 * 59.99912 * 25 5 2 28 28 H 1.08999 * 109.47123 * 300.00412 * 1 2 3 29 29 H 1.08997 * 109.46834 * 60.00654 * 1 2 3 30 30 H 1.08998 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46997 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46752 * 299.99396 * 3 2 1 33 33 H 1.08999 * 109.47477 * 59.99805 * 3 2 1 34 34 H 1.09006 * 109.46917 * 299.99626 * 4 2 1 35 35 H 1.08993 * 109.47082 * 60.00368 * 4 2 1 36 36 H 1.09007 * 109.47100 * 180.02562 * 4 2 1 37 37 H 0.97003 * 120.00202 * 34.99759 * 7 5 2 38 38 H 1.08000 * 119.74848 * 0.02562 * 12 11 8 39 39 H 1.08001 * 119.87774 * 180.25924 * 13 12 11 40 40 H 1.08000 * 120.13179 * 179.74644 * 14 13 12 41 41 H 0.97001 * 119.99674 * 180.02562 * 19 18 16 42 42 H 1.08003 * 120.12815 * 359.97438 * 24 11 8 43 43 H 0.96705 * 116.99651 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2494 6 1 1.6767 -0.2073 2.1393 7 7 1.5517 -2.1024 1.2494 8 16 1.1643 -2.8435 2.6787 9 8 0.7034 -4.1453 2.3437 10 8 2.2530 -2.6077 3.5610 11 6 -0.2183 -1.9847 3.3536 12 6 -0.0149 -0.9120 4.2083 13 6 -1.0931 -0.2235 4.7420 14 6 -2.3796 -0.6060 4.4372 15 6 -2.5980 -1.6967 3.5757 16 6 -3.9153 -2.0984 3.2550 17 1 -4.1095 -3.1143 2.9443 18 6 -4.9673 -1.1793 3.3399 19 7 -4.7141 0.1038 3.3688 20 14 -6.7328 -1.7849 3.4124 21 1 -6.9119 -2.6469 4.6084 22 1 -7.6520 -0.6217 3.4990 23 1 -7.0384 -2.5676 2.1879 24 6 -1.4958 -2.3846 3.0350 25 6 3.5470 -0.7207 1.2497 26 8 4.1516 -1.7668 1.2497 27 8 4.2177 0.4421 1.2499 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7491 -1.2491 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2490 37 1 1.4591 -2.5841 0.4126 38 1 0.9912 -0.6075 4.4560 39 1 -0.9230 0.6132 5.4034 40 1 -3.2183 -0.0708 4.8574 41 1 -5.4433 0.7408 3.4280 42 1 -1.6520 -3.2230 2.3722 43 1 5.1835 0.3917 1.2505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619470498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:01 Heat of formation + Delta-G solvation = -156.911052 kcal Electronic energy + Delta-G solvation = -29153.124376 eV Core-core repulsion = 25096.725964 eV Total energy + Delta-G solvation = -4056.398413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.67810 -37.82163 -37.63159 -36.68980 -36.17493 -35.32725 -33.90399 -33.24968 -30.13501 -29.85610 -27.88883 -27.36616 -26.67146 -25.53822 -22.06408 -21.95925 -21.05100 -19.50030 -19.22214 -18.06944 -17.98898 -17.39433 -16.59268 -15.97849 -15.88091 -15.78888 -15.18775 -14.83891 -14.56082 -14.16041 -13.75811 -13.58835 -13.53732 -13.37820 -13.09900 -12.62187 -12.25916 -12.06483 -11.95035 -11.85822 -11.78008 -11.63495 -11.56019 -11.44735 -11.41721 -11.39245 -11.05398 -10.95140 -10.92114 -10.88650 -10.71097 -10.68269 -10.65242 -9.87266 -9.75050 -9.38876 -9.34459 -8.10437 -7.76306 -6.97870 -4.58495 0.90314 2.12490 2.22988 2.59191 2.91887 2.96900 2.98842 3.05543 3.46542 3.79192 4.19217 4.34763 4.45202 4.65250 4.76136 5.00520 5.10142 5.15399 5.31289 5.35060 5.53504 5.62445 5.76253 5.79079 5.88766 5.98133 5.99894 6.08949 6.10746 6.18744 6.34666 6.47686 6.51399 6.60582 6.70939 6.77207 6.96980 7.04796 7.15950 7.32219 7.67026 7.75807 7.89082 7.90727 8.35201 8.61811 8.66492 9.97278 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.003957 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.894437 B = 7074.713410 C = 7682.779295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C -0.153 4.153 4 C -0.147 4.147 5 C 0.179 3.821 6 H 0.128 0.872 7 N -1.097 6.097 8 S 2.684 3.316 9 O -0.966 6.966 10 O -0.967 6.967 11 C -0.630 4.630 12 C -0.154 4.154 13 C -0.117 4.117 14 C -0.118 4.118 15 C 0.094 3.906 16 C -0.459 4.459 17 H 0.083 0.917 18 C 0.076 3.924 19 N -0.792 5.792 20 Si 0.911 3.089 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.121 4.121 25 C 0.467 3.533 26 O -0.498 6.498 27 O -0.510 6.510 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.419 0.581 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.284 0.716 42 H 0.112 0.888 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.007 5.313 -7.265 12.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 C -0.211 4.211 4 C -0.205 4.205 5 C 0.068 3.932 6 H 0.145 0.855 7 N -0.854 5.854 8 S 2.780 3.220 9 O -0.956 6.956 10 O -0.957 6.957 11 C -0.723 4.723 12 C -0.176 4.176 13 C -0.137 4.137 14 C -0.138 4.138 15 C 0.090 3.910 16 C -0.488 4.488 17 H 0.101 0.899 18 C -0.142 4.142 19 N -0.417 5.417 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.188 1.188 24 C -0.142 4.142 25 C 0.306 3.694 26 O -0.384 6.384 27 O -0.321 6.321 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.254 0.746 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.143 0.857 41 H 0.095 0.905 42 H 0.130 0.870 43 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 9.113 4.606 -6.756 12.244 hybrid contribution -0.776 0.103 -0.228 0.815 sum 8.337 4.709 -6.985 11.852 Atomic orbital electron populations 1.21876 0.91799 1.03357 1.02912 1.20758 0.97690 0.95884 0.92316 1.22114 1.02860 0.93632 1.02474 1.21962 1.00667 1.00679 0.97178 1.20304 0.85887 0.83899 1.03099 0.85489 1.55594 1.80765 1.22393 1.26611 1.01940 0.74369 0.73388 0.72322 1.93546 1.82564 1.36143 1.83383 1.93537 1.52753 1.85786 1.63597 1.29690 1.14052 1.13527 1.14995 1.20062 0.97802 0.97327 1.02364 1.20791 0.93435 0.99092 1.00336 1.21640 0.95508 0.99125 0.97520 1.17661 0.92505 0.91194 0.89603 1.19604 0.91157 0.98041 1.40026 0.89918 1.25920 1.02001 0.94313 0.91967 1.69763 1.35334 1.02131 1.34465 0.86308 0.80590 0.79343 0.80257 1.18668 1.20226 1.18798 1.20767 0.90582 1.01399 1.01481 1.24095 0.92214 0.81267 0.71873 1.90709 1.70031 1.33303 1.44358 1.84649 1.26229 1.35636 1.85628 0.91225 0.92069 0.91596 0.90202 0.92092 0.91835 0.92082 0.91451 0.92888 0.74551 0.87746 0.88352 0.85734 0.90485 0.87017 0.73866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.32 37.16 0.31 -1.45 16 2 C -0.06 -0.72 0.62 -154.50 -0.10 -0.81 16 3 C -0.15 -1.47 7.95 37.16 0.30 -1.18 16 4 C -0.15 -1.45 8.04 37.16 0.30 -1.15 16 5 C 0.18 2.42 1.98 -69.08 -0.14 2.28 16 6 H 0.13 1.74 7.27 -51.93 -0.38 1.37 16 7 N -1.10 -16.54 4.16 -5.88 -0.02 -16.57 16 8 S 2.68 51.39 5.65 -107.50 -0.61 50.79 16 9 O -0.97 -20.65 17.27 -57.17 -0.99 -21.64 16 10 O -0.97 -20.49 17.01 -57.17 -0.97 -21.46 16 11 C -0.63 -13.20 5.82 -39.66 -0.23 -13.43 16 12 C -0.15 -3.18 8.94 -39.29 -0.35 -3.53 16 13 C -0.12 -2.49 10.02 -39.66 -0.40 -2.88 16 14 C -0.12 -2.80 8.70 -38.87 -0.34 -3.14 16 15 C 0.09 2.32 5.58 -106.83 -0.60 1.72 16 16 C -0.46 -11.33 9.05 -37.74 -0.34 -11.67 16 17 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 18 C 0.08 1.77 5.14 -17.34 -0.09 1.68 16 19 N -0.79 -18.69 10.95 55.55 0.61 -18.09 16 20 Si 0.91 17.50 29.59 -169.99 -5.03 12.47 16 21 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 23 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 24 C -0.12 -2.77 9.26 -38.87 -0.36 -3.13 16 25 C 0.47 6.35 6.37 36.01 0.23 6.58 16 26 O -0.50 -8.35 17.19 -18.75 -0.32 -8.68 16 27 O -0.51 -5.00 10.34 -39.26 -0.41 -5.41 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.87 7.60 -51.93 -0.39 0.47 16 31 H 0.08 0.72 5.32 -51.92 -0.28 0.45 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.60 6.51 -51.93 -0.34 0.26 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.52 7.22 -51.92 -0.37 0.15 16 37 H 0.42 5.43 7.03 -34.47 -0.24 5.19 16 38 H 0.10 1.95 7.59 -52.49 -0.40 1.55 16 39 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.12 3.02 6.15 -52.49 -0.32 2.70 16 41 H 0.28 6.12 8.30 -40.82 -0.34 5.78 16 42 H 0.11 2.47 7.60 -52.48 -0.40 2.07 16 43 H 0.40 2.30 9.10 45.56 0.41 2.72 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -31.52 365.64 -8.83 -40.35 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -4.80 Total: 12.83 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: -1.80 Total: -30.11 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.58 Total: -34.65 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -2.69 Total: -57.19 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Atomic # 16 Polarization: 51.39 SS G_CDS: -0.61 Total: 50.79 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.52 -8.83 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.557 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds